BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0027.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768354.1| two component regulator [Bradyrhizobium japonic... 293 1e-77 ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyp... 291 4e-77 ref|YP_003695646.1| LuxR family transcriptional regulator [Stark... 287 8e-76 gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizo... 285 4e-75 ref|NP_771414.1| two-component response regulator [Bradyrhizobiu... 276 1e-72 >ref|NP_768354.1| two component regulator [Bradyrhizobium japonicum USDA 110] sp|P15940.1|NODW_BRAJA RecName: Full=Nodulation protein W gb|AAG60697.1|AF322012_2 NodW [Bradyrhizobium japonicum] gb|AAA26232.1| nodulation protein (nodW; gtg start) [Bradyrhizobium japonicum] dbj|BAC46979.1| two component regulator [Bradyrhizobium japonicum USDA 110] Length = 227 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 168/202 (83%) Query: 13 SSEDPIVFVVDDDASVRDALSNLFRSVGLRTAAFGSAHEFLQRKPPDVPSCLILDIRLPR 72 +S IVFVV+DD S+R +L+NLFRSVGL AFGSA E LQ PDV SCL+LD+RLP Sbjct: 16 ASTKAIVFVVEDDISMRRSLTNLFRSVGLEVVAFGSAREMLQSTMPDVTSCLVLDVRLPG 75 Query: 73 VSGLDFQAELAKVGIHIPIIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDAVTTAI 132 +SGLD+Q ELA++ IHIPIIF+TGHGDIPMTVRAMK GAVDFL+KPFRDQ++LDAV A Sbjct: 76 LSGLDYQTELARLNIHIPIIFITGHGDIPMTVRAMKGGAVDFLSKPFRDQELLDAVVAAT 135 Query: 133 ERDRNRRDEAKVLANLRAAFATLTPRERQIMSLVTAGLMNKQVAAEIGVAEITVKIHRGH 192 ERDR RR+ + +ANL++ F TL+PRE+ +M LV GLMNKQVAAE+G+AEITVKI+RGH Sbjct: 136 ERDRKRREAQRTVANLKSLFETLSPREQAVMKLVATGLMNKQVAAELGLAEITVKIYRGH 195 Query: 193 IMRKMAAKSLPDLVRMAQMLGI 214 +M+KM A+SL DL+RM++ LGI Sbjct: 196 VMKKMRARSLADLIRMSETLGI 217 >ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] emb|CCB64383.1| Transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] Length = 216 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 137/213 (64%), Positives = 176/213 (82%) Query: 6 ASPSGLASSEDPIVFVVDDDASVRDALSNLFRSVGLRTAAFGSAHEFLQRKPPDVPSCLI 65 ++PS S+ V+VVDDD ++RDALS+LFRSVGL+ FGSA EFL++K P++PSCL+ Sbjct: 3 SNPSSDRSTAGRAVYVVDDDPALRDALSSLFRSVGLQVEVFGSAAEFLEKKLPEIPSCLV 62 Query: 66 LDIRLPRVSGLDFQAELAKVGIHIPIIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDML 125 LDIRLP VSGLDFQA+LAK GI +P+IFMTGHGDIPM+VRAMKAGA+DFLTKPFRDQDML Sbjct: 63 LDIRLPGVSGLDFQAQLAKAGIRMPVIFMTGHGDIPMSVRAMKAGAIDFLTKPFRDQDML 122 Query: 126 DAVTTAIERDRNRRDEAKVLANLRAAFATLTPRERQIMSLVTAGLMNKQVAAEIGVAEIT 185 DAV +A+E DR + + + +A+L A + +LT RE+++M+ VT GLMNKQ+A E+G++EIT Sbjct: 123 DAVFSALETDRKQLESDQSIADLSAHYESLTAREKEVMAYVTKGLMNKQIAGEMGLSEIT 182 Query: 186 VKIHRGHIMRKMAAKSLPDLVRMAQMLGIGQAS 218 VKIHRGH+MRKMA +SL DLVR A+ LG+ S Sbjct: 183 VKIHRGHVMRKMAVRSLADLVRAAEKLGLSGVS 215 >ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 218 Score = 287 bits (735), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 168/210 (80%) Query: 8 PSGLASSEDPIVFVVDDDASVRDALSNLFRSVGLRTAAFGSAHEFLQRKPPDVPSCLILD 67 P A DP+V VVDDD ++R+ALS+LFRSVGL+ F SA E L K P+V CL+LD Sbjct: 7 PRPSAPPSDPLVIVVDDDPALREALSSLFRSVGLQVELFASAAELLAAKLPEVARCLVLD 66 Query: 68 IRLPRVSGLDFQAELAKVGIHIPIIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDA 127 IRLP VSGLDFQA+LA+ I +P IFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDA Sbjct: 67 IRLPGVSGLDFQAQLARSEIEMPTIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDA 126 Query: 128 VTTAIERDRNRRDEAKVLANLRAAFATLTPRERQIMSLVTAGLMNKQVAAEIGVAEITVK 187 V +AI DR RR+ K ++ ++ + TLTPRE+Q+M LVT+GLMNKQVAAE+G++EITVK Sbjct: 127 VASAIRLDRERREARKAVSGVQNLYETLTPREKQVMELVTSGLMNKQVAAEVGLSEITVK 186 Query: 188 IHRGHIMRKMAAKSLPDLVRMAQMLGIGQA 217 IHRGH+MRKM A SL +LVRMA+ LG+ A Sbjct: 187 IHRGHVMRKMGAHSLAELVRMAETLGLSSA 216 >gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizobium sp. WM9] Length = 227 Score = 285 bits (728), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 135/207 (65%), Positives = 168/207 (81%) Query: 17 PIVFVVDDDASVRDALSNLFRSVGLRTAAFGSAHEFLQRKPPDVPSCLILDIRLPRVSGL 76 P V VVDDD S+RD+L NLFRS+GL A+GSA E LQ + PDVPSCL+LDIRLP SGL Sbjct: 21 PSVLVVDDDISMRDSLVNLFRSIGLDVVAYGSAQELLQSELPDVPSCLVLDIRLPGSSGL 80 Query: 77 DFQAELAKVGIHIPIIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDAVTTAIERDR 136 + Q+ELAK+ IHIPIIF+T HGDIPMTV+AMK+GA+DFL+KPFRDQ++LD V AIE+DR Sbjct: 81 ELQSELAKLKIHIPIIFITAHGDIPMTVKAMKSGAIDFLSKPFRDQELLDGVVAAIEQDR 140 Query: 137 NRRDEAKVLANLRAAFATLTPRERQIMSLVTAGLMNKQVAAEIGVAEITVKIHRGHIMRK 196 NRR KV+ L++ F L+PRE+ ++ LV AGL+NKQVAAE+G+AEITVKI+RGH+M+K Sbjct: 141 NRRGVDKVVRRLQSLFEALSPREQDVLKLVAAGLLNKQVAAELGLAEITVKIYRGHMMKK 200 Query: 197 MAAKSLPDLVRMAQMLGIGQASGGAQT 223 M A+SL DL+RMA+ LGIG QT Sbjct: 201 MGARSLADLIRMAERLGIGTDRVRVQT 227 >ref|NP_771414.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] emb|CAA80352.1| NwsB [Bradyrhizobium japonicum] dbj|BAC50039.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/212 (68%), Positives = 170/212 (80%) Query: 12 ASSEDPIVFVVDDDASVRDALSNLFRSVGLRTAAFGSAHEFLQRKPPDVPSCLILDIRLP 71 AS+ DPIV +VDDD S+R AL+NLF+SVGL+ AF SA E ++ +PP VPSCL+LDIRLP Sbjct: 10 ASAGDPIVRIVDDDPSMRRALTNLFQSVGLKVEAFSSAAEIMEAQPPAVPSCLVLDIRLP 69 Query: 72 RVSGLDFQAELAKVGIHIPIIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDAVTTA 131 SGLD QA+LAK IH PIIF+TGHGDIPMTVRAMK+GAVDFLTKP RDQDMLDAV A Sbjct: 70 GSSGLDLQADLAKANIHTPIIFITGHGDIPMTVRAMKSGAVDFLTKPVRDQDMLDAVQAA 129 Query: 132 IERDRNRRDEAKVLANLRAAFATLTPRERQIMSLVTAGLMNKQVAAEIGVAEITVKIHRG 191 IERDR RRD K ++ +R+ F LT RER +++LV +GLMNKQVAAE+G+AEITVKI+RG Sbjct: 130 IERDRRRRDAEKSISGVRSRFEGLTARERDVLALVASGLMNKQVAAELGLAEITVKIYRG 189 Query: 192 HIMRKMAAKSLPDLVRMAQMLGIGQASGGAQT 223 IMRKM AKSL DLVRM LGI + G QT Sbjct: 190 QIMRKMGAKSLADLVRMTDALGIPRNRGHLQT 221