BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0010.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767543.1| hypothetical protein blr0903 [Bradyrhizobium ja...   298   2e-79
ref|YP_575592.1| hypothetical protein Nham_0232 [Nitrobacter ham...   281   2e-74
ref|YP_001243421.1| hypothetical protein BBta_7672 [Bradyrhizobi...   279   1e-73
ref|YP_001202695.1| hypothetical protein BRADO0513 [Bradyrhizobi...   277   4e-73
ref|ZP_01044973.1| hypothetical protein NB311A_07508 [Nitrobacte...   270   6e-71

>ref|NP_767543.1| hypothetical protein blr0903 [Bradyrhizobium japonicum USDA 110]
 emb|CAA06860.1| hypothetical protein [Bradyrhizobium japonicum]
 dbj|BAC46168.1| blr0903 [Bradyrhizobium japonicum USDA 110]
          Length = 163

 Score =  298 bits (763), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/158 (92%), Positives = 149/158 (94%)

Query: 1   MDSSARQIALVPAPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60
           MDSSAR IALVP PDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER
Sbjct: 1   MDSSARNIALVPPPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60

Query: 61  GEIWIVEIKSSVEDLRADQKWQDYRMHCDRLFFAFTQDLPCEIFPVDTGLIIADAYGAHL 120
           GEIWIVEIKSSVEDLRADQKW +YR HCDRLFFAFTQDLPCEIFP  TGLIIADAYGAHL
Sbjct: 61  GEIWIVEIKSSVEDLRADQKWHEYRAHCDRLFFAFTQDLPCEIFPQGTGLIIADAYGAHL 120

Query: 121 HCEAPEHRLPAATRKAMTVRFAMAAAQRINRLVDPQGH 158
           HCEAPEH++ AATRK MTVRFAMAAA RINRLVDPQGH
Sbjct: 121 HCEAPEHKIAAATRKQMTVRFAMAAALRINRLVDPQGH 158


>ref|YP_575592.1| hypothetical protein Nham_0232 [Nitrobacter hamburgensis X14]
 gb|ABE61132.1| protein of unknown function DUF1052 [Nitrobacter hamburgensis X14]
          Length = 163

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 144/158 (91%)

Query: 1   MDSSARQIALVPAPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60
           M+S+A  IALVP PDRRQSETALAIARGT R LRSLGF C+SELPLPSGRRADLVALN R
Sbjct: 1   MESNAVHIALVPPPDRRQSETALAIARGTGRFLRSLGFCCVSELPLPSGRRADLVALNAR 60

Query: 61  GEIWIVEIKSSVEDLRADQKWQDYRMHCDRLFFAFTQDLPCEIFPVDTGLIIADAYGAHL 120
           G+IWIVEIKSS EDLRAD+KWQDYR HCDRLFFAFT+DLPC IFP DTGLI+ADAYGA+L
Sbjct: 61  GDIWIVEIKSSAEDLRADRKWQDYRAHCDRLFFAFTRDLPCGIFPTDTGLIVADAYGAYL 120

Query: 121 HCEAPEHRLPAATRKAMTVRFAMAAAQRINRLVDPQGH 158
           HCEAPEHRLPA TRKAM +RFAMAAAQR+NRL DPQGH
Sbjct: 121 HCEAPEHRLPAPTRKAMMLRFAMAAAQRLNRLADPQGH 158


>ref|YP_001243421.1| hypothetical protein BBta_7672 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39515.1| hypothetical protein BBta_7672 [Bradyrhizobium sp. BTAi1]
          Length = 160

 Score =  279 bits (713), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 148/158 (93%), Gaps = 1/158 (0%)

Query: 1   MDSSARQIALVPAPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60
           M++SA +I+LVP  DRRQSETALAIARGT+RLLRSLGF+ ISELPLPSGRRADLVALNER
Sbjct: 1   MNTSAARISLVPI-DRRQSETALAIARGTSRLLRSLGFATISELPLPSGRRADLVALNER 59

Query: 61  GEIWIVEIKSSVEDLRADQKWQDYRMHCDRLFFAFTQDLPCEIFPVDTGLIIADAYGAHL 120
           GEIWIVEIKSS+EDLRADQKW+DYR HCDRLFFAFTQ+LPCE+FP DTGLI+ADAYGAHL
Sbjct: 60  GEIWIVEIKSSLEDLRADQKWEDYRAHCDRLFFAFTQELPCEVFPQDTGLIVADAYGAHL 119

Query: 121 HCEAPEHRLPAATRKAMTVRFAMAAAQRINRLVDPQGH 158
            CEAPEH+LPA TRK MTVRFA+AAA R+NRL+DPQGH
Sbjct: 120 QCEAPEHKLPAPTRKLMTVRFALAAAHRMNRLIDPQGH 157


>ref|YP_001202695.1| hypothetical protein BRADO0513 [Bradyrhizobium sp. ORS 278]
 emb|CAL74452.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 160

 Score =  277 bits (709), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 146/158 (92%), Gaps = 1/158 (0%)

Query: 1   MDSSARQIALVPAPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60
           M+SSA +I+LVPA DRRQSETALAIARGT+RLLRSLGF+ +SELPLPSGRRADLVALN R
Sbjct: 1   MESSAARISLVPA-DRRQSETALAIARGTSRLLRSLGFATVSELPLPSGRRADLVALNAR 59

Query: 61  GEIWIVEIKSSVEDLRADQKWQDYRMHCDRLFFAFTQDLPCEIFPVDTGLIIADAYGAHL 120
           G IWIVEIKSSVEDLRAD KW+ YR HCDRLFFAFTQDLPCE+FP  TGLI+ADAYGAHL
Sbjct: 60  GAIWIVEIKSSVEDLRADHKWEAYRAHCDRLFFAFTQDLPCELFPKSTGLIVADAYGAHL 119

Query: 121 HCEAPEHRLPAATRKAMTVRFAMAAAQRINRLVDPQGH 158
           HCEAPEH+LPA TRK MTVRFA+AAAQR+NRL+DPQGH
Sbjct: 120 HCEAPEHKLPAPTRKLMTVRFALAAAQRMNRLIDPQGH 157


>ref|ZP_01044973.1| hypothetical protein NB311A_07508 [Nitrobacter sp. Nb-311A]
 gb|EAQ36978.1| hypothetical protein NB311A_07508 [Nitrobacter sp. Nb-311A]
          Length = 163

 Score =  270 bits (690), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 141/158 (89%)

Query: 1   MDSSARQIALVPAPDRRQSETALAIARGTARLLRSLGFSCISELPLPSGRRADLVALNER 60
           M ++A  I LV  PDRRQS TALA+ARGT RLLRSLGF+C+SEL LPSGRRADLVA+N R
Sbjct: 1   MKTNADHITLVAPPDRRQSGTALAVARGTGRLLRSLGFACLSELSLPSGRRADLVAVNGR 60

Query: 61  GEIWIVEIKSSVEDLRADQKWQDYRMHCDRLFFAFTQDLPCEIFPVDTGLIIADAYGAHL 120
           GEIWIVEIKSSVEDLRAD+KWQDYR HCDRLFFAFT+DLPC+IFP DTGLI+ADAYGAHL
Sbjct: 61  GEIWIVEIKSSVEDLRADRKWQDYREHCDRLFFAFTRDLPCDIFPGDTGLIVADAYGAHL 120

Query: 121 HCEAPEHRLPAATRKAMTVRFAMAAAQRINRLVDPQGH 158
           HCEAPEHRL A TRKAM +RF +AAAQR+NRL DPQGH
Sbjct: 121 HCEAPEHRLSAPTRKAMMLRFGLAAAQRLNRLADPQGH 158