BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0015.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767548.1| hypothetical protein blr0908 [Bradyrhizobium ja... 806 0.0 ref|YP_001202701.1| putative intracellular PHB depolymerase [Bra... 803 0.0 ref|YP_575589.1| polyhydroxyalkanoate depolymerase, intracellula... 784 0.0 ref|ZP_01044979.1| polyhydroxyalkanoate depolymerase [Nitrobacte... 781 0.0 ref|YP_567267.1| polyhydroxyalkanoate depolymerase, intracellula... 778 0.0 >ref|NP_767548.1| hypothetical protein blr0908 [Bradyrhizobium japonicum USDA 110] dbj|BAC46173.1| blr0908 [Bradyrhizobium japonicum USDA 110] Length = 442 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/442 (86%), Positives = 407/442 (92%), Gaps = 1/442 (0%) Query: 1 MPIGEFG-APPLAAEGSPALTTPLYWMYEMAHASLNPARAVTDATKILFQNPLNPWTHTE 59 MPIGEFG APPLAAEGSP LTTP+YWMYEMAHASLNPARAVTDATK LFQNPLNPW TE Sbjct: 1 MPIGEFGGAPPLAAEGSPVLTTPMYWMYEMAHASLNPARAVTDATKFLFQNPLNPWARTE 60 Query: 60 FGKSVAAGCELFERTTRRYGKPDWNLPTTEVNGLRTPVEVRSIWEKPFCRLLHFDRKFTR 119 GKSVAA CELFERTTRRYGKP+W L TEVNG+R PVE+RS+WEKPFCRLL+FDRKFTR Sbjct: 61 VGKSVAAACELFERTTRRYGKPEWGLNDTEVNGIRVPVEIRSVWEKPFCRLLYFDRKFTR 120 Query: 120 PLRAPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWADARMVPLAEGRFDLDDYV 179 PLR+PQPRVLIVAPMSGHYATLLRGTVEA LP H+VYITDWADARMVPL++GRFDLDDY+ Sbjct: 121 PLRSPQPRVLIVAPMSGHYATLLRGTVEALLPAHDVYITDWADARMVPLSDGRFDLDDYI 180 Query: 180 DYVIEMLHALGGNMHVIAVCQPSVPVLAAVSVMEANHDPFVPLSMTLMGGPIDTRRNPTA 239 DY+IEMLH LGGN HV+AVCQPSVPV+AAVS+MEA DPFVP SMTLMGGPIDTRRNPTA Sbjct: 181 DYIIEMLHVLGGNTHVMAVCQPSVPVVAAVSIMEAQRDPFVPTSMTLMGGPIDTRRNPTA 240 Query: 240 VNNLAEQRGIEWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKALFAH 299 VNNLA++RGI+WFR+HVITKVPFPHPG+MRDVYPGFLQLNGFISMNLDRHMDAHK LFAH Sbjct: 241 VNNLAQERGIDWFRNHVITKVPFPHPGMMRDVYPGFLQLNGFISMNLDRHMDAHKQLFAH 300 Query: 300 LVKGDGDLADKHREFYDEYLAVMDLTAEYYLQTVDLVFVKHALPKGEMTHRGKPVDPSKI 359 LVKGDGDL DKHREFYDEYLAVMDL+AEYYLQTVD VFVKHALPKGEMTHRG VD SK+ Sbjct: 301 LVKGDGDLVDKHREFYDEYLAVMDLSAEYYLQTVDTVFVKHALPKGEMTHRGTRVDLSKV 360 Query: 360 RRVALMTVEGEKDDISGLGQTEATHALCTAIPNHRRVHYVQKGVGHYGVFNGSRFRSEIV 419 +RVALMTVEGE DDISGLGQTEATH LC +IP+HRRVHYVQKGVGHYGVFNGSRF+SEIV Sbjct: 361 KRVALMTVEGENDDISGLGQTEATHTLCRSIPDHRRVHYVQKGVGHYGVFNGSRFKSEIV 420 Query: 420 PRISDFMVSAANTRLSLVAAAE 441 PRI DFMVSAAN AAE Sbjct: 421 PRIHDFMVSAANPSSLQALAAE 442 >ref|YP_001202701.1| putative intracellular PHB depolymerase [Bradyrhizobium sp. ORS 278] emb|CAL74458.1| putative intracellular PHB depolymerase [Bradyrhizobium sp. ORS 278] Length = 442 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/442 (85%), Positives = 411/442 (92%), Gaps = 1/442 (0%) Query: 1 MPIGEFG-APPLAAEGSPALTTPLYWMYEMAHASLNPARAVTDATKILFQNPLNPWTHTE 59 MPIGEFG APPLA+EGSP LTTP+YWMYEMAHASLNPARAVTDATKILFQNPLNPW HTE Sbjct: 1 MPIGEFGGAPPLASEGSPVLTTPMYWMYEMAHASLNPARAVTDATKILFQNPLNPWAHTE 60 Query: 60 FGKSVAAGCELFERTTRRYGKPDWNLPTTEVNGLRTPVEVRSIWEKPFCRLLHFDRKFTR 119 GKS+AA CELFERTTRRYGKP+W L TEVNG+RT VEVRSIWEKPFCRLL+FDRK TR Sbjct: 61 MGKSIAAACELFERTTRRYGKPEWGLDETEVNGIRTAVEVRSIWEKPFCRLLYFDRKLTR 120 Query: 120 PLRAPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWADARMVPLAEGRFDLDDYV 179 PLRAPQPR+LIVAPMSGHYATLLRGTVEAFLPTHEVYITDW+DARMVPLAEGRFDLDDY+ Sbjct: 121 PLRAPQPRLLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWSDARMVPLAEGRFDLDDYI 180 Query: 180 DYVIEMLHALGGNMHVIAVCQPSVPVLAAVSVMEANHDPFVPLSMTLMGGPIDTRRNPTA 239 DYVIEML LG NMHV+AVCQP+VPVLAAVSVMEA DPF P+SMTLMGGPIDTRRNPT Sbjct: 181 DYVIEMLRFLGTNMHVMAVCQPAVPVLAAVSVMEAERDPFAPISMTLMGGPIDTRRNPTG 240 Query: 240 VNNLAEQRGIEWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKALFAH 299 VNNLA++RGI+WFR+HVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRH+DAHKALFA+ Sbjct: 241 VNNLAQERGIDWFRNHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHVDAHKALFAN 300 Query: 300 LVKGDGDLADKHREFYDEYLAVMDLTAEYYLQTVDLVFVKHALPKGEMTHRGKPVDPSKI 359 LVKGDGD DKHR+FYDEYLAVMDL AEYYLQTV+ VF++HALPKGEMTHRG VDPSK+ Sbjct: 301 LVKGDGDQVDKHRDFYDEYLAVMDLAAEYYLQTVETVFIRHALPKGEMTHRGVLVDPSKV 360 Query: 360 RRVALMTVEGEKDDISGLGQTEATHALCTAIPNHRRVHYVQKGVGHYGVFNGSRFRSEIV 419 RVALMTVEGEKDDISGLGQTEATH LC++IP+HRRVHYVQ GVGHYGVFNGSRF+SEIV Sbjct: 361 TRVALMTVEGEKDDISGLGQTEATHGLCSSIPDHRRVHYVQPGVGHYGVFNGSRFKSEIV 420 Query: 420 PRISDFMVSAANTRLSLVAAAE 441 PRI+DFM+SAA+ + L AAE Sbjct: 421 PRINDFMLSAADPKSLLAIAAE 442 >ref|YP_575589.1| polyhydroxyalkanoate depolymerase, intracellular [Nitrobacter hamburgensis X14] gb|ABE61129.1| polyhydroxyalkanoate depolymerase, intracellular [Nitrobacter hamburgensis X14] Length = 444 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/444 (83%), Positives = 407/444 (91%), Gaps = 3/444 (0%) Query: 1 MPIGEFGAPP-LAAEGSPALTTPLYWMYEMAHASLNPARAVTDATKILFQNPLNPWTHTE 59 MPIGEFG PP + AE SPA+T P+YWMYEMA ASLNPARAVTDAT++LFQNPLNPW+HTE Sbjct: 1 MPIGEFGRPPDMPAEVSPAMTAPMYWMYEMAQASLNPARAVTDATRMLFQNPLNPWSHTE 60 Query: 60 FGKSVAAGCELFERTTRRYGKPDWNLPTTEVNGLRTPVEVRSIWEKPFCRLLHFDRKFTR 119 FGKSVAAGCELFERTTRRYGKP+W L TEVNG+RTP+E+RS+WEKPFCRLL+FDR R Sbjct: 61 FGKSVAAGCELFERTTRRYGKPEWGLHETEVNGVRTPMEIRSVWEKPFCRLLYFDRMHVR 120 Query: 120 PLRAPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWADARMVPLAEGRFDLDDYV 179 PLR PQPRVL+VAPMSGHYATLLRGTVEAF+PTH+VYITDW DARMVP++EGRFDLDDYV Sbjct: 121 PLRKPQPRVLLVAPMSGHYATLLRGTVEAFMPTHDVYITDWTDARMVPVSEGRFDLDDYV 180 Query: 180 DYVIEMLHALGGNMHVIAVCQPSVPVLAAVSVMEANHDPFVPLSMTLMGGPIDTRRNPTA 239 DY+IEMLH LGGN+H+IAVCQPSVPVLAAVSVMEA DP VPLSMTLMGGPIDTR+NPTA Sbjct: 181 DYLIEMLHVLGGNVHIIAVCQPSVPVLAAVSVMEAEGDPCVPLSMTLMGGPIDTRKNPTA 240 Query: 240 VNNLAEQRGIEWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKALFAH 299 VNNLA +G +WFR++VITKVPFPHPGVMRDVYPGFLQLNGFI+MNLDRHM+AHK+LF + Sbjct: 241 VNNLAAAKGTDWFRNNVITKVPFPHPGVMRDVYPGFLQLNGFITMNLDRHMEAHKSLFKN 300 Query: 300 LVKGDGDLADKHREFYDEYLAVMDLTAEYYLQTVDLVFVKHALPKGEMTHRGKPVDPSKI 359 LVKGDGDL DKHR+FYDEYLAVMDLTAEYYLQTVDLVFVKHALP GEMTHRG+PVDPSKI Sbjct: 301 LVKGDGDLVDKHRDFYDEYLAVMDLTAEYYLQTVDLVFVKHALPNGEMTHRGRPVDPSKI 360 Query: 360 RRVALMTVEGEKDDISGLGQTEATHALCTAIPNHRRVHYVQKGVGHYGVFNGSRFRSEIV 419 RVALMTVEGEKDDISGLGQTEA HALCT+IP RR HY+QKGVGHYGVFNGSRF+SEIV Sbjct: 361 TRVALMTVEGEKDDISGLGQTEAAHALCTSIPERRRAHYMQKGVGHYGVFNGSRFKSEIV 420 Query: 420 PRISDFMVSAAN--TRLSLVAAAE 441 PRI+DFM S A +LS AAAE Sbjct: 421 PRINDFMQSNARHPAQLSRAAAAE 444 >ref|ZP_01044979.1| polyhydroxyalkanoate depolymerase [Nitrobacter sp. Nb-311A] gb|EAQ36984.1| polyhydroxyalkanoate depolymerase [Nitrobacter sp. Nb-311A] Length = 444 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/444 (82%), Positives = 408/444 (91%), Gaps = 3/444 (0%) Query: 1 MPIGEFGAPP-LAAEGSPALTTPLYWMYEMAHASLNPARAVTDATKILFQNPLNPWTHTE 59 MPIGEFG PP + AE P++T P+YWMYEMAHASLNPARAVTDAT++LFQNPLNPW HTE Sbjct: 1 MPIGEFGLPPEIPAEVGPSMTAPMYWMYEMAHASLNPARAVTDATRMLFQNPLNPWAHTE 60 Query: 60 FGKSVAAGCELFERTTRRYGKPDWNLPTTEVNGLRTPVEVRSIWEKPFCRLLHFDRKFTR 119 GKSVAAGCELFERTTRRYGKP+W L T VNG+RTP+E+RS+WE+PFCRLLHFDRK TR Sbjct: 61 LGKSVAAGCELFERTTRRYGKPEWGLHETNVNGVRTPIEIRSVWERPFCRLLHFDRKLTR 120 Query: 120 PLRAPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWADARMVPLAEGRFDLDDYV 179 PLRAPQPR+L+V+PMSGHYATLLRG+VEAF+PTHEVYITDW+DARMVP+A+GRFDLDD++ Sbjct: 121 PLRAPQPRLLLVSPMSGHYATLLRGSVEAFMPTHEVYITDWSDARMVPVADGRFDLDDFI 180 Query: 180 DYVIEMLHALGGNMHVIAVCQPSVPVLAAVSVMEANHDPFVPLSMTLMGGPIDTRRNPTA 239 DY+IEMLH LGGN+HVIAVCQPSVPVLAAVS MEA DP+VPLSMTLMGGPIDTR+NPTA Sbjct: 181 DYLIEMLHVLGGNVHVIAVCQPSVPVLAAVSAMEAARDPYVPLSMTLMGGPIDTRKNPTA 240 Query: 240 VNNLAEQRGIEWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKALFAH 299 VNNLA +RG +WFR++VITKVPFPHPGVMRDVYPGFLQLNGFISMN DRH++AHK+LF + Sbjct: 241 VNNLAAERGTDWFRNNVITKVPFPHPGVMRDVYPGFLQLNGFISMNFDRHVNAHKSLFEN 300 Query: 300 LVKGDGDLADKHREFYDEYLAVMDLTAEYYLQTVDLVFVKHALPKGEMTHRGKPVDPSKI 359 LVKGDGDL DKHR+FYDEYLAVMDLTAE+YLQTVDLVFVKHALPKGEMTHRG+ VDPSKI Sbjct: 301 LVKGDGDLVDKHRDFYDEYLAVMDLTAEFYLQTVDLVFVKHALPKGEMTHRGRLVDPSKI 360 Query: 360 RRVALMTVEGEKDDISGLGQTEATHALCTAIPNHRRVHYVQKGVGHYGVFNGSRFRSEIV 419 RVALMTVEGEKDDISGLGQTEA HALCT+IPN+RR HYVQKGVGHYGVFNGSRFRSEIV Sbjct: 361 TRVALMTVEGEKDDISGLGQTEAAHALCTSIPNNRRTHYVQKGVGHYGVFNGSRFRSEIV 420 Query: 420 PRISDFMVSAAN--TRLSLVAAAE 441 PR++DFM S A + S AA E Sbjct: 421 PRLNDFMQSNARHPAQASRAAAVE 444 >ref|YP_567267.1| polyhydroxyalkanoate depolymerase, intracellular [Rhodopseudomonas palustris BisB5] gb|ABE37366.1| polyhydroxyalkanoate depolymerase, intracellular [Rhodopseudomonas palustris BisB5] Length = 441 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/430 (84%), Positives = 400/430 (93%), Gaps = 1/430 (0%) Query: 3 IGEFGAPP-LAAEGSPALTTPLYWMYEMAHASLNPARAVTDATKILFQNPLNPWTHTEFG 61 IGEFG PP + AE SPA+TTP+YW YE+AHASLNPARA++DA +++F+NPLNPW+HT+ G Sbjct: 4 IGEFGRPPEMPAEVSPAMTTPMYWFYELAHASLNPARAMSDAARLMFKNPLNPWSHTDLG 63 Query: 62 KSVAAGCELFERTTRRYGKPDWNLPTTEVNGLRTPVEVRSIWEKPFCRLLHFDRKFTRPL 121 KS+AA CE+FERTTRRYGKP+W L TEVNG+R P+E+ ++WEKPFCRLL+F+RK PL Sbjct: 64 KSIAAACEVFERTTRRYGKPEWGLDDTEVNGMRVPIEIHNVWEKPFCRLLYFERKLEHPL 123 Query: 122 RAPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYITDWADARMVPLAEGRFDLDDYVDY 181 R PQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYI DW DARMVP+A GRFDLDDYVDY Sbjct: 124 RHPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYIADWTDARMVPVAAGRFDLDDYVDY 183 Query: 182 VIEMLHALGGNMHVIAVCQPSVPVLAAVSVMEANHDPFVPLSMTLMGGPIDTRRNPTAVN 241 VIEML LGGN+HV+AVCQPSVPVLAAVSVMEAN DPFVPLSMTLMGGPIDTRRNPT+VN Sbjct: 184 VIEMLQTLGGNVHVVAVCQPSVPVLAAVSVMEANDDPFVPLSMTLMGGPIDTRRNPTSVN 243 Query: 242 NLAEQRGIEWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKALFAHLV 301 NLA ++GI+WFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHK LF HLV Sbjct: 244 NLAAEKGIDWFRSHVITKVPFPHPGVMRDVYPGFLQLNGFISMNLDRHMDAHKNLFNHLV 303 Query: 302 KGDGDLADKHREFYDEYLAVMDLTAEYYLQTVDLVFVKHALPKGEMTHRGKPVDPSKIRR 361 +GDGDLADKHREFYDEYLAVMDLTAE+YLQTVDLVFVKHALPKGEMTHRGK V+PSKI+R Sbjct: 304 QGDGDLADKHREFYDEYLAVMDLTAEFYLQTVDLVFVKHALPKGEMTHRGKLVEPSKIKR 363 Query: 362 VALMTVEGEKDDISGLGQTEATHALCTAIPNHRRVHYVQKGVGHYGVFNGSRFRSEIVPR 421 VALMTVEGE DDISGLGQTEATH LCT+IP+ RRVHYVQKGVGHYGVFNGSRFRSEIVPR Sbjct: 364 VALMTVEGENDDISGLGQTEATHTLCTSIPDERRVHYVQKGVGHYGVFNGSRFRSEIVPR 423 Query: 422 ISDFMVSAAN 431 ISDFM+S+A+ Sbjct: 424 ISDFMLSSAS 433