BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0011.p         (184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_483682.1| two component Fis family transcriptional regula...   351   2e-95
emb|CAA06859.1| RegR [Bradyrhizobium japonicum]                       350   8e-95
ref|NP_767544.1| two-component response regulator [Bradyrhizobiu...   349   1e-94
ref|YP_567272.1| response regulator receiver [Rhodopseudomonas p...   348   2e-94
ref|NP_945924.1| two-component transcriptional regulator RegR [R...   343   5e-93

>ref|YP_483682.1| two component Fis family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gb|ABD04771.1| two component transcriptional regulator, Fis family
           [Rhodopseudomonas palustris HaA2]
          Length = 184

 Score =  351 bits (901), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/184 (92%), Positives = 179/184 (97%)

Query: 1   VNAITELNDHADRSLLIVEDDKPFLERLSRAMETRGFAVKSCDTVSDGLAEIGRAAPAFA 60
           +NAI ELNDHADRSLLIVEDDKPFLERLSRAMETRGF V SCD+VS GLA+IG+AAPAFA
Sbjct: 1   MNAIPELNDHADRSLLIVEDDKPFLERLSRAMETRGFEVTSCDSVSSGLAQIGKAAPAFA 60

Query: 61  VVDLRLGDGNGLDVVSALKRKRPEARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120
           VVDLRLGDGNGLDVVSALK++RP+ARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV
Sbjct: 61  VVDLRLGDGNGLDVVSALKKERPDARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120

Query: 121 VAALLATGTEKSELPANPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180
           VAALLA+GTEKSELP NPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK
Sbjct: 121 VAALLASGTEKSELPNNPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180

Query: 181 RAPR 184
           RAPR
Sbjct: 181 RAPR 184


>emb|CAA06859.1| RegR [Bradyrhizobium japonicum]
          Length = 184

 Score =  350 bits (897), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 169/184 (91%), Positives = 177/184 (96%)

Query: 1   VNAITELNDHADRSLLIVEDDKPFLERLSRAMETRGFAVKSCDTVSDGLAEIGRAAPAFA 60
           +NAI ELN+  DRSLLIVEDDKPFLERLSRAMETRGFAV SCDTVSDGLA+IG+AAPAFA
Sbjct: 1   MNAIAELNEQTDRSLLIVEDDKPFLERLSRAMETRGFAVTSCDTVSDGLAQIGKAAPAFA 60

Query: 61  VVDLRLGDGNGLDVVSALKRKRPEARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120
           VVDLRLGDGNGLDVVSALK+KRP+ARAIVLTGYGNIATAVTAVKMGA+DYLSKPADADDV
Sbjct: 61  VVDLRLGDGNGLDVVSALKKKRPDARAIVLTGYGNIATAVTAVKMGAIDYLSKPADADDV 120

Query: 121 VAALLATGTEKSELPANPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180
           VAALL+T  EKSELP NPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK
Sbjct: 121 VAALLSTSAEKSELPTNPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180

Query: 181 RAPR 184
           RAPR
Sbjct: 181 RAPR 184


>ref|NP_767544.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC46169.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 194

 Score =  349 bits (895), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/184 (91%), Positives = 177/184 (96%)

Query: 1   VNAITELNDHADRSLLIVEDDKPFLERLSRAMETRGFAVKSCDTVSDGLAEIGRAAPAFA 60
           +NAI ELN+  DRSLLIVEDDKPFLERLSRAMETRGFAV SCDTVSDGLA+IG+AAPAFA
Sbjct: 11  LNAIAELNEQTDRSLLIVEDDKPFLERLSRAMETRGFAVTSCDTVSDGLAQIGKAAPAFA 70

Query: 61  VVDLRLGDGNGLDVVSALKRKRPEARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120
           VVDLRLGDGNGLDVVSALK+KRP+ARAIVLTGYGNIATAVTAVKMGA+DYLSKPADADDV
Sbjct: 71  VVDLRLGDGNGLDVVSALKKKRPDARAIVLTGYGNIATAVTAVKMGAIDYLSKPADADDV 130

Query: 121 VAALLATGTEKSELPANPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180
           VAALL+T  EKSELP NPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK
Sbjct: 131 VAALLSTSAEKSELPTNPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 190

Query: 181 RAPR 184
           RAPR
Sbjct: 191 RAPR 194


>ref|YP_567272.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gb|ABE37371.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 184

 Score =  348 bits (894), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/184 (92%), Positives = 178/184 (96%)

Query: 1   VNAITELNDHADRSLLIVEDDKPFLERLSRAMETRGFAVKSCDTVSDGLAEIGRAAPAFA 60
           +NAI ELND  DRSLLIVEDDKPFLERLSRAMETRGFAV SCD+VS GLA+IG+AAPAFA
Sbjct: 1   MNAIPELNDLTDRSLLIVEDDKPFLERLSRAMETRGFAVTSCDSVSSGLAQIGKAAPAFA 60

Query: 61  VVDLRLGDGNGLDVVSALKRKRPEARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120
           VVDLRLGDGNGLDVVSALKR+RP+ARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV
Sbjct: 61  VVDLRLGDGNGLDVVSALKRERPDARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120

Query: 121 VAALLATGTEKSELPANPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180
           VAALLA+GTEKSELP NPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK
Sbjct: 121 VAALLASGTEKSELPNNPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180

Query: 181 RAPR 184
           RAPR
Sbjct: 181 RAPR 184


>ref|NP_945924.1| two-component transcriptional regulator RegR [Rhodopseudomonas
           palustris CGA009]
 ref|YP_001989609.1| Fis family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 emb|CAE26015.1| two-component transcriptional regulator RegR, Fis family
           [Rhodopseudomonas palustris CGA009]
 gb|ACE99133.1| two component transcriptional regulator, Fis family
           [Rhodopseudomonas palustris TIE-1]
          Length = 184

 Score =  343 bits (881), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/184 (90%), Positives = 177/184 (96%)

Query: 1   VNAITELNDHADRSLLIVEDDKPFLERLSRAMETRGFAVKSCDTVSDGLAEIGRAAPAFA 60
           +NAI ELNDH DRSLLIVEDDKPFL+RL+RAMETRGFAV +CD+VS GLA+IG+AAPAFA
Sbjct: 1   MNAIPELNDHTDRSLLIVEDDKPFLDRLARAMETRGFAVTACDSVSSGLAQIGKAAPAFA 60

Query: 61  VVDLRLGDGNGLDVVSALKRKRPEARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120
           VVDLRLGDGNGLDVVSALKR+RP+ RAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV
Sbjct: 61  VVDLRLGDGNGLDVVSALKRERPDCRAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDV 120

Query: 121 VAALLATGTEKSELPANPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180
           VAALL+TGTEKSE P NPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK
Sbjct: 121 VAALLSTGTEKSEPPPNPMSADRVRWEHIQRIYEMCNRNVSETARRLNMHRRTLQRILAK 180

Query: 181 RAPR 184
           RAPR
Sbjct: 181 RAPR 184