BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0060.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004651560.1| beta-lactamase [Parachlamydia acanthamoebae ... 117 4e-24 ref|ZP_06300503.1| hypothetical protein pah_c205o046 [Parachlamy... 116 7e-24 ref|YP_001251338.1| AMPC cephalosporinase [Legionella pneumophil... 113 7e-23 ref|ZP_04749539.1| beta-lactamase [Mycobacterium kansasii ATCC 1... 112 8e-23 ref|ZP_06299750.1| hypothetical protein pah_c050o010 [Parachlamy... 112 9e-23 >ref|YP_004651560.1| beta-lactamase [Parachlamydia acanthamoebae UV7] emb|CCB85706.1| beta-lactamase [Parachlamydia acanthamoebae UV7] Length = 365 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 167/360 (46%), Gaps = 51/360 (14%) Query: 19 SDQMIEATTSPAQIVQQAAKKYLGISNAPGCCIAVYDEKSFGTKGYVYPKGLSGVAGSSP 78 ++ I+ + Q+V++A +Y +N PG + +Y + K Y P G + + P Sbjct: 23 TESHIKQKSFHIQLVEKAVLQYQQKNNIPGIAVVLY----YQGKPYFLPFGSANLRSKKP 78 Query: 79 APFSVTTDTVFEIGSVTKVFTSTLLAVAVKAGGPSLDDTIGPYLNLFSAKAVGTPVLDAI 138 +T +T+FE+GS+TK FT+ LLA+ V G L D + YL + P + Sbjct: 79 ----ITENTIFELGSITKSFTAILLAIEVLDGKIKLSDPVARYLP--GLREFTGP-FSKV 131 Query: 139 QLVQFATHTSG----MPEQPGDGLTGYSEQLFADEPPSGELINWWNQYDTPPQGCWQYSN 194 ATHTSG +PE+ + +AD L NW + P ++YSN Sbjct: 132 TFQHLATHTSGFMRVIPEK--------DRKTYAD--IVKYLRNWHPTHS--PGTHYEYSN 179 Query: 195 IGFVTLGFAVTQMFAKDKGHNYNEILAEYVTGPLGMKQTGAVVNSSWK--IAQGCIGHWS 252 GF LG A+ +F K NY +L+ + PL M T VV W+ AQG + Sbjct: 180 FGFGILGLALENVFQK----NYFNLLSINLLNPLQMNHTFLVVPQQWQADYAQG----YD 231 Query: 253 KSAEPPYQIVFDRNTPTGGTAFDLKTTGDDMIRFLAAQIAAPN--GALGSQIALTQQNHG 310 K+ P + G L+++ DM +FLAA + P + I LT+ G Sbjct: 232 KNGNPAEKWPITLMQAAGA----LRSSAADMRKFLAACLNLPGTPSKIAEAIYLTET--G 285 Query: 311 TFPVCGENTSVTMGLAWQITTDTQGHTVFTKNGATSRGGFEAIVIVVPELQCGVAVLSNQ 370 F + T V ++W + TD ++++TKNG + GF + +PELQ G+ +++N+ Sbjct: 286 NFKMGANKTQV---MSW-MKTDFGSYSLYTKNGGVT--GFATFMGFIPELQIGLVIMANK 339 >ref|ZP_06300503.1| hypothetical protein pah_c205o046 [Parachlamydia acanthamoebae str. Hall's coccus] gb|EFB40410.1| hypothetical protein pah_c205o046 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 365 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 166/360 (46%), Gaps = 51/360 (14%) Query: 19 SDQMIEATTSPAQIVQQAAKKYLGISNAPGCCIAVYDEKSFGTKGYVYPKGLSGVAGSSP 78 ++ I+ + Q+V++A +Y +N PG + +Y + K Y P G + + P Sbjct: 23 TESHIKQKSFHIQLVEKAVLQYQQKNNIPGIAVVLY----YQGKPYFLPFGSANLRSKKP 78 Query: 79 APFSVTTDTVFEIGSVTKVFTSTLLAVAVKAGGPSLDDTIGPYLNLFSAKAVGTPVLDAI 138 +T +T+FE+GS+TK FT+ LLA+ V G L D + YL + P + Sbjct: 79 ----ITENTIFELGSITKSFTAILLAIEVLDGKIKLSDPVARYLP--GLREFTGP-FSKV 131 Query: 139 QLVQFATHTSG----MPEQPGDGLTGYSEQLFADEPPSGELINWWNQYDTPPQGCWQYSN 194 ATHTSG +PE+ + +AD L NW P ++YSN Sbjct: 132 TFQHLATHTSGFMRVIPEK--------DRKTYAD--IVKYLRNW--HPTNSPGTHYEYSN 179 Query: 195 IGFVTLGFAVTQMFAKDKGHNYNEILAEYVTGPLGMKQTGAVVNSSWK--IAQGCIGHWS 252 GF LG A+ +F K NY +L+ + PL M T VV W+ AQG + Sbjct: 180 FGFGILGLALENVFQK----NYFNLLSINLLNPLQMNHTFLVVPQQWQADYAQG----YD 231 Query: 253 KSAEPPYQIVFDRNTPTGGTAFDLKTTGDDMIRFLAAQIAAPN--GALGSQIALTQQNHG 310 K+ P + G L+++ DM +FLAA + P + I LT+ G Sbjct: 232 KNGNPAEKWPITLMQAAGA----LRSSAADMRKFLAACLNLPGTPSKIAEAIYLTET--G 285 Query: 311 TFPVCGENTSVTMGLAWQITTDTQGHTVFTKNGATSRGGFEAIVIVVPELQCGVAVLSNQ 370 F + T V ++W + TD ++++TKNG + GF + +PELQ G+ +++N+ Sbjct: 286 NFKMGANKTQV---MSW-MKTDFGSYSLYTKNGGVT--GFATFMGFIPELQIGLVIMANK 339 >ref|YP_001251338.1| AMPC cephalosporinase [Legionella pneumophila str. Corby] ref|YP_003619748.1| beta-lactamase [Legionella pneumophila 2300/99 Alcoy] gb|ABQ55992.1| AMPC cephalosporinase [Legionella pneumophila str. Corby] gb|ADG25796.1| beta-lactamase [Legionella pneumophila 2300/99 Alcoy] Length = 359 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 104/347 (29%), Positives = 155/347 (44%), Gaps = 46/347 (13%) Query: 32 IVQQAAKKYLGISNAPGCCIAVYDEKSFGTKGYVYPKGLSGVAGSSPAPFSVTTDTVFEI 91 ++ Q + ++ PG IA+Y + K Y Y G + P VT +T+FE+ Sbjct: 32 LINQLVQPFIYAHQTPGLAIAIY----YNGKDYYYNFGFADRKSKKP----VTKNTIFEL 83 Query: 92 GSVTKVFTSTLLAVAVKAGGPSLDDTIGPYLNLFSAKAVGTPVLDAIQLVQFATHTSGMP 151 S+TK+F STL+A+ V+ G ++ D Y S K G P+ D +Q+V ATHT+ P Sbjct: 84 ASITKIFISTLVALEVQKGKLNVTDYAVQYTPELS-KTNGLPI-DRVQIVHLATHTASFP 141 Query: 152 EQPGDGLTGYSEQLFADEPPSGELINWWNQYDT--PPQGC---WQYSNIGFVTLGFAVTQ 206 +Q EQ ++ G + ++ + T PP ++YSNIGF LG+ + Sbjct: 142 KQ--------MEQFGVNK---GNIQAFFARLKTWRPPVKIGTHYKYSNIGFGYLGYVLEN 190 Query: 207 MFAKDKGHNYNEILAEYVTGPLGMKQTGAVVNSSWKIAQGCIGHWSKSAEPPYQIVFDRN 266 +L +T PLGM T V S + G+ K+ PY Sbjct: 191 ----ASNETLPNLLKSNITKPLGMSHTFFNVPESLANYEAQ-GYRPKNKPAPYY------ 239 Query: 267 TPT---GGTAFDLKTTGDDMIRFLAAQIAAPNGALGSQIALTQQNHGTFPVCGENTSVTM 323 TP GG A L+++ DM+ FL A + G ++ L+ + P N + M Sbjct: 240 TPANFLGGGA--LRSSAADMLVFLKANLGIQPGTASPEL-LSAMQYAQQPFFEVNPNFVM 296 Query: 324 GLAWQITTDTQGHTVFTKNGATSRGGFEAIVIVVPELQCGVAVLSNQ 370 GL WQ + H V TKNGA GF + P + GV VL NQ Sbjct: 297 GLGWQ-RVKRERHIVITKNGANQ--GFSTFIGFSPAKKLGVIVLINQ 340 >ref|ZP_04749539.1| beta-lactamase [Mycobacterium kansasii ATCC 12478] Length = 436 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 142/314 (45%), Gaps = 51/314 (16%) Query: 84 TTDTVFEIGSVTKVFTSTLLA--VAVKAGGPSLDDTIGPYLNLFSAKAVGTPVLDAIQLV 141 T T+F IGSVTK FT+ L A VA++ D + YL+ + + A+QLV Sbjct: 127 TERTIFSIGSVTKTFTAALFAAGVAMRPDCFDWDAGLKRYLSTYLGDT--GDLSKAMQLV 184 Query: 142 ---QFATHTSGMPEQ---PGDGLTGYSEQLFADEP--PSGELINWWNQYDTP-PQGCWQY 192 A HTSG+ P DG + LF P P L+N W + P P CWQY Sbjct: 185 TPRMLAQHTSGLAHDSTGPADG-----DGLFLTNPSAPPPSLLNAWRTHRGPQPGSCWQY 239 Query: 193 SNIGFVTLGFAVTQMF-AKDKGHNYNEILAEYVTGPLGMKQTGAVVNSSWKIAQGCIGHW 251 SN+GFVTLGFA + G +Y +L + +TGPL M TG V ++A+ Sbjct: 240 SNLGFVTLGFAAVSAYRCAGMGGSYAGVLRDQITGPLAMPDTGTTVADGAQLARAYPNGR 299 Query: 252 SKSAEPPYQIVFDRNTPTGGTAFDLKTTGDDMIRFLAAQIAAPNG------ALGSQIALT 305 S P DLK++ DM +L A + A G AL + I L Sbjct: 300 EVSPAAPS---------------DLKSSAADMHTWLLAHLGAVRGPEHLMQALATTIRLE 344 Query: 306 QQNHGTFPVCGENTS--VTMGLAWQITTDTQGHTVFTKNGATSRGGFEAIVIVVP----E 359 + +CG++T MGLAWQ+ T + K+G TS GG + + P Sbjct: 345 PL---SVEMCGKHTRGPTQMGLAWQVETGPA--QIIWKDGLTSAGGCSCWIGITPAGPAN 399 Query: 360 LQCGVAVLSNQYFD 373 G+A+L N +++ Sbjct: 400 ESMGIAILVNGFWN 413 >ref|ZP_06299750.1| hypothetical protein pah_c050o010 [Parachlamydia acanthamoebae str. Hall's coccus] ref|YP_004651923.1| beta-lactamase [Parachlamydia acanthamoebae UV7] gb|EFB41062.1| hypothetical protein pah_c050o010 [Parachlamydia acanthamoebae str. Hall's coccus] emb|CCB86069.1| beta-lactamase [Parachlamydia acanthamoebae UV7] Length = 359 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 166/346 (47%), Gaps = 39/346 (11%) Query: 29 PAQIVQQAAKKYLGISNAPGCCIAVYDEKSFGTKGYVYPKGLSGVAGSSPAPFSVTTDTV 88 PA I++Q +KY+ PG IA+Y + K Y + G + + SVT+DT+ Sbjct: 26 PALIIEQTIQKYMQEKQIPGMAIALY----YNQKPYFFNFGFADDLSNQ----SVTSDTL 77 Query: 89 FEIGSVTKVFTSTLLAVAVKAGGPSLDDTIGPYLNLFSAKAVGTPVLDAIQLVQFATHTS 148 FEI S+TKVFTST LA+ + L D + YL + G + + L+Q ATHTS Sbjct: 78 FEIASLTKVFTSTALAIQILKSKMRLSDPVIKYLPNVQKRLQG---IGKVTLLQLATHTS 134 Query: 149 GMPEQPGDGLTGYSEQLFADEPPSGELINWWNQYDTPPQGCWQYSNIGFVTLGFAVTQMF 208 G+P P ++ + ++ W Q D PP + YSN+G+ LG+A+ Sbjct: 135 GLPRIPPRLPPHRGKKYHKNSVL--HFLSEW-QPDRPPGEHYSYSNLGYGVLGYAI---- 187 Query: 209 AKDKGHNYNEILAEYVTGPLGMKQTGAVVNSSWK--IAQGCIGHWSKSAEPPYQIVFDRN 266 A + +Y + + E++ PL MK T +V +++ AQG + + N Sbjct: 188 ADVENKHYGDSIKEHILEPLFMKSTFLIVPHAYQELYAQGYTKEGNLAERSSV------N 241 Query: 267 TPTGGTAFDLKTTGDDMIRFLAAQ--IAAPNGALGSQIALTQQNHGTFPVCGENTSVTMG 324 G A L++T D+++FL A I P L + LTQ++ F + N +++G Sbjct: 242 AWPAGCA--LRSTSRDLLKFLMASLGIEGPQ-ELMQAMELTQKSF--FKI---NDQLSIG 293 Query: 325 LAWQITTDTQGHTVFTKNGATSRGGFEAIVIVVPELQCGVAVLSNQ 370 L WQ T T KNG GF + + ++P + G+ +L+N+ Sbjct: 294 LGWQKYT-TDKLLFVDKNGQVP--GFSSYIGLLPNQKIGIVLLANK 336