BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0021.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202709.1| putative branched-chain amino acid ABC trans... 579 e-163 ref|YP_001243402.1| putative branched-chain amino acid ABC trans... 578 e-163 ref|NP_767553.1| hypothetical protein bll0913 [Bradyrhizobium ja... 565 e-159 ref|YP_004107032.1| extracellular ligand-binding receptor [Rhodo... 540 e-152 ref|YP_483661.1| extracellular ligand-binding receptor [Rhodopse... 538 e-151 >ref|YP_001202709.1| putative branched-chain amino acid ABC transporter periplasmic binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74466.1| putative branched-chain amino acid ABC transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] Length = 416 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/313 (86%), Positives = 295/313 (94%) Query: 1 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNARKVPQLLASTGASRFSDPQNAPWTIAFNP 60 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNA+KVPQLLASTGASRF+DPQN PWTIA+NP Sbjct: 104 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNAKKVPQLLASTGASRFTDPQNFPWTIAYNP 163 Query: 61 NYQSEGRIYAKYILANHPNAKIGIFYQNDDLGRDYITGLKSGLGDKAASMIVTEVSYELT 120 NYQSEGRIYAKYILANHPNAKIGI YQNDDLGRDYI GL+SGLG KA SMIV+E SYEL+ Sbjct: 164 NYQSEGRIYAKYILANHPNAKIGILYQNDDLGRDYIAGLRSGLGAKADSMIVSEASYELS 223 Query: 121 DPTVDSQIVKLKAAGVDLVYDASTPKFAAQAIRKIADLNWNPVHILDINASPVSATLKPA 180 DPTVDSQIVKLK++G DL+Y+ASTPKFAAQAI+K+ADL W PVHILDINASPVSATLKPA Sbjct: 224 DPTVDSQIVKLKSSGADLLYNASTPKFAAQAIKKLADLGWKPVHILDINASPVSATLKPA 283 Query: 181 GLDISKGIISTNYGKDPADPQWKDDPGVRAYFAFMDKYYPEGDKLNTVNTYGYSTAELLI 240 GLDISK IISTNYGKDPADPQWKDDPGV+AYF FMDKYYPEGDKLNTVNTYGYSTAELL+ Sbjct: 284 GLDISKDIISTNYGKDPADPQWKDDPGVKAYFEFMDKYYPEGDKLNTVNTYGYSTAELLV 343 Query: 241 QVLKQCGDDLTRENLMKQVTSLKKFVPSLALPGMSITTGPNDYRINKQMQMMKFNGERWE 300 Q+L+QCGDDLTREN+M+Q ++K FVPSLALPG+SI T P D+RINKQMQMM+FNGERWE Sbjct: 344 QILRQCGDDLTRENVMRQAANIKGFVPSLALPGLSINTSPTDFRINKQMQMMRFNGERWE 403 Query: 301 LFGPIIEDTGPAG 313 LFGPIIEDTG AG Sbjct: 404 LFGPIIEDTGAAG 416 >ref|YP_001243402.1| putative branched-chain amino acid ABC transporter periplasmic binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ39496.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 415 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 271/313 (86%), Positives = 293/313 (93%) Query: 1 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNARKVPQLLASTGASRFSDPQNAPWTIAFNP 60 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLN +KVPQLLASTGASRF+DPQN PWTIA+NP Sbjct: 103 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNGKKVPQLLASTGASRFTDPQNFPWTIAYNP 162 Query: 61 NYQSEGRIYAKYILANHPNAKIGIFYQNDDLGRDYITGLKSGLGDKAASMIVTEVSYELT 120 NYQSEGRIYAKYILANHPNAKIGI YQNDDLGRDYI GL+SGLG KA SMIV E SYEL+ Sbjct: 163 NYQSEGRIYAKYILANHPNAKIGILYQNDDLGRDYIAGLRSGLGAKADSMIVAEASYELS 222 Query: 121 DPTVDSQIVKLKAAGVDLVYDASTPKFAAQAIRKIADLNWNPVHILDINASPVSATLKPA 180 DPTVDSQIVKLK++G DL+Y+ASTPKFAAQAI+K+ADL W PVHILDINASPVSATLKPA Sbjct: 223 DPTVDSQIVKLKSSGADLLYNASTPKFAAQAIKKLADLGWKPVHILDINASPVSATLKPA 282 Query: 181 GLDISKGIISTNYGKDPADPQWKDDPGVRAYFAFMDKYYPEGDKLNTVNTYGYSTAELLI 240 GLDISK IISTNYGKDPADPQWKDDPGV+AYF FMDKYYPEGDKLNTVNTYGYSTAELL+ Sbjct: 283 GLDISKDIISTNYGKDPADPQWKDDPGVKAYFEFMDKYYPEGDKLNTVNTYGYSTAELLV 342 Query: 241 QVLKQCGDDLTRENLMKQVTSLKKFVPSLALPGMSITTGPNDYRINKQMQMMKFNGERWE 300 Q+L+QCGDDLTREN+M+Q ++K FVPSLALPG+SI T P D+RINKQMQMM+FNGERWE Sbjct: 343 QILRQCGDDLTRENVMRQAANIKGFVPSLALPGLSINTSPTDFRINKQMQMMRFNGERWE 402 Query: 301 LFGPIIEDTGPAG 313 LFGPIIEDTG AG Sbjct: 403 LFGPIIEDTGAAG 415 >ref|NP_767553.1| hypothetical protein bll0913 [Bradyrhizobium japonicum USDA 110] dbj|BAC46178.1| bll0913 [Bradyrhizobium japonicum USDA 110] Length = 408 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 262/313 (83%), Positives = 290/313 (92%) Query: 1 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNARKVPQLLASTGASRFSDPQNAPWTIAFNP 60 VRKLVEGDEVLFTFQ+IGT +NAAVQKYLN +KVPQLLASTGA+RF+DPQN PWTIA+NP Sbjct: 96 VRKLVEGDEVLFTFQLIGTAANAAVQKYLNGKKVPQLLASTGAARFNDPQNYPWTIAYNP 155 Query: 61 NYQSEGRIYAKYILANHPNAKIGIFYQNDDLGRDYITGLKSGLGDKAASMIVTEVSYELT 120 NY SEGRIYAKYIL HPNAKIG+ YQNDD+GRDY+ GLKSGLGDKAASMIV EVSYE+T Sbjct: 156 NYVSEGRIYAKYILKEHPNAKIGVLYQNDDMGRDYLAGLKSGLGDKAASMIVGEVSYEVT 215 Query: 121 DPTVDSQIVKLKAAGVDLVYDASTPKFAAQAIRKIADLNWNPVHILDINASPVSATLKPA 180 DPTVDSQ+VKLK+ GVDL YDASTPKFAAQAI+K+ADL W PVHILDINASP+SATLKPA Sbjct: 216 DPTVDSQVVKLKSMGVDLFYDASTPKFAAQAIKKLADLGWTPVHILDINASPISATLKPA 275 Query: 181 GLDISKGIISTNYGKDPADPQWKDDPGVRAYFAFMDKYYPEGDKLNTVNTYGYSTAELLI 240 GL+ISKGIIST YGK+P+DPQWKDDPGV+A+FAFMDKY+PEGDKLNTVNTY YS AELL+ Sbjct: 276 GLEISKGIISTQYGKEPSDPQWKDDPGVKAFFAFMDKYFPEGDKLNTVNTYAYSVAELLV 335 Query: 241 QVLKQCGDDLTRENLMKQVTSLKKFVPSLALPGMSITTGPNDYRINKQMQMMKFNGERWE 300 QVLKQCGDDLTREN+MKQV ++K F PS ALPG+ I TGPNDYR+NKQMQMMKFNGERWE Sbjct: 336 QVLKQCGDDLTRENVMKQVANIKDFTPSFALPGIKINTGPNDYRVNKQMQMMKFNGERWE 395 Query: 301 LFGPIIEDTGPAG 313 LFGPIIED GP+G Sbjct: 396 LFGPIIEDNGPSG 408 >ref|YP_004107032.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU42299.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 406 Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust. Identities = 248/308 (80%), Positives = 282/308 (91%) Query: 1 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNARKVPQLLASTGASRFSDPQNAPWTIAFNP 60 VRKLVE DEVL TFQIIGTPSNAAVQKYLNA+KVPQLLA+TGA+RF+DP+N PWT+ +NP Sbjct: 95 VRKLVESDEVLLTFQIIGTPSNAAVQKYLNAKKVPQLLAATGATRFTDPKNFPWTMGYNP 154 Query: 61 NYQSEGRIYAKYILANHPNAKIGIFYQNDDLGRDYITGLKSGLGDKAASMIVTEVSYELT 120 NYQ+EGRIYA+YIL NHP+AKIGI +QNDDLGRDY+TGL++GLGDKA MIV E SYELT Sbjct: 155 NYQTEGRIYARYILQNHPDAKIGILFQNDDLGRDYVTGLRAGLGDKADKMIVAEASYELT 214 Query: 121 DPTVDSQIVKLKAAGVDLVYDASTPKFAAQAIRKIADLNWNPVHILDINASPVSATLKPA 180 DPTVDSQIVKLK+AG L+Y+ASTP+FAAQAI+K+ADL WNPVHILDINASPVSATLKPA Sbjct: 215 DPTVDSQIVKLKSAGATLLYNASTPRFAAQAIKKVADLGWNPVHILDINASPVSATLKPA 274 Query: 181 GLDISKGIISTNYGKDPADPQWKDDPGVRAYFAFMDKYYPEGDKLNTVNTYGYSTAELLI 240 GLDISKGIIS NYGKDPADPQW DDPGV+ YFAFMDKYYPEGDK+NTVN+YGYSTAELL+ Sbjct: 275 GLDISKGIISVNYGKDPADPQWADDPGVKKYFAFMDKYYPEGDKMNTVNSYGYSTAELLV 334 Query: 241 QVLKQCGDDLTRENLMKQVTSLKKFVPSLALPGMSITTGPNDYRINKQMQMMKFNGERWE 300 +LKQCGD+LTR+N+MKQ SLK V L+LPGMS+ T P D+R+NKQ++MMKFNGERWE Sbjct: 335 TILKQCGDNLTRDNVMKQAASLKNVVGDLSLPGMSVNTSPTDFRVNKQLRMMKFNGERWE 394 Query: 301 LFGPIIED 308 LFGPIIED Sbjct: 395 LFGPIIED 402 >ref|YP_483661.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] gb|ABD04750.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] Length = 406 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 247/308 (80%), Positives = 280/308 (90%) Query: 1 VRKLVEGDEVLFTFQIIGTPSNAAVQKYLNARKVPQLLASTGASRFSDPQNAPWTIAFNP 60 VRKLVE DEVL TFQIIGTPSNAAVQKYLN +KVPQLLA+TGA+RF+DP+N PWT+ +NP Sbjct: 95 VRKLVESDEVLLTFQIIGTPSNAAVQKYLNQKKVPQLLAATGATRFTDPKNFPWTMGYNP 154 Query: 61 NYQSEGRIYAKYILANHPNAKIGIFYQNDDLGRDYITGLKSGLGDKAASMIVTEVSYELT 120 NYQ+EGRIYA+YIL NHP+AKIG+ +QNDDLGRDY+TGL++GLGDKA MIV E SYELT Sbjct: 155 NYQTEGRIYARYILKNHPDAKIGVLFQNDDLGRDYVTGLRAGLGDKADKMIVAETSYELT 214 Query: 121 DPTVDSQIVKLKAAGVDLVYDASTPKFAAQAIRKIADLNWNPVHILDINASPVSATLKPA 180 DPTVDSQIVKLK+AG L+YDASTP+FAAQAI+K+ADL WNPVHILDINASPVSATLKPA Sbjct: 215 DPTVDSQIVKLKSAGATLLYDASTPRFAAQAIKKVADLGWNPVHILDINASPVSATLKPA 274 Query: 181 GLDISKGIISTNYGKDPADPQWKDDPGVRAYFAFMDKYYPEGDKLNTVNTYGYSTAELLI 240 GLDISKGIIS NYGKDPADPQW DDPGV+ YFAFMDKYYPEGDK+NTVN+YGYSTAELLI Sbjct: 275 GLDISKGIISVNYGKDPADPQWADDPGVKKYFAFMDKYYPEGDKMNTVNSYGYSTAELLI 334 Query: 241 QVLKQCGDDLTRENLMKQVTSLKKFVPSLALPGMSITTGPNDYRINKQMQMMKFNGERWE 300 +LKQCGD+LTR+N+MKQ +LK L+LPGMSI T P D+R+NKQ++MMKFNGERWE Sbjct: 335 TILKQCGDNLTRDNIMKQAANLKNVTLDLSLPGMSINTSPTDFRVNKQLRMMKFNGERWE 394 Query: 301 LFGPIIED 308 LFGPIIED Sbjct: 395 LFGPIIED 402