BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0039.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767561.1| hypothetical protein blr0921 [Bradyrhizobium ja... 381 e-104 ref|YP_001243394.1| hypothetical protein BBta_7643 [Bradyrhizobi... 357 1e-96 ref|YP_001202717.1| hypothetical protein BRADO0535 [Bradyrhizobi... 357 1e-96 ref|YP_002287139.1| hypothetical protein [Oligotropha carboxidov... 203 3e-50 ref|YP_002500495.1| hypothetical protein Mnod_5347 [Methylobacte... 115 7e-24 >ref|NP_767561.1| hypothetical protein blr0921 [Bradyrhizobium japonicum USDA 110] dbj|BAC46186.1| blr0921 [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/266 (74%), Positives = 231/266 (86%), Gaps = 1/266 (0%) Query: 1 MSPELHFVLILVLRMAVAAAFVVSASIITERSGPVIGALIATLPISAGPSYTFLALDHDA 60 MSPELHF+L L+LRMA+AAAFVV+ASIITERSGPVIGALIATLP+SAGPSY FLA+DHDA Sbjct: 1 MSPELHFILFLLLRMAIAAAFVVTASIITERSGPVIGALIATLPVSAGPSYVFLAIDHDA 60 Query: 61 AFIAEGALASLPVNAATIYMGLTYAVLAQRFSMWISAGSAIAVWLVLATIIRQFEWSLAA 120 AFIA+GALASLPVNAATI+M LTY VL+QR ++ +S GSA+AVW+ LA+IIRQF+WSL A Sbjct: 61 AFIAQGALASLPVNAATIFMCLTYVVLSQRHNLAVSCGSAVAVWIGLASIIRQFDWSLTA 120 Query: 121 GLIVNAITFAICIPLLKPYRHVAKMPLIARRWYDIPLRAALVASLVGTVVTASGWVGPRV 180 GL N I F ICIPLL YRHV KMPL+ RRWYD+P+RAALVA+LV VV+ S WVGPR+ Sbjct: 121 GLAANLIAFGICIPLLAGYRHV-KMPLVTRRWYDVPMRAALVATLVAIVVSTSSWVGPRI 179 Query: 181 TGVMALFPIVFSSMMLILHPRIGGPATAAVLANSAWGLMGFGLGVAVLHVAVLQFGSPIG 240 +G++AL+P+VFSSMM+ILHPRIGGP TAAVLANSAWGL+GFG+ VAV+HVAV+QFG +G Sbjct: 180 SGIIALYPVVFSSMMVILHPRIGGPPTAAVLANSAWGLLGFGMAVAVMHVAVVQFGLAVG 239 Query: 241 LCCALATCIVWNLVLWRIGRRKSGKA 266 L AL TC+ WNL LW IGRR KA Sbjct: 240 LSLALGTCVTWNLTLWGIGRRAMRKA 265 >ref|YP_001243394.1| hypothetical protein BBta_7643 [Bradyrhizobium sp. BTAi1] gb|ABQ39488.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 266 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 177/263 (67%), Positives = 220/263 (83%), Gaps = 1/263 (0%) Query: 1 MSPELHFVLILVLRMAVAAAFVVSASIITERSGPVIGALIATLPISAGPSYTFLALDHDA 60 MS + F+L+L LRMA+AA+FVVSAS+I ER+GPVIGAL+ATLPISAGP+Y FLALDHDA Sbjct: 1 MSLDPSFLLLLGLRMAIAASFVVSASMIAERTGPVIGALVATLPISAGPTYVFLALDHDA 60 Query: 61 AFIAEGALASLPVNAATIYMGLTYAVLAQRFSMWISAGSAIAVWLVLATIIRQFEWSLAA 120 AFIAEGAL SLP+NAATI++ L YAVLAQR S+WI++ +A+AVWL LA++I+ +W+LA Sbjct: 61 AFIAEGALTSLPINAATIFLSLAYAVLAQRHSVWIASATAVAVWLGLASLIKSVQWTLAM 120 Query: 121 GLIVNAITFAICIPLLKPYRHVAKMPLIARRWYDIPLRAALVASLVGTVVTASGWVGPRV 180 G++ N ITFAIC+PLL+ YRH AKMPL+ RRWYD+PLRA+LVA+LV TV + SGW GP V Sbjct: 121 GIVANIITFAICLPLLQRYRH-AKMPLLTRRWYDVPLRASLVATLVATVTSVSGWAGPSV 179 Query: 181 TGVMALFPIVFSSMMLILHPRIGGPATAAVLANSAWGLMGFGLGVAVLHVAVLQFGSPIG 240 +G++ALFPIVF+SMMLIL PRIGG ATAAV+AN AWGL+GF L V VLH+ L G+ G Sbjct: 180 SGILALFPIVFTSMMLILQPRIGGSATAAVMANGAWGLIGFSLAVVVLHLGSLHLGAVAG 239 Query: 241 LCCALATCIVWNLVLWRIGRRKS 263 L ALATC+ WNL LW +GR+ + Sbjct: 240 LSGALATCVGWNLGLWWLGRKTA 262 >ref|YP_001202717.1| hypothetical protein BRADO0535 [Bradyrhizobium sp. ORS 278] emb|CAL74474.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 263 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/262 (67%), Positives = 219/262 (83%), Gaps = 1/262 (0%) Query: 1 MSPELHFVLILVLRMAVAAAFVVSASIITERSGPVIGALIATLPISAGPSYTFLALDHDA 60 M + F+L+L LRMA+AA+FVVSAS+I ER+GPVIGAL+ATLPISAGP+Y FLALDHDA Sbjct: 1 MPFDSSFLLLLGLRMAIAASFVVSASMIAERTGPVIGALVATLPISAGPTYVFLALDHDA 60 Query: 61 AFIAEGALASLPVNAATIYMGLTYAVLAQRFSMWISAGSAIAVWLVLATIIRQFEWSLAA 120 AFIA+GAL SLPVNAATI++ L YAVLAQR S+W+++ +A+AVWL LA++I+ +W+LA Sbjct: 61 AFIAQGALTSLPVNAATIFLSLAYAVLAQRHSVWVASATAVAVWLGLASLIKSVQWTLAM 120 Query: 121 GLIVNAITFAICIPLLKPYRHVAKMPLIARRWYDIPLRAALVASLVGTVVTASGWVGPRV 180 G++ N +TF IC+PLL+ YRH AKMPLI RRWYD+PLRA+LVA+LV TV + SGW GP V Sbjct: 121 GIVANIVTFVICLPLLQRYRH-AKMPLIVRRWYDVPLRASLVATLVATVTSVSGWAGPGV 179 Query: 181 TGVMALFPIVFSSMMLILHPRIGGPATAAVLANSAWGLMGFGLGVAVLHVAVLQFGSPIG 240 +G++ALFPIVF+SMMLIL PRIGGPATAAV+AN AWGL+GF L V VLH+ L G+ G Sbjct: 180 SGILALFPIVFTSMMLILQPRIGGPATAAVMANGAWGLIGFSLAVVVLHLGSLHLGAVAG 239 Query: 241 LCCALATCIVWNLVLWRIGRRK 262 L ALATC+ WNL LW +GRR+ Sbjct: 240 LSGALATCVGWNLGLWALGRRR 261 >ref|YP_002287139.1| hypothetical protein [Oligotropha carboxidovorans OM5] ref|YP_004631354.1| hypothetical protein OCA5_c03880 [Oligotropha carboxidovorans OM5] gb|ACI91274.1| putative membrane protein of unknown function [Oligotropha carboxidovorans OM5] gb|AEI01538.1| hypothetical protein OCA4_c03870 [Oligotropha carboxidovorans OM4] gb|AEI05113.1| hypothetical protein OCA5_c03880 [Oligotropha carboxidovorans OM5] Length = 264 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 116/262 (44%), Positives = 166/262 (63%), Gaps = 4/262 (1%) Query: 1 MSPELHFVLILVLRMAVAAAFVVSASIITERSGPVIGALIATLPISAGPSYTFLALDHDA 60 M + +F+L L L++ VAA FV+ A++I ER+G IG+LI TLP+S GP+Y F+ALDH+A Sbjct: 1 MPADGYFLLTLALKVVVAAGFVIVATVIAERAGAFIGSLIVTLPVSTGPAYIFIALDHEA 60 Query: 61 AFIAEGALASLPVNAATIYMGLTYAVLAQRFSMWISAGSAIAVWLVLATIIRQFEWSLAA 120 +F+A AL S+ N T + T+ ++AQRF W+S + VW ++ + Q W+L Sbjct: 61 SFVARAALTSVYNNVPTAFYTATFVIMAQRFGPWLSVAVGLLVWFMMTYLFSQTAWTLTP 120 Query: 121 GLIVNAITFAICIPLLKPYRHVAKMPLIARRWYDIPLRAALVASLVGTVVTASGWVGPRV 180 + N + A L++ +R A MP + RW D+ LRA LV L+ VVT S +GP Sbjct: 121 AIAANVVVVAAFFFLVRAFRE-APMPRLPMRWSDLLLRAVLVGVLIAAVVTLSFTIGPEK 179 Query: 181 TGVMALFPIVFSSMMLILHPRIGGPATAAVLANSAWGLMGFGLGVAVLHVAVLQFGSPIG 240 TG++A FP F++ MLILH R+GG ATAAV+A+S GL+GFGL +AVL++A + G P+ Sbjct: 180 TGILASFPATFTATMLILHRRVGGKATAAVMAHSLVGLLGFGLCMAVLNLAAVPIGPPLA 239 Query: 241 LCCALATCIVWN---LVLWRIG 259 LC A I WN L+L R G Sbjct: 240 LCLAFLFSISWNAATLLLRRAG 261 >ref|YP_002500495.1| hypothetical protein Mnod_5347 [Methylobacterium nodulans ORS 2060] gb|ACL60192.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 269 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 127/224 (56%) Query: 30 ERSGPVIGALIATLPISAGPSYTFLALDHDAAFIAEGALASLPVNAATIYMGLTYAVLAQ 89 ER+ P++GA+IATLP+SAGP+Y FLAL+H F+ E A+ASLP AAT L YA LA+ Sbjct: 28 ERASPLVGAMIATLPLSAGPAYLFLALEHGPDFVRESAVASLPAAAATGLFILVYAALAR 87 Query: 90 RFSMWISAGSAIAVWLVLATIIRQFEWSLAAGLIVNAITFAICIPLLKPYRHVAKMPLIA 149 R S +A+ VW A I+R LAA + + C+ + R K+P Sbjct: 88 RRGPVPSLAAALLVWGAAAPILRHLAPGLAAAASLATLVLLACMAAGRAIRPHGKVPQRR 147 Query: 150 RRWYDIPLRAALVASLVGTVVTASGWVGPRVTGVMALFPIVFSSMMLILHPRIGGPATAA 209 R D+ +RA +V LV VV A GP + G +AL P+V S+ +ILHP++GG A A Sbjct: 148 GRQRDVAIRAGIVMLLVAVVVVAGRVAGPGLAGTLALAPVVMVSLAVILHPQLGGQAAAT 207 Query: 210 VLANSAWGLMGFGLGVAVLHVAVLQFGSPIGLCCALATCIVWNL 253 VL S G++GF + +L + V G IGL AL + WNL Sbjct: 208 VLILSLPGMLGFVAALTLLALTVGPLGPAIGLPLALLVTVTWNL 251