BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0048.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_534270.1| 2-keto-3-deoxygluconate permease [Rhodopseudomo... 399 e-109 ref|YP_001861946.1| 2-keto-3-deoxygluconate permease [Burkholder... 361 9e-98 ref|YP_004360212.1| 2-keto-3-deoxygluconate permease [Burkholder... 354 1e-95 ref|YP_003905872.1| 2-keto-3-deoxygluconate permease [Burkholder... 344 8e-93 ref|YP_001586053.1| 2-keto-3-deoxygluconate permease [Burkholder... 340 2e-91 >ref|YP_534270.1| 2-keto-3-deoxygluconate permease [Rhodopseudomonas palustris BisB18] gb|ABD89951.1| 2-keto-3-deoxygluconate permease [Rhodopseudomonas palustris BisB18] Length = 346 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/252 (81%), Positives = 220/252 (87%), Gaps = 21/252 (8%) Query: 1 MQVPIKRAIESVPGGMMVVPLLVGALIATFFPDTPKFFGSFTGALFSGALTILAVFYVCM 60 MQ+PIKRAIE VPGGMM VPLL+GALI TFFP TP+FFGSFTGALFSGALTILAVFYVCM Sbjct: 1 MQIPIKRAIEKVPGGMMTVPLLIGALITTFFPGTPQFFGSFTGALFSGALTILAVFYVCM 60 Query: 61 GASIDFRATPYIVKKGGTLLIVKVGVAVVLGLIFGRILGETPVAAGMFAGVSTLAIVAAM 120 GASIDFR+TPYIVKKGGTLL VKVGVAV+LG++FGRILGE+PV GMFAG+STLAIVAAM Sbjct: 61 GASIDFRSTPYIVKKGGTLLFVKVGVAVILGVVFGRILGESPVTGGMFAGISTLAIVAAM 120 Query: 121 NDTNGGLYMALMGQYGRPRDVGAYTVMSLESGPFLTMITLGVAGLSAFPWQTLVGAILPL 180 NDTNGGLYMALMGQYGRP+DVGAYT+M+LESGPFLTM+TLGVAGLSAFPWQTLVGAILPL Sbjct: 121 NDTNGGLYMALMGQYGRPKDVGAYTIMTLESGPFLTMVTLGVAGLSAFPWQTLVGAILPL 180 Query: 181 VVGMIIGNLDREMRDFLSRAVPVMIPFFAFX---------------------VAVVAVTG 219 +VGMIIGNLDREMR FLSRAVPVMIPFFAF VAVV VTG Sbjct: 181 IVGMIIGNLDREMRAFLSRAVPVMIPFFAFALGTGLDLTKVWQAGLLGLGMGVAVVVVTG 240 Query: 220 IPLFLADRITGG 231 IPLF ADR+TGG Sbjct: 241 IPLFFADRLTGG 252 >ref|YP_001861946.1| 2-keto-3-deoxygluconate permease [Burkholderia phymatum STM815] gb|ACC74900.1| 2-keto-3-deoxygluconate permease [Burkholderia phymatum STM815] Length = 332 Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 177/252 (70%), Positives = 211/252 (83%), Gaps = 21/252 (8%) Query: 1 MQVPIKRAIESVPGGMMVVPLLVGALIATFFPDTPKFFGSFTGALFSGALTILAVFYVCM 60 +Q+PIKR+IE VPGGMM+VPLLVG+L+ATF P PKFFGSFT ALF+GAL ILAVFYVCM Sbjct: 2 VQIPIKRSIERVPGGMMIVPLLVGSLVATFLPGMPKFFGSFTNALFTGALPILAVFYVCM 61 Query: 61 GASIDFRATPYIVKKGGTLLIVKVGVAVVLGLIFGRILGETPVAAGMFAGVSTLAIVAAM 120 GASID +ATPY++KKGG LL+ KVG AV++G++ G ++GE PV++G+FAG+STLA+VAAM Sbjct: 62 GASIDVKATPYLMKKGGALLVTKVGAAVIVGVLLGHLIGEQPVSSGLFAGISTLAVVAAM 121 Query: 121 NDTNGGLYMALMGQYGRPRDVGAYTVMSLESGPFLTMITLGVAGLSAFPWQTLVGAILPL 180 NDTNGGLYMALMGQYGR DVGAYT+MSLESGPFLTM+TLGVAGLSAFPWQTLVG+ILPL Sbjct: 122 NDTNGGLYMALMGQYGRSEDVGAYTLMSLESGPFLTMVTLGVAGLSAFPWQTLVGSILPL 181 Query: 181 VVGMIIGNLDREMRDFLSRAVPVMIPFFAFX---------------------VAVVAVTG 219 +GM++GNLDR+MRDFL++AVPVMIPFFA +AVV VTG Sbjct: 182 ALGMLLGNLDRDMRDFLAKAVPVMIPFFALALGAGLDLHKVWQAGLLGIGLGIAVVIVTG 241 Query: 220 IPLFLADRITGG 231 IPL+ ADR+TGG Sbjct: 242 IPLYFADRLTGG 253 >ref|YP_004360212.1| 2-keto-3-deoxygluconate permease [Burkholderia gladioli BSR3] gb|AEA60256.1| 2-keto-3-deoxygluconate permease [Burkholderia gladioli BSR3] Length = 333 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 204/251 (81%), Gaps = 21/251 (8%) Query: 2 QVPIKRAIESVPGGMMVVPLLVGALIATFFPDTPKFFGSFTGALFSGALTILAVFYVCMG 61 Q+ IKRA+E VPGGMM+VPLL+G+LIATF PD PKFFGSFT ALF+G+L ILAVFYVCMG Sbjct: 3 QIHIKRAVERVPGGMMIVPLLIGSLIATFLPDMPKFFGSFTNALFTGSLPILAVFYVCMG 62 Query: 62 ASIDFRATPYIVKKGGTLLIVKVGVAVVLGLIFGRILGETPVAAGMFAGVSTLAIVAAMN 121 ASID +ATPY+++KGG L + KVG A+V G++ G LGE PV++G+FAG+STLA+VAAMN Sbjct: 63 ASIDVKATPYLLRKGGALFVTKVGTAIVAGVVLGHFLGEQPVSSGLFAGISTLAVVAAMN 122 Query: 122 DTNGGLYMALMGQYGRPRDVGAYTVMSLESGPFLTMITLGVAGLSAFPWQTLVGAILPLV 181 DTNGGLYMALMGQYGR DVGAYT+MSLESGPFLTM+TLGVAGLSAFPW TLVG+ILPL Sbjct: 123 DTNGGLYMALMGQYGRSEDVGAYTIMSLESGPFLTMVTLGVAGLSAFPWPTLVGSILPLA 182 Query: 182 VGMIIGNLDREMRDFLSRAVPVMIPFFAFX---------------------VAVVAVTGI 220 +GM++GNLDREMR FL RAVPVMIPFFA VAVV VTG+ Sbjct: 183 IGMLLGNLDREMRAFLGRAVPVMIPFFALALGAGLDLHKVWQAGLLGIVLGVAVVIVTGV 242 Query: 221 PLFLADRITGG 231 PLF ADR+TGG Sbjct: 243 PLFFADRLTGG 253 >ref|YP_003905872.1| 2-keto-3-deoxygluconate permease [Burkholderia sp. CCGE1003] gb|ADN56581.1| 2-keto-3-deoxygluconate permease [Burkholderia sp. CCGE1003] Length = 326 Score = 344 bits (883), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 174/249 (69%), Positives = 200/249 (80%), Gaps = 21/249 (8%) Query: 2 QVPIKRAIESVPGGMMVVPLLVGALIATFFPDTPKFFGSFTGALFSGALTILAVFYVCMG 61 Q+ IKR IE VPGGMM+VPLL+GAL+ATF P PKFFGSFT ALF+GAL ILAVFYVCMG Sbjct: 3 QIHIKRGIERVPGGMMIVPLLLGALVATFLPGMPKFFGSFTNALFTGALPILAVFYVCMG 62 Query: 62 ASIDFRATPYIVKKGGTLLIVKVGVAVVLGLIFGRILGETPVAAGMFAGVSTLAIVAAMN 121 ASID +ATPY++KKGG L KVG A+V+G++ G LGE P+++G+FAG+STLA+VAAMN Sbjct: 63 ASIDVKATPYLLKKGGALFATKVGSAIVVGVVLGHFLGEQPISSGLFAGLSTLAVVAAMN 122 Query: 122 DTNGGLYMALMGQYGRPRDVGAYTVMSLESGPFLTMITLGVAGLSAFPWQTLVGAILPLV 181 DTNGGLYMALMGQYGR DVGAYT+MSLESGPFLTM+TLGVAGLSAFPW TLVG+ILPLV Sbjct: 123 DTNGGLYMALMGQYGRSEDVGAYTIMSLESGPFLTMVTLGVAGLSAFPWPTLVGSILPLV 182 Query: 182 VGMIIGNLDREMRDFLSRAVPVMIPFFAFX---------------------VAVVAVTGI 220 GM++GNLDREMR FL +AVPVMIPFFA VAVV VTGI Sbjct: 183 FGMLLGNLDREMRAFLGKAVPVMIPFFALALGASLDLHKVWQAGILGIGLGVAVVIVTGI 242 Query: 221 PLFLADRIT 229 PL+ ADR+T Sbjct: 243 PLYFADRLT 251 >ref|YP_001586053.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans ATCC 17616] ref|YP_001941251.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans ATCC 17616] ref|ZP_03572099.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans CGD2M] ref|ZP_03578328.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans CGD2] gb|ABX19761.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans ATCC 17616] dbj|BAG47261.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans ATCC 17616] gb|EEE07534.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans CGD2] gb|EEE13907.1| 2-keto-3-deoxygluconate permease [Burkholderia multivorans CGD2M] Length = 326 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/251 (70%), Positives = 204/251 (81%), Gaps = 21/251 (8%) Query: 2 QVPIKRAIESVPGGMMVVPLLVGALIATFFPDTPKFFGSFTGALFSGALTILAVFYVCMG 61 Q+ IKR IE VPGGMM+VPLLVGAL+ATF PD PKFFGSFT ALF+GAL ILAVFYVCMG Sbjct: 3 QIHIKRGIERVPGGMMIVPLLVGALVATFLPDMPKFFGSFTNALFTGALPILAVFYVCMG 62 Query: 62 ASIDFRATPYIVKKGGTLLIVKVGVAVVLGLIFGRILGETPVAAGMFAGVSTLAIVAAMN 121 ASID +ATPY++KKGG L + KVG A+V+G++ G LGE P+++G+FAG+STLA+VAAMN Sbjct: 63 ASIDVKATPYLLKKGGALFVTKVGAAIVVGVVMGHFLGEQPISSGLFAGLSTLAVVAAMN 122 Query: 122 DTNGGLYMALMGQYGRPRDVGAYTVMSLESGPFLTMITLGVAGLSAFPWQTLVGAILPLV 181 DTNGGLYMALMGQYGR DVGAYT+MSLESGPFLTM+TLGVAGLSAFPW TLVG+ILPL Sbjct: 123 DTNGGLYMALMGQYGRSEDVGAYTIMSLESGPFLTMVTLGVAGLSAFPWPTLVGSILPLA 182 Query: 182 VGMIIGNLDREMRDFLSRAVPVMIPFFAFX---------------------VAVVAVTGI 220 GM++GNLDREMR FL +AVPVMIPFFA +AVV VTGI Sbjct: 183 FGMLLGNLDREMRAFLGKAVPVMIPFFALALGASLDLHKVWQAGVLGVGLGIAVVIVTGI 242 Query: 221 PLFLADRITGG 231 PL+LADR+TGG Sbjct: 243 PLYLADRLTGG 253