BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0015.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57560.1| RhcC1 protein [Bradyrhizobium elkanii]                167   3e-40
emb|CAQ57552.1| RhcC1 protein [Bradyrhizobium elkanii]                 70   1e-10
gb|AAG60794.1|AF322012_99 RhcC1 [Bradyrhizobium japonicum]             67   1e-09
ref|NP_768451.1| RhcC1 protein [Bradyrhizobium japonicum USDA 11...    67   1e-09
ref|NP_444156.1| outer membrane protein RhcC1; component of type...    55   4e-06

>emb|CAQ57560.1| RhcC1 protein [Bradyrhizobium elkanii]
          Length = 82

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/82 (98%), Positives = 82/82 (100%)

Query: 1  LIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFRDGKAVAYRNDATGFEQQLSE 60
          +IKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFRDGKAVAYRNDATGFEQQLSE
Sbjct: 1  MIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFRDGKAVAYRNDATGFEQQLSE 60

Query: 61 LGGSGILHRSLRFFLMRTFELL 82
          LGGSGILHRSLRFFLMRTFELL
Sbjct: 61 LGGSGILHRSLRFFLMRTFELL 82


>emb|CAQ57552.1| RhcC1 protein [Bradyrhizobium elkanii]
          Length = 231

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 35/40 (87%)

Query: 1   LIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFR 40
           L  LYN QWYYDG VLY+S AH+AQSRL++L+PISFDAF+
Sbjct: 88  LTNLYNLQWYYDGLVLYISAAHEAQSRLMVLSPISFDAFK 127


>gb|AAG60794.1|AF322012_99 RhcC1 [Bradyrhizobium japonicum]
          Length = 230

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 1   LIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFR 40
           L  LYN QWYYDG VLY+S A +AQSRL++LNPISFDA +
Sbjct: 90  LTALYNLQWYYDGLVLYISAAQEAQSRLIVLNPISFDALK 129


>ref|NP_768451.1| RhcC1 protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47076.1| RhcC1 protein [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 1   LIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFR 40
           L  LYN QWYYDG VLY+S A +AQSRL++LNPISFDA +
Sbjct: 97  LTALYNLQWYYDGLVLYISAAQEAQSRLIVLNPISFDALK 136


>ref|NP_444156.1| outer membrane protein RhcC1; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 sp|P55712.1|NOLW_RHISN RecName: Full=Nodulation protein nolW
 gb|AAB91943.1| outermembrane protein RhcC1; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 234

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 1   LIKLYNFQWYYDGRVLYVSDAHKAQSRLLILNPISFDAFR 40
           L  LY+ QWYYDG VLYVS A +AQ+R+L+L+ + F AF+
Sbjct: 93  LTDLYDLQWYYDGVVLYVSAAKEAQTRMLVLSSVHFSAFK 132