BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0055.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q89N37.1|DEFL_BRAJA RecName: Full=Peptide deformylase-like; A... 277 4e-73 ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum U... 276 5e-73 ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2] >gi|30... 258 2e-67 gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. ... 237 4e-61 ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 23... 237 5e-61 >sp|Q89N37.1|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 170 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 131/164 (79%), Positives = 148/164 (90%) Query: 1 MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60 MTIRP+VRYPD RLA+PA PVT FDD LREL DLL+TM AAPGIGITAPHIGV LRVVV Sbjct: 6 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65 Query: 61 LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120 LELDA++G RTYVNPEI SPEMI+H+EGSVSMPGVNDEV+RHARVRI Y DLDG MQT Sbjct: 66 LELDAKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGTMQT 125 Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164 E+S+ LRAVCHQHEIDQLDGMFWI+RLSR+KRERL+K+++K+SR Sbjct: 126 EDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSR 169 >ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 131/164 (79%), Positives = 148/164 (90%) Query: 1 MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60 MTIRP+VRYPD RLA+PA PVT FDD LREL DLL+TM AAPGIGITAPHIGV LRVVV Sbjct: 1 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60 Query: 61 LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120 LELDA++G RTYVNPEI SPEMI+H+EGSVSMPGVNDEV+RHARVRI Y DLDG MQT Sbjct: 61 LELDAKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGTMQT 120 Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164 E+S+ LRAVCHQHEIDQLDGMFWI+RLSR+KRERL+K+++K+SR Sbjct: 121 EDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSR 164 >ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2] gb|EFM60603.1| peptide deformylase [Brucella sp. BO2] Length = 164 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 123/164 (75%), Positives = 141/164 (85%) Query: 1 MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60 MT+R IV+YPDPRL AEPVT FD+ LR+L DLL+TM AAPGIGITAPHIG+S RVVV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120 LELD GP+TY+NPEI+ E I H+EGSVSMPGV DEVERHAR+R+RYQDLDGN QT Sbjct: 61 LELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQT 120 Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164 EESDGL AVCHQHEIDQLDG+FW++RLSR+KRERLIKRY+K+ R Sbjct: 121 EESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164 >gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] Length = 203 Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 121/164 (73%), Positives = 140/164 (85%) Query: 1 MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60 MT+R IV+YPDPRL AEPVT FD+ LR+L DLL+TM AAPGIGITAPHIG+S RVVV Sbjct: 40 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99 Query: 61 LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120 LELD GP+ Y+NPEI+ E I H+EGSVSMPGV DEVERHAR+R+RYQDLDGN QT Sbjct: 100 LELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQT 159 Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164 EESDGL AVCHQHEIDQLDG+FW++RLSR++RERLIKRY+K+ R Sbjct: 160 EESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203 >ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A] ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A] gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28] gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90] Length = 214 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 121/164 (73%), Positives = 140/164 (85%) Query: 1 MTIRPIVRYPDPRLALPAEPVTMFDDALRELTQDLLETMHAAPGIGITAPHIGVSLRVVV 60 MT+R IV+YPDPRL AEPVT FD+ LR+L DLL+TM AAPGIGITAPHIG+S RVVV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 LELDAREGPRTYVNPEIIQTSPEMILHKEGSVSMPGVNDEVERHARVRIRYQDLDGNMQT 120 LELD GP+ Y+NPEI+ E I H+EGSVSMPGV DEVERHAR+R+RYQDLDGN QT Sbjct: 111 LELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQT 170 Query: 121 EESDGLRAVCHQHEIDQLDGMFWIRRLSRIKRERLIKRYDKISR 164 EESDGL AVCHQHEIDQLDG+FW++RLSR++RERLIKRY+K+ R Sbjct: 171 EESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214