BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0042.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08630877.1| protocatechuate 3,4-dioxygenase beta chain [B...   305   1e-81
ref|NP_767567.1| protocatechuate 3,4-dioxygenase subunit beta [B...   299   8e-80
gb|ABC50028.1| protocatechuate 3,4-dioxygenase beta subunit [unc...   254   2e-66
gb|ABC50084.1| protocatechuate 3,4-dioxygenase beta subunit [unc...   254   3e-66
gb|ABC50027.1| protocatechuate 3,4-dioxygenase beta subunit [unc...   253   5e-66

>ref|ZP_08630877.1| protocatechuate 3,4-dioxygenase beta chain [Bradyrhizobiaceae
           bacterium SG-6C]
 gb|EGP06409.1| protocatechuate 3,4-dioxygenase beta chain [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 235

 Score =  305 bits (782), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 138/153 (90%), Positives = 150/153 (98%)

Query: 1   VRDEDGRGVPNTLVELWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDAQGYYKFTTIK 60
           VRDEDGRGVPNTL+E+WQANACGRYIHVVDQHPAP+DPNFTGAGRAQTDA+GYY+F TIK
Sbjct: 81  VRDEDGRGVPNTLLEIWQANACGRYIHVVDQHPAPIDPNFTGAGRAQTDARGYYRFVTIK 140

Query: 61  PGAYPWGNHHNAWRPAHIHFSVFGHSFISRLVTQMYFPGDPLFPFDPIFNSVTDEKARAR 120
           PGAYPWGNHHNAWRPAHIHFSVFG+SFISR+VTQMYFPGDPLF +DPIFNSVTDEKAR R
Sbjct: 141 PGAYPWGNHHNAWRPAHIHFSVFGYSFISRIVTQMYFPGDPLFAYDPIFNSVTDEKARMR 200

Query: 121 MISSFDLENTKPEWALCYRFDIVLRGRNATPME 153
           M+SSFDLENTKP+WALCYRFDIVLRGRNATP++
Sbjct: 201 MVSSFDLENTKPDWALCYRFDIVLRGRNATPLD 233


>ref|NP_767567.1| protocatechuate 3,4-dioxygenase subunit beta [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC46192.1| protocatechuate 3,4-dioxygenase beta chain [Bradyrhizobium
           japonicum USDA 110]
          Length = 248

 Score =  299 bits (766), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 134/153 (87%), Positives = 145/153 (94%)

Query: 1   VRDEDGRGVPNTLVELWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDAQGYYKFTTIK 60
           V DEDGRGVPN+LVE+WQAN+CGRY+HV DQHPAPLDPNFTGAGR Q+DA GYY+F TIK
Sbjct: 94  VLDEDGRGVPNSLVEIWQANSCGRYVHVRDQHPAPLDPNFTGAGRTQSDASGYYRFVTIK 153

Query: 61  PGAYPWGNHHNAWRPAHIHFSVFGHSFISRLVTQMYFPGDPLFPFDPIFNSVTDEKARAR 120
           PGAYPWGNHHNAWRPAHIH SVFGHSF++RLVTQMYFP DPLFPFDPIFNSV DEKARAR
Sbjct: 154 PGAYPWGNHHNAWRPAHIHLSVFGHSFVTRLVTQMYFPADPLFPFDPIFNSVPDEKARAR 213

Query: 121 MISSFDLENTKPEWALCYRFDIVLRGRNATPME 153
           M+SSFDLENT+PEWALCYRFDIVLRG+NATPME
Sbjct: 214 MVSSFDLENTQPEWALCYRFDIVLRGKNATPME 246


>gb|ABC50028.1| protocatechuate 3,4-dioxygenase beta subunit [uncultured bacterium]
          Length = 132

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/132 (88%), Positives = 124/132 (93%)

Query: 15  ELWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDAQGYYKFTTIKPGAYPWGNHHNAWR 74
           E+WQANACGRYIHVVDQHPAPLDPNFTGAGRAQTD  GYY+F TIKPGAYPWGNH NAWR
Sbjct: 1   EVWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDGAGYYRFITIKPGAYPWGNHPNAWR 60

Query: 75  PAHIHFSVFGHSFISRLVTQMYFPGDPLFPFDPIFNSVTDEKARARMISSFDLENTKPEW 134
           PAHIHFSVFGH+FISR+VTQMYFPGDPLF +DPIFNSVTDE AR RM+SSFDLENTKP+W
Sbjct: 61  PAHIHFSVFGHAFISRIVTQMYFPGDPLFAYDPIFNSVTDENARMRMVSSFDLENTKPDW 120

Query: 135 ALCYRFDIVLRG 146
           ALCYRFDIVL G
Sbjct: 121 ALCYRFDIVLHG 132


>gb|ABC50084.1| protocatechuate 3,4-dioxygenase beta subunit [uncultured bacterium]
          Length = 132

 Score =  254 bits (649), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/132 (88%), Positives = 124/132 (93%)

Query: 15  ELWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDAQGYYKFTTIKPGAYPWGNHHNAWR 74
           E+WQANACGRYIHVVDQHPAPLDPNFTGAGRAQTD  GYY+F TIKPGAYPWGNH NAWR
Sbjct: 1   EVWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDGVGYYRFITIKPGAYPWGNHPNAWR 60

Query: 75  PAHIHFSVFGHSFISRLVTQMYFPGDPLFPFDPIFNSVTDEKARARMISSFDLENTKPEW 134
           PAHIHFSVFGH+FISR+VTQMYFPGDPLF +DPIFNSVTDE AR RM+SSFDLENTKP+W
Sbjct: 61  PAHIHFSVFGHAFISRIVTQMYFPGDPLFAYDPIFNSVTDENARMRMVSSFDLENTKPDW 120

Query: 135 ALCYRFDIVLRG 146
           ALCYRFDIVL G
Sbjct: 121 ALCYRFDIVLHG 132


>gb|ABC50027.1| protocatechuate 3,4-dioxygenase beta subunit [uncultured bacterium]
          Length = 131

 Score =  253 bits (647), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 124/130 (95%)

Query: 15  ELWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDAQGYYKFTTIKPGAYPWGNHHNAWR 74
           E+WQANACGRYIHVVDQHPAPLDPNFTGAGRAQTD+ GYY+F TIKPGAYPWGNH NAWR
Sbjct: 1   EVWQANACGRYIHVVDQHPAPLDPNFTGAGRAQTDSAGYYRFITIKPGAYPWGNHPNAWR 60

Query: 75  PAHIHFSVFGHSFISRLVTQMYFPGDPLFPFDPIFNSVTDEKARARMISSFDLENTKPEW 134
           PAHIHFSVFGH+FISR+VTQMYFPGDPLF +DPIFNSVTDE AR RM+SSFDLENTKP+W
Sbjct: 61  PAHIHFSVFGHAFISRIVTQMYFPGDPLFAYDPIFNSVTDENARMRMVSSFDLENTKPDW 120

Query: 135 ALCYRFDIVL 144
           ALCYRFDIVL
Sbjct: 121 ALCYRFDIVL 130