BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0036.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767558.1| ABC transporter permease protein [Bradyrhizobiu... 442 e-122 ref|YP_002287142.1| aliphatic sulfonates transport permease SsuC... 417 e-114 ref|YP_567255.1| binding-protein-dependent transport systems inn... 403 e-110 ref|ZP_07026072.1| binding-protein-dependent transport systems i... 400 e-109 ref|NP_947965.1| sulfonate ABC transporter permease [Rhodopseudo... 397 e-109 >ref|NP_767558.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46183.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 335 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/278 (82%), Positives = 253/278 (91%), Gaps = 4/278 (1%) Query: 1 MAMTVDLPALEQAAPPG----ASARWSRHARPVLGLVLPVALALGWELVVALGYSNGRLV 56 MAM D PAL++++ P A +R +R+ARPVLG++LP+ALALGWELVV G+SNGRLV Sbjct: 53 MAMISDAPALQRSSEPAEGAAAPSRIARYARPVLGVLLPLALALGWELVVWSGWSNGRLV 112 Query: 57 PPPSKVFETIVELAKSGELSRHILATLWRVGAGFALGVVAGTILGAISGYWDFAKRLLDP 116 PPPS+VF TI +LA+SGEL RHI ATLWRVG GFA GVVAGT+LGAISGYW A+RLLDP Sbjct: 113 PPPSRVFVTITDLARSGELVRHIAATLWRVGLGFAFGVVAGTLLGAISGYWSLARRLLDP 172 Query: 117 TVQALRAIPSLAWVPLFVLWLGIFETSKVALIAVGVFFPIYLGVMGAILSVDRKVVEVGR 176 TVQALRAIPSLAWVPLF+LWLGIFETSK+ALIAVGVFFP+YLGVMGAILSVDRK+VEVGR Sbjct: 173 TVQALRAIPSLAWVPLFILWLGIFETSKIALIAVGVFFPVYLGVMGAILSVDRKIVEVGR 232 Query: 177 VFRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLG 236 FRLSGPAMIRRILLPAVLPAYVV+LRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLG Sbjct: 233 TFRLSGPAMIRRILLPAVLPAYVVSLRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLG 292 Query: 237 KPAQILAAIVIFAILGKLTDWLIEVAAAPLLRWQDAFG 274 KPAQILAAIVIFA+LGKLTDWLIEV +AP LRWQD FG Sbjct: 293 KPAQILAAIVIFAMLGKLTDWLIEVGSAPFLRWQDGFG 330 >ref|YP_002287142.1| aliphatic sulfonates transport permease SsuC [Oligotropha carboxidovorans OM5] ref|YP_004631351.1| aliphatic sulfonate ABC transporter permease [Oligotropha carboxidovorans OM5] gb|ACI91277.1| putative aliphatic sulfonates transport permease protein SsuC [Oligotropha carboxidovorans OM5] gb|AEI01535.1| ABC transporter, putative aliphatic sulfonates permease [Oligotropha carboxidovorans OM4] gb|AEI05110.1| ABC transporter, putative aliphatic sulfonates permease [Oligotropha carboxidovorans OM5] Length = 281 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/282 (75%), Positives = 248/282 (87%), Gaps = 5/282 (1%) Query: 1 MAMTVDL---PALEQAAPPGASARWSRHARPVLGLVLPVALALGWELVVALGYSNGRLVP 57 MAMT++ PA++ AA P S RWSR A+P LGL++PV +A+GWEL VA+G SNGRLVP Sbjct: 1 MAMTLETSSAPAIDVAAAP--SRRWSRWAKPALGLIVPVVIAVGWELAVAVGLSNGRLVP 58 Query: 58 PPSKVFETIVELAKSGELSRHILATLWRVGAGFALGVVAGTILGAISGYWDFAKRLLDPT 117 PPSK+FE + ELA+SGEL RHI T WRVGAGF LGV+ GT+LGA+ GY A+RLLDPT Sbjct: 59 PPSKIFEMMEELARSGELWRHIFITSWRVGAGFGLGVLFGTVLGAVCGYSALARRLLDPT 118 Query: 118 VQALRAIPSLAWVPLFVLWLGIFETSKVALIAVGVFFPIYLGVMGAILSVDRKVVEVGRV 177 +QALRAIPS+AWVPLF+LWLGIFE SKVALIAVGVFFPIYLG+MGA+L VDRK+VEVGR Sbjct: 119 LQALRAIPSIAWVPLFILWLGIFEMSKVALIAVGVFFPIYLGLMGAVLGVDRKIVEVGRT 178 Query: 178 FRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLGK 237 FRLSGPAMIRRILLPAVLP+YVV+LR GLGLGWMFVVAAEL+GASEGLGYLL+DGQQLGK Sbjct: 179 FRLSGPAMIRRILLPAVLPSYVVSLRSGLGLGWMFVVAAELMGASEGLGYLLIDGQQLGK 238 Query: 238 PAQILAAIVIFAILGKLTDWLIEVAAAPLLRWQDAFGARGGQ 279 PA+ILAAI++FA+LGK TDWLI+V APLLRWQDAF ++GG+ Sbjct: 239 PAEILAAIIVFALLGKFTDWLIQVGFAPLLRWQDAFSSQGGK 280 >ref|YP_567255.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE37354.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 286 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/243 (83%), Positives = 225/243 (92%) Query: 37 ALALGWELVVALGYSNGRLVPPPSKVFETIVELAKSGELSRHILATLWRVGAGFALGVVA 96 +ALGWEL+V GYSNGRLVPPPSKVF I ELAKSGELSRHI+AT+ RV +GF LGV+A Sbjct: 43 TIALGWELLVHFGYSNGRLVPPPSKVFAIIAELAKSGELSRHIVATVGRVASGFGLGVLA 102 Query: 97 GTILGAISGYWDFAKRLLDPTVQALRAIPSLAWVPLFVLWLGIFETSKVALIAVGVFFPI 156 GT+LGA+SGYW A++LLDPTVQALRAIPS+AWVPLF+LWLGIFETSKVALIAVGVFFP+ Sbjct: 103 GTVLGAVSGYWGLARQLLDPTVQALRAIPSIAWVPLFILWLGIFETSKVALIAVGVFFPV 162 Query: 157 YLGVMGAILSVDRKVVEVGRVFRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAA 216 YLGVMGAI SVDRK+VEVGR FRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAA Sbjct: 163 YLGVMGAIRSVDRKIVEVGRAFRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAA 222 Query: 217 ELIGASEGLGYLLLDGQQLGKPAQILAAIVIFAILGKLTDWLIEVAAAPLLRWQDAFGAR 276 E +GASEGLG+LL+DGQQLGKPAQI+AAIVIFA+LGK TDWLIE+A+APLLRWQDAFG Sbjct: 223 EFMGASEGLGFLLIDGQQLGKPAQIVAAIVIFALLGKTTDWLIEIASAPLLRWQDAFGRH 282 Query: 277 GGQ 279 G+ Sbjct: 283 EGE 285 >ref|ZP_07026072.1| binding-protein-dependent transport systems inner membrane component [Afipia sp. 1NLS2] gb|EFI53214.1| binding-protein-dependent transport systems inner membrane component [Afipia sp. 1NLS2] Length = 279 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/260 (75%), Positives = 235/260 (90%) Query: 20 ARWSRHARPVLGLVLPVALALGWELVVALGYSNGRLVPPPSKVFETIVELAKSGELSRHI 79 +R R +P LGL++P+ + +GWE+ VA G+SNGRLVPPPSK++E + +LAKSGELSRH+ Sbjct: 19 SRPPRWIKPALGLIVPLVVGIGWEIAVARGWSNGRLVPPPSKIYEMLAQLAKSGELSRHV 78 Query: 80 LATLWRVGAGFALGVVAGTILGAISGYWDFAKRLLDPTVQALRAIPSLAWVPLFVLWLGI 139 T WRVGAGF LGVV+GT+LGA+ GY A+RLLDPT+QALRAIPS+AWVPLFVLWLGI Sbjct: 79 FITTWRVGAGFGLGVVSGTLLGALCGYSPLARRLLDPTLQALRAIPSIAWVPLFVLWLGI 138 Query: 140 FETSKVALIAVGVFFPIYLGVMGAILSVDRKVVEVGRVFRLSGPAMIRRILLPAVLPAYV 199 FE SKVALIA+GVFFPIYLGVMGA+LSVDRK+VEVGR+FRLSGPAMIRRILLPAVLP+YV Sbjct: 139 FEMSKVALIAIGVFFPIYLGVMGAVLSVDRKIVEVGRIFRLSGPAMIRRILLPAVLPSYV 198 Query: 200 VALRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLGKPAQILAAIVIFAILGKLTDWLI 259 V+LR GLGLGWMFVVAAEL+GASEGLGYLL+DGQQLGKPA+ILAAI++FA+LGK TDWL+ Sbjct: 199 VSLRQGLGLGWMFVVAAELMGASEGLGYLLIDGQQLGKPAEILAAIIVFALLGKTTDWLV 258 Query: 260 EVAAAPLLRWQDAFGARGGQ 279 ++A APLLRWQDAF ++ G+ Sbjct: 259 QLAFAPLLRWQDAFSSQAGR 278 >ref|NP_947965.1| sulfonate ABC transporter permease [Rhodopseudomonas palustris CGA009] emb|CAE28064.1| possible sulfonate transport system permease protein. Subunit of an ABC transporter [Rhodopseudomonas palustris CGA009] Length = 280 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/279 (75%), Positives = 240/279 (86%) Query: 1 MAMTVDLPALEQAAPPGASARWSRHARPVLGLVLPVALALGWELVVALGYSNGRLVPPPS 60 M +T+D A A P A R R P LGL+LP+ +A+GWE V LG+SNGRLVPPPS Sbjct: 1 MTLTLDNAAPVTTAAPSAQRRAPRWRGPALGLLLPLTVAVGWEAAVYLGWSNGRLVPPPS 60 Query: 61 KVFETIVELAKSGELSRHILATLWRVGAGFALGVVAGTILGAISGYWDFAKRLLDPTVQA 120 +VF TI ELA++GEL+RH+ ATL RV AGF LGV++GT+LGA++GYW A+RLLD TVQA Sbjct: 61 RVFSTITELARTGELTRHVAATLGRVAAGFGLGVLSGTLLGAVAGYWSLARRLLDSTVQA 120 Query: 121 LRAIPSLAWVPLFVLWLGIFETSKVALIAVGVFFPIYLGVMGAILSVDRKVVEVGRVFRL 180 LRAIPS+AWVPLF+LWLGIFETSKVALIAVGVFFP+YLGVMGAI SVDRK+VEVGR FRL Sbjct: 121 LRAIPSIAWVPLFILWLGIFETSKVALIAVGVFFPVYLGVMGAIRSVDRKIVEVGRAFRL 180 Query: 181 SGPAMIRRILLPAVLPAYVVALRVGLGLGWMFVVAAELIGASEGLGYLLLDGQQLGKPAQ 240 SGPAMIRRILLPAVLPAYV+ALRVGLGLGWMFVVAAE +GASEGLG+LL+DGQQLGKPAQ Sbjct: 181 SGPAMIRRILLPAVLPAYVLALRVGLGLGWMFVVAAEFMGASEGLGFLLIDGQQLGKPAQ 240 Query: 241 ILAAIVIFAILGKLTDWLIEVAAAPLLRWQDAFGARGGQ 279 I+AAIVIFA+LGK TDWLIE+A PLLRWQDAFG G+ Sbjct: 241 IVAAIVIFAVLGKTTDWLIEIATLPLLRWQDAFGRHDGE 279