BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0054.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770650.1| transcriptional regulator PadR [Bradyrhizobium ... 497 e-139 ref|YP_001238764.1| transcriptional regulator [Bradyrhizobium sp... 456 e-126 ref|YP_001204430.1| transcriptional regulator [Bradyrhizobium sp... 450 e-124 ref|YP_002976339.1| MarR family transcriptional regulator [Rhizo... 431 e-119 ref|YP_768568.1| hypothetical protein RL2984 [Rhizobium legumino... 431 e-119 >ref|NP_770650.1| transcriptional regulator PadR [Bradyrhizobium japonicum USDA 110] dbj|BAC49275.1| transcriptional regulatory protein PadR- [Bradyrhizobium japonicum USDA 110] Length = 290 Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust. Identities = 247/290 (85%), Positives = 265/290 (91%) Query: 1 MLDPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRADVGEIRDYLGLDS 60 MLDPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGR+DV EIRDYLGLDS Sbjct: 1 MLDPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRSDVAEIRDYLGLDS 60 Query: 61 GLMSRLLRSLEDEELIETTAHGEDARRRIARLTAAGKREFNAYEAISNRQAKDFLAHHTQ 120 GLMSRLLRSLEDE L+ETTAH DARRR+A+LT G+REF AYEA+SN QA+ FLAHH Q Sbjct: 61 GLMSRLLRSLEDEGLVETTAHAGDARRRVAKLTRTGRREFAAYEALSNTQAESFLAHHLQ 120 Query: 121 REALLAAMDLIASALGRDGTALDEMDPRSDEARYCLGEYYAELARRFEKGFDVKLSRDPE 180 R+ALLAAMD+IASAL R+ ALDE DPRS+EARYCLGEYYAEL+RRF++GFDV LSRDP+ Sbjct: 121 RDALLAAMDMIASALTRERVALDETDPRSEEARYCLGEYYAELSRRFKQGFDVSLSRDPD 180 Query: 181 AKDMVRPRGSFIVAMSDGLPIGCVGLKGSSSGFAEIKRLWVAPGARGLGLGRRLMDAAER 240 AKDM RPRGSFIVAMSD LPIGCVGLKG+ G+AEIKRLWVAP ARGL LGRRLMDAAE Sbjct: 181 AKDMRRPRGSFIVAMSDTLPIGCVGLKGTDHGYAEIKRLWVAPAARGLRLGRRLMDAAED 240 Query: 241 AARELGIAVLRLDTNSALPEAGQLYRRTGWTEIPRFNDDPYPDLFFEKHL 290 AARELGIA+LRLDTNSALPEAGQLYR TGW EIPRFNDDPYPDLFFEK L Sbjct: 241 AARELGIALLRLDTNSALPEAGQLYRSTGWREIPRFNDDPYPDLFFEKQL 290 >ref|YP_001238764.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34858.1| putative transcriptional regulatory protein, MarR family with a Acetyltransferase (GNAT) domain [Bradyrhizobium sp. BTAi1] Length = 290 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/290 (77%), Positives = 251/290 (86%) Query: 1 MLDPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRADVGEIRDYLGLDS 60 MLDP+SRVRRFNRAVTS VGALDTSFLGRGRPLGAARVLNAIGHGR+DV E+RDYL LDS Sbjct: 1 MLDPISRVRRFNRAVTSEVGALDTSFLGRGRPLGAARVLNAIGHGRSDVAELRDYLALDS 60 Query: 61 GLMSRLLRSLEDEELIETTAHGEDARRRIARLTAAGKREFNAYEAISNRQAKDFLAHHTQ 120 GLMSRLLRSLE+E L+ T H EDARRRIA+LTAAG+REF AYE +SN QA+ LA H+Q Sbjct: 61 GLMSRLLRSLEEEGLVTTKPHPEDARRRIAKLTAAGRREFEAYETLSNAQAESMLARHSQ 120 Query: 121 REALLAAMDLIASALGRDGTALDEMDPRSDEARYCLGEYYAELARRFEKGFDVKLSRDPE 180 EALLAAMD++A+ALGR ++D +DPRS+ ARYCLGEYYAEL+RRF +G+DV LSRDP+ Sbjct: 121 PEALLAAMDMVAAALGRSRISIDLLDPRSEPARYCLGEYYAELSRRFARGYDVALSRDPD 180 Query: 181 AKDMVRPRGSFIVAMSDGLPIGCVGLKGSSSGFAEIKRLWVAPGARGLGLGRRLMDAAER 240 A DM+ PRG+F VA+SDGLP+GCVGLKG+ AEIKRLWVAP ARGLGL RRLMDAAE Sbjct: 181 ATDMIAPRGAFFVALSDGLPLGCVGLKGAGGPLAEIKRLWVAPAARGLGLARRLMDAAET 240 Query: 241 AARELGIAVLRLDTNSALPEAGQLYRRTGWTEIPRFNDDPYPDLFFEKHL 290 AAR+L I LRLDTNSAL EA QLYRRTGWTEI RFNDDPYPDLFFEK L Sbjct: 241 AARQLSITTLRLDTNSALGEAMQLYRRTGWTEIERFNDDPYPDLFFEKRL 290 >ref|YP_001204430.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76193.1| putative transcriptional regulatory protein, MarR family with a Acetyltransferase (GNAT) domain [Bradyrhizobium sp. ORS 278] Length = 291 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/290 (77%), Positives = 246/290 (84%) Query: 1 MLDPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRADVGEIRDYLGLDS 60 MLDPV+RVRRFNRAVTS VGALDTSFLGRGRPLGAARVLNAIGHGR+DV E+RDYL LDS Sbjct: 1 MLDPVARVRRFNRAVTSEVGALDTSFLGRGRPLGAARVLNAIGHGRSDVAELRDYLALDS 60 Query: 61 GLMSRLLRSLEDEELIETTAHGEDARRRIARLTAAGKREFNAYEAISNRQAKDFLAHHTQ 120 GLMSR LR LEDE LI T H +DARRR A+LTAAG+REF AYE +SN QA LA +Q Sbjct: 61 GLMSRFLRGLEDEGLITTKPHPDDARRRSAKLTAAGRREFEAYETLSNAQASAMLARSSQ 120 Query: 121 REALLAAMDLIASALGRDGTALDEMDPRSDEARYCLGEYYAELARRFEKGFDVKLSRDPE 180 REALLAAMD++A+ALGRD +DE+DPR D ARYCLGEYYAEL+RRF +GFDV LSRDP+ Sbjct: 121 REALLAAMDMVAAALGRDRIRIDEVDPRGDPARYCLGEYYAELSRRFARGFDVALSRDPD 180 Query: 181 AKDMVRPRGSFIVAMSDGLPIGCVGLKGSSSGFAEIKRLWVAPGARGLGLGRRLMDAAER 240 A DM+ PRG+F VA+SDGLP+GCVGLKGS AEIKRLWVAP ARGLGLGRRLMDAAE Sbjct: 181 ALDMMAPRGAFFVALSDGLPLGCVGLKGSGGAVAEIKRLWVAPAARGLGLGRRLMDAAET 240 Query: 241 AARELGIAVLRLDTNSALPEAGQLYRRTGWTEIPRFNDDPYPDLFFEKHL 290 AAR L I LRLDTNSAL EA QLYR TGWTEI RFNDDPYPDLFFEK L Sbjct: 241 AARSLSITTLRLDTNSALGEAQQLYRATGWTEIDRFNDDPYPDLFFEKRL 290 >ref|YP_002976339.1| MarR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS56800.1| transcriptional regulator, MarR family with acetyltransferase activity [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 291 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/288 (74%), Positives = 241/288 (83%) Query: 3 DPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRADVGEIRDYLGLDSGL 62 DPV+RVRRFNRAVTS VGALDTSFLGRGRPLGAARVLN+IG G++DV IRDYLGLDSGL Sbjct: 4 DPVARVRRFNRAVTSEVGALDTSFLGRGRPLGAARVLNSIGRGQSDVAVIRDYLGLDSGL 63 Query: 63 MSRLLRSLEDEELIETTAHGEDARRRIARLTAAGKREFNAYEAISNRQAKDFLAHHTQRE 122 MSRLLRSLE+E LIET + +DARRR+ARLT G+ EF AYEA+SN QAK FLA H + + Sbjct: 64 MSRLLRSLEEEGLIETLPNPQDARRRVARLTETGRSEFQAYEALSNAQAKTFLARHRRPD 123 Query: 123 ALLAAMDLIASALGRDGTALDEMDPRSDEARYCLGEYYAELARRFEKGFDVKLSRDPEAK 182 LL AMD++AS+L R+ L+E DPR ++A YCL EYY ELARRFEKGFDV LSRDP+AK Sbjct: 124 ELLRAMDIVASSLRREQILLEEKDPRHEDASYCLNEYYGELARRFEKGFDVSLSRDPDAK 183 Query: 183 DMVRPRGSFIVAMSDGLPIGCVGLKGSSSGFAEIKRLWVAPGARGLGLGRRLMDAAERAA 242 DM+RP G+F+VAMSDGLPIGCVGLKG+ AEIKRLWVAP ARGLGL RLM AAE A Sbjct: 184 DMIRPHGAFLVAMSDGLPIGCVGLKGNGGEVAEIKRLWVAPSARGLGLATRLMTAAENIA 243 Query: 243 RELGIAVLRLDTNSALPEAGQLYRRTGWTEIPRFNDDPYPDLFFEKHL 290 REL I +LRLDTNSALPEA QLYR TGW+EI RFNDDPYPD FFEK L Sbjct: 244 RELSIKLLRLDTNSALPEATQLYRGTGWSEIDRFNDDPYPDTFFEKRL 291 >ref|YP_768568.1| hypothetical protein RL2984 [Rhizobium leguminosarum bv. viciae 3841] emb|CAK08473.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 291 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/288 (75%), Positives = 240/288 (83%) Query: 3 DPVSRVRRFNRAVTSAVGALDTSFLGRGRPLGAARVLNAIGHGRADVGEIRDYLGLDSGL 62 DPVSRVRRFNRAVTS VGALDTSFLGRGRPLGAARVLN+IG G+ DV IRDYLGLDSGL Sbjct: 4 DPVSRVRRFNRAVTSEVGALDTSFLGRGRPLGAARVLNSIGRGQTDVAVIRDYLGLDSGL 63 Query: 63 MSRLLRSLEDEELIETTAHGEDARRRIARLTAAGKREFNAYEAISNRQAKDFLAHHTQRE 122 MSRLLRSLE+E LIET + +DARRR+ARLT G+ EF AYEA+SN QAK FLA H + + Sbjct: 64 MSRLLRSLEEEGLIETVPNPQDARRRVARLTETGRCEFQAYEALSNAQAKSFLARHRRPD 123 Query: 123 ALLAAMDLIASALGRDGTALDEMDPRSDEARYCLGEYYAELARRFEKGFDVKLSRDPEAK 182 LL AMD++AS+L R+ L+E DPR ++A YCL EYY ELARRFEKGFDV LSRDP+A Sbjct: 124 ELLRAMDIVASSLRREQIVLEEKDPRHEDASYCLREYYGELARRFEKGFDVSLSRDPDAM 183 Query: 183 DMVRPRGSFIVAMSDGLPIGCVGLKGSSSGFAEIKRLWVAPGARGLGLGRRLMDAAERAA 242 DM+RPRG+F+VAMSDGLPIGCVGLKG+ AEIKRLWVAP ARGLGL RLM AAE A Sbjct: 184 DMIRPRGAFLVAMSDGLPIGCVGLKGNGGEVAEIKRLWVAPSARGLGLATRLMTAAENIA 243 Query: 243 RELGIAVLRLDTNSALPEAGQLYRRTGWTEIPRFNDDPYPDLFFEKHL 290 REL I +LRLDTNSALPEA QLYR TGW+EI RFNDDPYPD FFEK L Sbjct: 244 RELSIKLLRLDTNSALPEATQLYRGTGWSEIDRFNDDPYPDTFFEKRL 291