BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0026.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004675078.1| Response regulator receiver protein [Hyphomi...   146   1e-33
ref|YP_003695647.1| response regulator receiver protein [Starkey...   143   9e-33
gb|AAG60696.1|AF322012_1 ID1 [Bradyrhizobium japonicum]               137   4e-31
ref|NP_768353.2| two-component response regulator [Bradyrhizobiu...   137   5e-31
ref|NP_771415.1| two-component response regulator [Bradyrhizobiu...   134   4e-30

>ref|YP_004675078.1| Response regulator receiver protein [Hyphomicrobium sp. MC1]
 emb|CCB64504.1| Response regulator receiver protein [Hyphomicrobium sp. MC1]
          Length = 129

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 88/122 (72%)

Query: 1   LSNTPVISIIDDDLSVRTATDNLVRSLGYAVETFASAEEFLHSPRLNDTSCVIADVRMPA 60
           +S  P+ISIIDDD +VR AT++LVRSLG+   TFASAEEFL+S RL + SCVI DV MP 
Sbjct: 1   MSQNPLISIIDDDEAVRVATESLVRSLGFGATTFASAEEFLNSARLQEISCVITDVNMPG 60

Query: 61  MSGLDLQSHLIASGRRFPFIFVTAFSVESDRVRALKAGAICFLIKPCDGDVLIKCLDAAL 120
           M+G++LQS+L A G   P IF+TAF  E  R R   AGAI FL KP DG  +I+C+D AL
Sbjct: 61  MTGVELQSYLQAQGHNVPMIFITAFPEERTRQRVNAAGAIGFLSKPFDGGAMIQCIDKAL 120

Query: 121 AQ 122
            +
Sbjct: 121 GR 122


>ref|YP_003695647.1| response regulator receiver protein [Starkeya novella DSM 506]
 gb|ADH91028.1| response regulator receiver protein [Starkeya novella DSM 506]
          Length = 128

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 95/126 (75%)

Query: 1   LSNTPVISIIDDDLSVRTATDNLVRSLGYAVETFASAEEFLHSPRLNDTSCVIADVRMPA 60
           +S+ P+I+IIDDD SVR AT++LVRSLG++  TFASAE+FL+SP L +T+CVI DV+MP 
Sbjct: 1   MSSPPMITIIDDDESVRIATESLVRSLGFSARTFASAEDFLNSPLLGETACVITDVQMPG 60

Query: 61  MSGLDLQSHLIASGRRFPFIFVTAFSVESDRVRALKAGAICFLIKPCDGDVLIKCLDAAL 120
           MSG++LQSHL ++G   P IF+TAF  E  R +   AGA+ FL KP DG  +I+C+D AL
Sbjct: 61  MSGVELQSHLRSNGDATPLIFITAFPEERIRRQVDAAGAVGFLAKPFDGHDMIECIDRAL 120

Query: 121 AQHRTA 126
            +  TA
Sbjct: 121 GERDTA 126


>gb|AAG60696.1|AF322012_1 ID1 [Bradyrhizobium japonicum]
          Length = 128

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 87/121 (71%)

Query: 3   NTPVISIIDDDLSVRTATDNLVRSLGYAVETFASAEEFLHSPRLNDTSCVIADVRMPAMS 62
           +TP+IS++DDD SVR AT+NL++S GY V+ FASAE  L SPRLN+ SCVI DV+M AMS
Sbjct: 2   STPLISVVDDDPSVRAATENLLKSRGYVVQIFASAEALLRSPRLNEISCVITDVQMAAMS 61

Query: 63  GLDLQSHLIASGRRFPFIFVTAFSVESDRVRALKAGAICFLIKPCDGDVLIKCLDAALAQ 122
           GL+L + +   G + PFIF+TAF  E  R  AL AGAI FL KP     L+KCLD+AL  
Sbjct: 62  GLELLAEMRTRGYQAPFIFITAFPNERVRASALDAGAIGFLAKPFGVQELLKCLDSALQA 121

Query: 123 H 123
           +
Sbjct: 122 Y 122


>ref|NP_768353.2| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 129

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 87/121 (71%)

Query: 3   NTPVISIIDDDLSVRTATDNLVRSLGYAVETFASAEEFLHSPRLNDTSCVIADVRMPAMS 62
           +TP+IS++DDD SVR AT+NL++S GY V+ FASAE  L SPRLN+ SCVI DV+M AMS
Sbjct: 3   STPLISVVDDDPSVRAATENLLKSRGYVVQIFASAEALLRSPRLNEISCVITDVQMAAMS 62

Query: 63  GLDLQSHLIASGRRFPFIFVTAFSVESDRVRALKAGAICFLIKPCDGDVLIKCLDAALAQ 122
           GL+L + +   G + PFIF+TAF  E  R  AL AGAI FL KP     L+KCLD+AL  
Sbjct: 63  GLELLAEMRTRGYQAPFIFITAFPNERVRASALDAGAIGFLAKPFGVQELLKCLDSALQA 122

Query: 123 H 123
           +
Sbjct: 123 Y 123


>ref|NP_771415.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 emb|CAA80353.1| ORF126 [Bradyrhizobium japonicum]
 dbj|BAC50040.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 126

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 86/115 (74%)

Query: 6   VISIIDDDLSVRTATDNLVRSLGYAVETFASAEEFLHSPRLNDTSCVIADVRMPAMSGLD 65
           +IS+IDDD SVR AT+NL+ S GY V TF SA EFL S  L+ TSCVIADV+M AMSG++
Sbjct: 4   IISVIDDDPSVRLATNNLLTSRGYTVYTFGSAHEFLQSAELDTTSCVIADVQMLAMSGVE 63

Query: 66  LQSHLIASGRRFPFIFVTAFSVESDRVRALKAGAICFLIKPCDGDVLIKCLDAAL 120
           L +H+ + GR  PFIF+TAF  E+ R RALKAGA CFL KP     L++CL+AAL
Sbjct: 64  LLTHMRSLGRITPFIFMTAFPDEAVRDRALKAGATCFLAKPFSTPKLLQCLEAAL 118