BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0031.p (477 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769089.1| hypothetical protein bll2449 [Bradyrhizobium ja... 504 e-140 ref|YP_004675335.1| hypothetical protein HYPMC_1531 [Hyphomicrob... 268 1e-69 ref|YP_003754639.1| hypothetical protein Hden_0497 [Hyphomicrobi... 258 2e-66 ref|NP_768349.1| hypothetical protein blr1709 [Bradyrhizobium ja... 252 9e-65 ref|ZP_01547007.1| hypothetical protein SIAM614_04160 [Stappia a... 197 3e-48 >ref|NP_769089.1| hypothetical protein bll2449 [Bradyrhizobium japonicum USDA 110] dbj|BAC47714.1| bll2449 [Bradyrhizobium japonicum USDA 110] Length = 525 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 288/436 (66%), Positives = 344/436 (78%), Gaps = 6/436 (1%) Query: 35 PLPEDNNSVTKGEAEGARGLQRDLQERLQPEHDEPVSDSAPHPEAPAGSGRIVRRLLKVG 94 P P + S TK +A +GLQ L E+L + + + A P +RR K+ Sbjct: 89 PSPHETKSETKTDA---KGLQEALHEQLFADDETGHACEAQTAPEPGPRWPHLRRGAKIA 145 Query: 95 IGLAIVAVFGWLPLRAVLQTSSVEAVVNARIVTLRSPIDGTVSAKPQKSTQLSVVREGDA 154 IGLAI+AVFGWLPLRA+ + SSVEAV+N+R+VTLR+PI G V A Q T + + G Sbjct: 146 IGLAIIAVFGWLPLRAIWEYSSVEAVLNSRLVTLRTPIGGRVVAA-QPITDQAKLDAGTV 204 Query: 155 ILHVVNARGDRARLDDLRRQMSRLENERPSLAAKLAAAETAQQDLARQAGQFRDGRILQL 214 +L VVN+RGDR RLDDLRRQ SRLE ERPS+AAKLAAA+ AQ+DLARQA QFR+GR+LQL Sbjct: 205 LLRVVNSRGDRTRLDDLRRQKSRLEIERPSVAAKLAAAQAAQKDLARQATQFREGRVLQL 264 Query: 215 EARIAEIQTAIEAAAARREEAVAAVERASSLIKSGSVSTVEMARLTREQAISQQTEIGAR 274 EARIAEIQT+IEAAAARR+EA AAVERASSL KSG+VSTVE+ARLTRE +++QQTE+GAR Sbjct: 265 EARIAEIQTSIEAAAARRDEASAAVERASSLAKSGNVSTVELARLTRELSVAQQTELGAR 324 Query: 275 RRLDAAKVELTAVRNGTYLGDSYNDRPSSVQREEEMRQRVSDLRADLAHADAEIGWLTHE 334 +RLDAAKVELTA +NG++LGDSYNDRPSSVQREEEMRQR DL ADLA D EI WL +E Sbjct: 325 KRLDAAKVELTAAQNGSFLGDSYNDRPSSVQREEEMRQRAGDLEADLARTDTEIAWLANE 384 Query: 335 IAAEQLHYVNRAEADIKAPVGGRIWEMMTSPGEDVRAGQPLLKLLDCSGAVVTANVTESV 394 I E+ + + +EA+I PV GR+WEMMTSPGEDV+AGQPLLK+LDCSGAV+TANVTE+V Sbjct: 385 IIIEEARFADLSEANITTPVAGRVWEMMTSPGEDVQAGQPLLKILDCSGAVITANVTENV 444 Query: 395 YNGLKLGEQASFEPNDGSAALQGEIVNLTGASGAPANLAINPDALNKEPYRVTVSMPALD 454 YN L+LG++ASFEPNDG + G +VNLTGA+GAPANLAINPDAL+KEPYRVTV+ P D Sbjct: 445 YNRLQLGDRASFEPNDGGEPISGTVVNLTGAAGAPANLAINPDALSKEPYRVTVA-PG-D 502 Query: 455 TTGKDCAVGRTGRVVF 470 C VGRTGRVVF Sbjct: 503 AAAHACTVGRTGRVVF 518 >ref|YP_004675335.1| hypothetical protein HYPMC_1531 [Hyphomicrobium sp. MC1] emb|CCB64761.1| conserved protein of unknown function [Hyphomicrobium sp. MC1] Length = 485 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 157/384 (40%), Positives = 226/384 (58%), Gaps = 7/384 (1%) Query: 90 LLKVGIGLAIVAVFGWLPLRAVLQTSSVEAVVNARIVTLRSPIDGTVSAKPQKSTQLSVV 149 LLK + +A+ GW P++ +L T+S EAVVNARI+T+R+PI+G V+ + S Sbjct: 94 LLKSLVAVAVAIALGWFPVQRLLATTSAEAVVNARIITIRAPIEGEVTMAQNGTDIGSPF 153 Query: 150 REGDAILHVVNARGDRARLDDLRRQMSRLENERPSLAAKLAAAETAQQDLARQAGQFRDG 209 R IL + N R D L +L+R +L +L AK ++ ++L Q +FR G Sbjct: 154 RADQNILTIRNTRADSVHLTNLQRDRDQLRTNIGALEAKKNLLRSSLEELNAQQERFRLG 213 Query: 210 RILQLEARIAEIQTAIEAAAARREEAVAAVERASSLIKSGSVSTVEMARLTREQAISQQT 269 RI QLE R+ E I +A A+ A A++RA++L K+ + S A L + Q + T Sbjct: 214 RIAQLEQRVREADANIASAQAQYAVASEALKRAAALRKTDAAS---QAFLDKAQGEAHVT 270 Query: 270 EIGARRRLDAAK---VELTAVRNGTYLGDSYNDRPSSVQREEEMRQRVSDLRADLAHADA 326 E + +++ K VEL A +NGTY+GDSYND P S QR+ E+ +SD++A L + Sbjct: 271 EQAIQAQIEHKKGILVELNAAKNGTYVGDSYNDTPQSAQRKMEVSLELSDVQARLDGSQI 330 Query: 327 EIGWLTHEIAAEQLHYVNRAEADIKAPVGGRIWEMMTSPGEDVRAGQPLLKLLDCSGAVV 386 + + IAAEQ A+ADI A V GR+WEM+T+PGE V AGQ L+KLLDC A+V Sbjct: 331 QFAAIDASIAAEQARQAELAKADIHASVNGRVWEMLTAPGEHVNAGQDLMKLLDCGSAIV 390 Query: 387 TANVTESVYNGLKLGEQASFEPNDGSAALQGEIVNLTGASGAPANLAINPDALNKEPYRV 446 TA+V+E+ Y L +G+ A+F P DG L G +V L G + +N AI AL++EPY V Sbjct: 391 TASVSETAYERLSIGQPATFTPRDGGPELHGIVVGLNGLAAVESNTAIQQSALSREPYHV 450 Query: 447 TVSMPALDTTGKDCAVGRTGRVVF 470 ++ P L + DC VGR+G V F Sbjct: 451 SLKFPELSKSF-DCRVGRSGLVKF 473 >ref|YP_003754639.1| hypothetical protein Hden_0497 [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ22318.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 215/368 (58%), Gaps = 1/368 (0%) Query: 104 GWLPLRAVLQTSSVEAVVNARIVTLRSPIDGTVSAKPQKSTQLSVVREGDAILHVVNARG 163 GW P +L T+S EA+VNAR++TLR+PI+G V+ + S + IL + N R Sbjct: 104 GWAPAVRLLATTSAEAIVNARVITLRAPIEGDVTMAAAATDIGSTFHNNEEILTIRNRRA 163 Query: 164 DRARLDDLRRQMSRLENERPSLAAKLAAAETAQQDLARQAGQFRDGRILQLEARIAEIQT 223 D + LD LRR+ +L +L AK E +L+ Q FR GRI QL+ RI EI Sbjct: 164 DYSHLDSLRRERDQLGTAISALEAKKQLLEQNLVELSEQQENFRVGRITQLDQRIREIDA 223 Query: 224 AIEAAAARREEAVAAVERASSLIKSGSVSTVEMARLTREQAISQQTEIGARRRLDAAKVE 283 + A A+ + A+ + RAS+L K+ +VS + + +++ +++ T R + VE Sbjct: 224 DLAATEAQHDMALQTLTRASALRKTDAVSQAYLDKALQDERVTKNTIQSLTERRKGSMVE 283 Query: 284 LTAVRNGTYLGDSYNDRPSSVQREEEMRQRVSDLRADLAHADAEIGWLTHEIAAEQLHYV 343 L A R ++GDSYND P S QR+ E+ ++D+RA L + AE+ L I AE Sbjct: 284 LEAARKFIFIGDSYNDTPQSAQRKMEVALELADVRARLEGSKAELAVLMTRIDAETRRNE 343 Query: 344 NRAEADIKAPVGGRIWEMMTSPGEDVRAGQPLLKLLDCSGAVVTANVTESVYNGLKLGEQ 403 + A I++ V GR+WE++T+PGE V AGQ L++LLDC A+VTA+V+E+ Y L++G+ Sbjct: 344 ELSSASIRSTVNGRVWEILTAPGEHVNAGQDLMRLLDCGSAMVTASVSETTYQKLRIGQN 403 Query: 404 ASFEPNDGSAALQGEIVNLTGASGAPANLAINPDALNKEPYRVTVSMPALDTTGKDCAVG 463 A+F+P G L G IV L G + +N AI L +EPY VT+S P L + G +C +G Sbjct: 404 ATFQPRGGGKELNGRIVGLNGLAAVSSNSAIQQSMLAREPYHVTLSFPGL-SEGAECQIG 462 Query: 464 RTGRVVFN 471 R+G V F+ Sbjct: 463 RSGLVKFD 470 >ref|NP_768349.1| hypothetical protein blr1709 [Bradyrhizobium japonicum USDA 110] dbj|BAC46974.1| blr1709 [Bradyrhizobium japonicum USDA 110] Length = 192 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 157/171 (91%), Positives = 164/171 (95%), Gaps = 1/171 (0%) Query: 100 VAVFGWLPLRAVLQTSSVEAVVNARIVTLRSPIDGTVSAKP-QKSTQLSVVREGDAILHV 158 +AVFGWLPL+AVLQTSSV AVVNARIVTLRSPIDGTVSAKP Q STQLSVV EGDAILHV Sbjct: 1 MAVFGWLPLKAVLQTSSVAAVVNARIVTLRSPIDGTVSAKPPQGSTQLSVVHEGDAILHV 60 Query: 159 VNARGDRARLDDLRRQMSRLENERPSLAAKLAAAETAQQDLARQAGQFRDGRILQLEARI 218 VNARGDR RLDDLRRQMSR+ENERPS AAKLAAAETAQQDLARQA QFRDGRILQL+ARI Sbjct: 61 VNARGDRVRLDDLRRQMSRMENERPSFAAKLAAAETAQQDLARQAAQFRDGRILQLQARI 120 Query: 219 AEIQTAIEAAAARREEAVAAVERASSLIKSGSVSTVEMARLTREQAISQQT 269 AEIQ+AIEAAAARRE+AVAAVERASSLIKSGSVSTVEMARLTREQAI+QQT Sbjct: 121 AEIQSAIEAAAARREKAVAAVERASSLIKSGSVSTVEMARLTREQAIAQQT 171 >ref|ZP_01547007.1| hypothetical protein SIAM614_04160 [Stappia aggregata IAM 12614] gb|EAV44324.1| hypothetical protein SIAM614_04160 [Stappia aggregata IAM 12614] Length = 397 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 11/392 (2%) Query: 85 RIVRRLLKVGIGLAIVAVFGWLPLRAVLQTSSVEAVVNARIVTLRSPIDGTVSAKPQKST 144 RI+R LL GL I+ G++ L +S +AV+NAR+ T+R+P G ++ + + Sbjct: 2 RILRLLLA---GLVIITA-GFVIAGEHLSGTSADAVINARLTTVRAPTAGRLTLEHRLLG 57 Query: 145 QLSVVREGDAILHVVNARGDRARLDDLRRQMSRLENERPSLAAKLAAAETAQQDLARQAG 204 S V EG+ + + + D L +L RQ + + E L +AA E + DL ++ Sbjct: 58 --SSVTEGEQLGSINDPLVDNIHLYELIRQKAFAKAEVERLTNMIAAIEQSVSDLKAKSE 115 Query: 205 QFRDGRILQLEARIAEIQTAIEAAAARREEAVAAVERASSLIKSGSVSTVEMARLTREQA 264 +++ RILQLEA + + I AA AR +EA AA +R+ L G + R+ Q Sbjct: 116 RYQRQRILQLEAELRALTFEIGAAEARGDEAEAAFKRSKQLTDRGLEPSASFERIRATQR 175 Query: 265 ISQQTEIGARRRLDAAKVELTAVRNGTYLGDSYNDRPSSVQREEEMRQRVSDLRADLAHA 324 ++ Q GAR+R ++EL A RNGT+LGD YND P S QR E+ S+ +A L Sbjct: 176 VAAQDLEGARQRAAVVEIELQAARNGTFLGDGYNDAPYSEQRISELTLDQSEKQALLTAE 235 Query: 325 DAEIGWLTHEIAAEQLHYVNRAEADIKAPVGGRIWEMMTSPGEDVRAGQPLLKLLDCSGA 384 A+ L + I E+L + + + V G IWE++ + GE V G+PL++L++CS A Sbjct: 236 KAKAEALDNRINVERLRVNRMTSSKLISNVNGTIWEVLAANGETVERGEPLMRLVNCSSA 295 Query: 385 VVTANVTESVYNGLKLGEQASFEPNDGSAALQGEIVNLTGASGAPA---NLAINPDALNK 441 +VT +V ESVYN LK+G+ A F ++ L G I L G SGA NLA+ P + Sbjct: 296 IVTLSVAESVYNRLKIGDLAKFRVSNDQKVLDGTITRLAG-SGAETIYRNLAVAPSERHL 354 Query: 442 EPYRVTVSMPAL-DTTGKDCAVGRTGRVVFNA 472 + + VT+ +P + + CA+GRTGRV F A Sbjct: 355 QRFDVTLLVPTIREDPALACAIGRTGRVFFEA 386