BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0004.p         (54 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57575.1| hypothetical protein [Bradyrhizobium elkanii]         113   9e-24

>emb|CAQ57575.1| hypothetical protein [Bradyrhizobium elkanii]
          Length = 54

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MPDVRHGPHGAPTGRKTDPARVFWSKVNGRQVVNTTLRKKAHDNLAQTVEWQRG 54
          MPDVRHGPHGAPTGRKTDPARVFWSKVNGRQVVNTTLRKKAHDNLAQTVEWQRG
Sbjct: 1  MPDVRHGPHGAPTGRKTDPARVFWSKVNGRQVVNTTLRKKAHDNLAQTVEWQRG 54