BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0028.p (608 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02882926.1| multi-sensor signal transduction histidine ki... 365 9e-99 ref|YP_558140.1| multi-sensor Signal transduction histidine kina... 363 7e-98 ref|YP_004612918.1| PAS/PAC sensor signal transduction histidine... 351 3e-94 ref|YP_589922.1| PAS/PAC sensor signal transduction histidine ki... 351 3e-94 ref|YP_003696002.1| multi-sensor signal transduction histidine k... 349 1e-93 >ref|ZP_02882926.1| multi-sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] gb|EDT11210.1| multi-sensor signal transduction histidine kinase [Burkholderia graminis C4D1M] Length = 723 Score = 365 bits (938), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 215/497 (43%), Positives = 296/497 (59%), Gaps = 13/497 (2%) Query: 113 LRNSEAQWKEVFEHNPVMYFMVDATGLVLSVNTFGAAQLGYTVDELLGQSVLRVFAAEDR 172 LR + + + + P M + + G ++ +N +LG T E G + +D Sbjct: 228 LRRQKDELRATIDAIPGMVWSSSSDGRLVFINRRWN-ELGVTCVENDGDIWRSIVHPDDY 286 Query: 173 DMVQRNVAACLDNIGQTHNWE-IRKVR-KDGSRLWVRENAKAVRRLDDRLIVLIACE-DI 229 +QR A + I +E + ++R DG W+ A+ +R +++ DI Sbjct: 287 GAMQR---AWREAIATGAPFESVSRIRHSDGVYRWMHIGAEPLRDSAGKILRWYGVNTDI 343 Query: 230 TERKHAENALQQSEMYLTEAQRLSHTGSFGWHVASGEIIWSEETFRIFEFDRAPSITHAT 289 ERK AE AL +SE +L++AQRLS TGS + GE+ WS+ET+RIF++ + + + Sbjct: 344 EERKQAEQALARSEAFLSDAQRLSRTGSIATKLPGGEMWWSDETYRIFDYSKDVAPSFQL 403 Query: 290 VLQRVHPDDRARVQRTIDRASLDGK---DFEHGYRLLMPNGAIKFVHARAHAVTNLSGGT 346 +L R HP+D A + R + SL G D EH RL MP+G++K VH A S Sbjct: 404 ILARAHPEDIA-LMRQAYQQSLAGVPLIDLEH--RLAMPDGSVKHVHYVARLAAPQSANP 460 Query: 347 DFIGAVTDVTARKRAEAELHEAQTNLAHVTRVTALGELAASIAHEVNQPLAAVVTNAAAC 406 +++GA+ DVT R+ A+ L + LAHVTRVT LGELAASIAHEV QPLAA+ T A Sbjct: 461 EYVGALMDVTERRAAQEALDRSTAELAHVTRVTMLGELAASIAHEVTQPLAAIATCGDAA 520 Query: 407 LRWLNRAAPDLNEARGAVRSIISDGNRAGEVIQRVRAMVNKTTDQKASLDINEVINQVIG 466 LRWLNR PDL E ++ +I D RA +VI+++R+M K A LD+N ++ + I Sbjct: 521 LRWLNRPQPDLKEVGQSINQMIHDARRASDVIRQIRSMAQKRDPSHAVLDLNAIVRESIE 580 Query: 467 LVQHELQSHLVSLQLDLAPALPSVVADRIQLQQVILNLVLNGIEAMQPVTDRPRELVIRT 526 LV+ EL +H V + D A PSV ADR+QLQQV++NLV+NG++AM +T RPREL IRT Sbjct: 581 LVRRELDAHRVEVDADYASPAPSVCADRVQLQQVVINLVMNGVQAMSGITARPRELRIRT 640 Query: 527 RHDEAGQIVVTVTDCGVGIATENAERLFDAFYTTKASGMGMGLSICRSIVEAHRGRLSVA 586 R +A +V V D G GI+ ENA RLF+AF+TTKA GMGMGLSICRSIVEAH GR+ Sbjct: 641 RSFDARHALVVVEDSGTGISEENAGRLFNAFFTTKAEGMGMGLSICRSIVEAHGGRIWAE 700 Query: 587 ANIGPGTTFQFTLPLRE 603 + G G QF LPL E Sbjct: 701 SQEGKGAVMQFVLPLDE 717 >ref|YP_558140.1| multi-sensor Signal transduction histidine kinase [Burkholderia xenovorans LB400] gb|ABE30088.1| multi-sensor signal transduction histidine kinase [Burkholderia xenovorans LB400] Length = 640 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/478 (40%), Positives = 296/478 (61%), Gaps = 19/478 (3%) Query: 132 FMVDATGLVLSVNTFGAAQLGYTVDELLGQ---SVLRVFAAEDRDMVQRNVAACLDNIGQ 188 F+ D ++ N G++ DE +G+ S+L+ ++ VQR +A + Sbjct: 164 FVRDPQDVITYWNHAAEVLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLA-------R 216 Query: 189 THNWE--IRKVRKDGSRLWVRENAKAVRRLDDRLIVLIACE---DITERKHAENALQQSE 243 WE + ++DGS + V R D R + E DIT+R+ AE +++S+ Sbjct: 217 DGYWEGDLVHTKRDGSAVIVASRWTLQR--DSRGVPCATLETNNDITQRRRAEELIRKSQ 274 Query: 244 -MYLTEAQRLSHTGSFGWHVASGEIIWSEETFRIFEFDRAPSITHATVLQRVHPDDRARV 302 YL EAQ+LS TGSFGW+VA+GE+ WSEE FRIFE+D + T +V +R+HP+D Sbjct: 275 AQYLAEAQQLSRTGSFGWNVATGELFWSEEAFRIFEYDLTRAPTLESVRERLHPEDVHIF 334 Query: 303 QRTIDRASLDGKDFEHGYRLLMPNGAIKFVHARAHAVTNLSGGTDFIGAVTDVTARKRAE 362 +R + + S DF+ +RLL P+G +K +H AHA G FIGAV DVT + E Sbjct: 335 ERMLLQVSGTADDFDIEHRLLFPDGRVKHLHVVAHASEATGGSRQFIGAVMDVTNARETE 394 Query: 363 AELHEAQTNLAHVTRVTALGELAASIAHEVNQPLAAVVTNAAACLRWLNRAAPDLNEARG 422 +L + Q+ LA +R++ALGEL+ASIAHEV QPLAA++T+ ACLRWL+R P++ E G Sbjct: 395 MQLWQTQSELARASRISALGELSASIAHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEG 454 Query: 423 AVRSIISDGNRAGEVIQRVRAMVNKTTDQKASLDINEVINQVIGLVQHELQSHLVSLQLD 482 V + S+G RA ++QRVR ++ + A +++N+++++V+ L + E++SH L L Sbjct: 455 CVTEMTSEGTRAAGIVQRVRRLMKGAPPEHAPVEVNDLVDEVVALTKGEMESHACCLTLQ 514 Query: 483 LAPALPSVVADRIQLQQVILNLVLNGIEAMQPVTDRPRELVIRTRHDEAGQIVVTVTDCG 542 LA +P V+ DR+QLQQV++N+++NG+++M V + R L + + D G +++ V D G Sbjct: 515 LAREMPVVLGDRVQLQQVLINIIINGLQSMAAVPGKHR-LTVSSSTDGDGNVILAVRDSG 573 Query: 543 VGIATENAERLFDAFYTTKASGMGMGLSICRSIVEAHRGRLSVAANIGPGTTFQFTLP 600 GI+T N RLFDAF+TT+++GMGMGL+IC SIVEAH G++ + N G G TF LP Sbjct: 574 PGISTANLPRLFDAFFTTRSTGMGMGLAICNSIVEAHGGQILASNNTGGGATFSVILP 631 >ref|YP_004612918.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gb|AEH88824.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1186 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 200/504 (39%), Positives = 291/504 (57%), Gaps = 10/504 (1%) Query: 107 ERAMEALRNSEAQWKEVFEHNPVMYFMVDATGLVLSVNTFGAAQLGYTVDELLGQSVLRV 166 +RA +AL SE Q + + P + + D G S+N LG T++E + Sbjct: 667 KRAEQALVESERQSRLIVNTIPGLVAIFDEDGEPESLNEQFLEYLGQTLEEFAHWATNGT 726 Query: 167 FAAEDRDMVQRNVAACLDNIGQTH--NWEIRKVRKDGSRLWVRENAKAVRRLDD---RLI 221 +D + R++ A ++G ++E R R DG+ W + + +R + R Sbjct: 727 VHPDD---LSRHIDALTQSLGTGRGIDFETRLRRFDGTYRWFQLRGQPLRASNGCIVRWY 783 Query: 222 VLIACEDITERKHAENALQQSEMYLTEAQRLSHTGSFGWHVASGEIIWSEETFRIFEFDR 281 VL+ DI +RK AE L++SE +L E Q L+ GSF W V+ E++WSE+ +RIF+ Sbjct: 784 VLMT--DIDDRKRAEEELRRSEAFLAEGQNLARMGSFSWDVSKAEMVWSEQLYRIFDLQP 841 Query: 282 APSITHATVLQRVHPDDRARVQRTIDRASLDGKDFEHGYRLLMPNGAIKFVHARAHAVTN 341 +T + R HP+D + ++RA D E+ +R++ + +IK +H AH V N Sbjct: 842 GLHVTFQLIASRFHPEDMPMLGDMVERAERGENDLEYRHRIITSDRSIKHLHLIAHGVRN 901 Query: 342 LSGGTDFIGAVTDVTARKRAEAELHEAQTNLAHVTRVTALGELAASIAHEVNQPLAAVVT 401 G ++IGAV D+T R+ +E L + +T L R+ +LG L ASIAHEVNQPLA ++T Sbjct: 902 SIGAMEYIGAVLDITQRRLSEEALEKVRTELGLAMRIMSLGALTASIAHEVNQPLAGIIT 961 Query: 402 NAAACLRWLNRAAPDLNEARGAVRSIISDGNRAGEVIQRVRAMVNKTTDQKASLDINEVI 461 NA CLR L P++N AR R I DGNRA +VI R+RA+ +K +D+NE I Sbjct: 962 NAGTCLRMLADDPPNINGARETARRTIRDGNRAADVITRLRALFSKRAAVMEPVDLNEAI 1021 Query: 462 NQVIGLVQHELQSHLVSLQLDLAPALPSVVADRIQLQQVILNLVLNGIEAMQPVTDRPRE 521 +VI L ELQ + +SL LA LP DR+QLQQVI+NL+ N I+A+ V+DRPR Sbjct: 1022 REVIALSLGELQRNSISLITKLATGLPMAAGDRVQLQQVIMNLLRNAIDAVMTVSDRPRR 1081 Query: 522 LVIRTRHDEAGQIVVTVTDCGVGIATENAERLFDAFYTTKASGMGMGLSICRSIVEAHRG 581 +VI T E G I ++V D G+G ++ E++F+AFYTTKA GMG+GLS+ RSI+E HRG Sbjct: 1082 VVIATELGEDGNIRLSVEDAGIGFGAQDMEQIFEAFYTTKADGMGIGLSVSRSIIENHRG 1141 Query: 582 RLSVAANIGPGTTFQFTLPLREED 605 R+ AN G G T F++P ED Sbjct: 1142 RIWAEANDGSGVTVCFSIPEFLED 1165 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 14/318 (4%) Query: 65 PAHLVALALLVASLTAALLMIRLVARSQRRMEAMLRGRASGEERAMEALRNSEAQWKEVF 124 P +L L VA+ A + + L S RR A + EE + A+R +E K + Sbjct: 121 PLQTDSLVLNVAANQAGVRLQELKLSSDRRRLAKESYEIAAEEPSEVAVRENEDDAKLIA 180 Query: 125 EHNPVMYFMVDATGLVLSVNTFGAAQLGYTVDELLGQSVLRVFAAEDRDMVQRNVAACLD 184 + P ++ TG + +VN++ A G DEL G D +QR V + Sbjct: 181 DSIPAGIAVLTPTGEIEAVNSYIAGYFGKPKDELKGWGTAETVHPAD---IQRVVESFRY 237 Query: 185 NI--GQTHNWEIRKVRKDGSRLWVRENAKAVRRLDDRLIVLIACE-DITERKHAENALQQ 241 +I G + E R + D W + + + R++ + DI ERK AE AL++ Sbjct: 238 SIKAGMPYEVEARLLGADNKYRWFQIRGLPLEDRNGRIMRWYSLHIDIDERKQAEEALRE 297 Query: 242 SEMYLTEAQRLSHTGSFGWHVASGEIIWSEE---TFRIFEFDRAPSITHATVLQRVHPDD 298 SE+ L + T ++ + G + + + F D+A A +HPDD Sbjct: 298 SEVNLRKIINTIPTSAWS-TLPDGYCDFLNDRWLDYAGFTSDQAVGWAWAAA---IHPDD 353 Query: 299 RARVQRTIDRASLDGKDFEHGYRLLMPNGAIKFVHARAHAVTNLSGG-TDFIGAVTDVTA 357 + + G R+ +G ++ A+ + + +G + G D+ Sbjct: 354 ASGLAEYWQSCLASGTPVSTEARIRRFDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIED 413 Query: 358 RKRAEAELHEAQTNLAHV 375 RKRA+ L +++ NL + Sbjct: 414 RKRADQALRDSEVNLRKI 431 Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust. Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 24/275 (8%) Query: 107 ERAMEALRNSEAQWKEVFEHNPVMYFMVDATGLVLSVNTFGAAQLGYTVDELLGQSVLRV 166 +RA +ALR+SE +++ P + G +N G+T D+ +G + Sbjct: 415 KRADQALRDSEVNLRKIINTIPTSAWSTLPDGYCDFLNDRWLDYAGFTEDQAVGWAWAAA 474 Query: 167 FAAEDRDMVQRNVAACLDNIGQTHNWEIRKVRKDGSRLWVRENAKAVRRLDDRLIVLIAC 226 +D + +CL + G + E R R DG W A +R +I Sbjct: 475 IHPDDASGLAEYWQSCLAS-GTPVSTEARIRRYDGEYRWFLFLANPLRDEAGTIIRWYGT 533 Query: 227 E-DITERKHAENALQQSEMYLTEAQRLSHTGSFGWHVASGEIIWS--EETFRIFEFDRAP 283 DI +RK A+ AL++SE L + T IWS + + F DR Sbjct: 534 NVDIEDRKRADQALRESERNLRQIINTIPTA-----------IWSTRPDGYCDFLHDRWL 582 Query: 284 SITHATVLQ--------RVHPDDRARVQRTIDRASLDGKDFEHGYRLLMPNGAIKFVHAR 335 T ++ Q +HPDD + R + G E R+ +G ++ Sbjct: 583 DFTGLSMEQAEGWGWRVAIHPDDFDELVRFWKASLASGSPGETEARMRRFDGEYRWFLFL 642 Query: 336 AHAVTNLSGG-TDFIGAVTDVTARKRAEAELHEAQ 369 + + +G + G ++ RKRAE L E++ Sbjct: 643 GDTLRDEAGNIVRWYGTNVEIDDRKRAEQALVESE 677 >ref|YP_589922.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gb|ABF39848.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 713 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 198/496 (39%), Positives = 290/496 (58%), Gaps = 5/496 (1%) Query: 107 ERAMEALRNSEAQWKEVFEHNPVMYFMVDATGLVLSVNTFGAAQLGYTVDELLGQSVLRV 166 ++A++ +R SEA+ +V + P + + G ++ G + +E G Sbjct: 213 QKALDEIRKSEAKLHQVIDTIPTLAWCNLPDGPNEFLSKRWHEYTGLSPEESHGWGWQTA 272 Query: 167 FAAEDRDMVQRNVAACLDNIGQTHNWEIRKVRKDGSRLWVRENAKAVRRLDDRLIVLIAC 226 F ED + + ++ G+ E R R DG W + R ++ Sbjct: 273 FHPEDLPALMKKWMELIET-GEPDEIESRLRRYDGVYRWFLIRVEPFRDETGTIVRWYGT 331 Query: 227 E-DITERKHAENALQQSEMYLTEAQRLSHTGSFGWHVASGEIIWSEETFRIFEFDRAPSI 285 DI ERK AE ++SE +L E L+ G+F W V + +I WS++ ++IFEF+ I Sbjct: 332 STDIEERKQAEERSRRSEAFLAEGLNLARVGNFSWLVETDDIKWSDQLYQIFEFEPGQPI 391 Query: 286 THATVLQRVHPDDRARVQRTIDRASLDGKDFEHGYRLLMPNGAIKFVHARAHAVTNLSGG 345 T + RVHPDD + I++A + DFE+ +RLLMP+G++K++ AHA N Sbjct: 392 TFEKIGSRVHPDDVHTLYNMIEKAQRNVSDFEYEHRLLMPDGSVKYLRLVAHAGRNSEHQ 451 Query: 346 TDFIGAVTDVTARKRAEAELHEAQTNLAHVTRVTALGELAASIAHEVNQPLAAVVTNAAA 405 ++IGAV DVT R A+ L A++ LA+V+RVT+LG L ASIAHEVNQPL+ ++TNA+ Sbjct: 452 VEYIGAVQDVTQRHLADDALARARSQLANVSRVTSLGVLTASIAHEVNQPLSGIITNAST 511 Query: 406 CLRWLNRAAPDLNEARGAVRSIISDGNRAGEVIQRVRAMVNKTTDQKASLDINEVINQVI 465 CLR L+ P++ AR I DGNRA +VI R+R + + ++D+N+ +VI Sbjct: 512 CLRMLSAEPPNVEGARETALRTIRDGNRAADVISRLRTLFTRKDRSAEAVDLNDATKEVI 571 Query: 466 GLVQHELQSHLVSLQLDLAPALPSVVADRIQLQQVILNLVLNGIEAMQPVTDRPRELVIR 525 L +EL V L+ +L LP V+ DR+QLQQVI+NL+ N +AM + DRPR+L+IR Sbjct: 572 ALALNELHRGKVVLRPELGDDLPPVIGDRVQLQQVIMNLMRNASDAMSTIHDRPRDLLIR 631 Query: 526 TRHDEAGQIV-VTVTDCGVGIATENAERLFDAFYTTKASGMGMGLSICRSIVEAHRGRLS 584 T D G+ V ++VTD GVG ++A+RLF+AFYTTK GMG+GLSI RSI+EAH+GRL Sbjct: 632 TESD--GEAVRLSVTDSGVGFDAQSADRLFEAFYTTKNDGMGIGLSISRSIIEAHQGRLW 689 Query: 585 VAANIGPGTTFQFTLP 600 N GPG TF F+LP Sbjct: 690 ATPNQGPGATFCFSLP 705 >ref|YP_003696002.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] gb|ADH91383.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 631 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 203/466 (43%), Positives = 282/466 (60%), Gaps = 26/466 (5%) Query: 156 DELLGQSVLRVFAAEDRDMVQRNVAACLDNIG----QTHNWEIRKVRK--DG------SR 203 ++L G S D++Q L I T WE V + DG SR Sbjct: 165 EQLYGWSRAEAAGKVTHDLLQTRFPVPLAQINTLLLDTGRWEGELVHRTRDGTEVPVASR 224 Query: 204 LWVRENAKAVRRLDDRLIVLIACEDITERKHAENALQQSEM-YLTEAQRLSHTGSFGWHV 262 ++ENA+ + +L DITERK A+ L +S+ +L EAQRLSHTGSFGW+V Sbjct: 225 WTLQENARG-----RPVGILENNTDITERKRADELLHRSQAAFLAEAQRLSHTGSFGWNV 279 Query: 263 ASGEIIWSEETFRIFEFDRAPSITHATVLQRVHPDDRARVQRTIDRASLDGKDFEHGYRL 322 +G I WS+ETFRIF ++ A + + ++QR HPDD A V+ T+ A+ + F+ +RL Sbjct: 280 VTGRIHWSDETFRIFGYEPAAAPSIDLLIQRAHPDDAALVRETVYNAADGERGFDFEFRL 339 Query: 323 LMPNGAIKFVHARAHAVTNLSGGTDFIGAVTDVTARKRAEAE-------LHEAQTNLAHV 375 L+P+GA++ VHA AH++ N S ++GAV+D+TA K A AE L QT+LAH Sbjct: 340 LLPDGAVRHVHAVAHSMRNGSPDLHYVGAVSDITAAKEALAERARAQEMLDRVQTDLAHA 399 Query: 376 TRVTALGELAASIAHEVNQPLAAVVTNAAACLRWLNRAAPDLNEARGAVRSIISDGNRAG 435 RV+ LGEL ASIAHEVNQPL A+ ++AAA +RWL R P++ E R SI+SD RAG Sbjct: 400 ARVSVLGELTASIAHEVNQPLTAIASSAAAGVRWLRRPVPNIEEVRELAESIVSDAQRAG 459 Query: 436 EVIQRVRAMVNKTTDQKASLDINEVINQVIGLVQHELQSHLVSLQLDLAPALPSVVADRI 495 E+I R+R+M + + L ++EVI +V+ +++E +S V++ AP P V+ DR Sbjct: 460 EIIARIRSMAARKAPEHTPLVLDEVIGEVLLFLRNEARSRAVTVLQHPAPDAPQVIGDRT 519 Query: 496 QLQQVILNLVLNGIEAMQPVTDRPRELVIRTRHDEAGQIVVTVTDCGVGIATENAERLFD 555 QLQQVI+NL +N ++AM R +VIRT + + V D G GI E+ +RLF+ Sbjct: 520 QLQQVIVNLAINAMQAMAQAGSPERRVVIRTVATDGIGVRCIVEDSGPGIPPEHMDRLFE 579 Query: 556 AFYTTKASGMGMGLSICRSIVEAHRGRLSV-AANIGPGTTFQFTLP 600 +F+TTKASGMGMGL ICRSI+EAH GR+ V A G +F FTLP Sbjct: 580 SFFTTKASGMGMGLPICRSIIEAHGGRIRVDEAGAQGGASFSFTLP 625