BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0239.0002.p (427 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_040711.1| F [Enterobacteria phage phiX174 sensu lato] >gi... 895 0.0 gb|ADC55535.1| protein F [Enterobacteria phage phiX174] 892 0.0 gb|ACO94986.1| Protein F [Enterobacteria phage phiX174] >gi|3044... 891 0.0 pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bact... 890 0.0 gb|ADM34310.1| protein F [Enterobacteria phage phiX174] >gi|3044... 890 0.0 >ref|NP_040711.1| F [Enterobacteria phage phiX174 sensu lato] sp|P03641.2|F_BPPHX RecName: Full=Capsid protein F; AltName: Full=F protein; AltName: Full=GPF gb|AAA32578.1| F [Enterobacteria phage phiX174] Length = 427 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/427 (100%), Positives = 427/427 (100%) Query: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA Sbjct: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 Query: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI Sbjct: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 Query: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL Sbjct: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 Query: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR 240 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR Sbjct: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR 240 Query: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI Sbjct: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 Query: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS Sbjct: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 Query: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT Sbjct: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 Query: 421 RDSIMTS 427 RDSIMTS Sbjct: 421 RDSIMTS 427 >gb|ADC55535.1| protein F [Enterobacteria phage phiX174] Length = 427 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/427 (99%), Positives = 426/427 (99%) Query: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA Sbjct: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 Query: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI Sbjct: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 Query: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL Sbjct: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 Query: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR 240 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRY DVISSFGGKTSYDADNRPLLVMR Sbjct: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMR 240 Query: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI Sbjct: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 Query: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS Sbjct: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 Query: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT Sbjct: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 Query: 421 RDSIMTS 427 RDSIMTS Sbjct: 421 RDSIMTS 427 >gb|ACO94986.1| Protein F [Enterobacteria phage phiX174] gb|ADM34354.1| protein F [Enterobacteria phage phiX174] Length = 427 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/427 (99%), Positives = 425/427 (99%) Query: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA Sbjct: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 Query: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT GYIDHAAFLGTINPDTNKI Sbjct: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTAGYIDHAAFLGTINPDTNKI 120 Query: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL Sbjct: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 Query: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR 240 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRY DVISSFGGKTSYDADNRPLLVMR Sbjct: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMR 240 Query: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI Sbjct: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 Query: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS Sbjct: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 Query: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT Sbjct: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 Query: 421 RDSIMTS 427 RDSIMTS Sbjct: 421 RDSIMTS 427 >pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage Phix174 And Its Functional Implications pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174 Length = 426 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/426 (99%), Positives = 425/426 (99%) Query: 2 SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAI 61 SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAI Sbjct: 1 SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAI 60 Query: 62 DSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP 121 DSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP Sbjct: 61 DSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP 120 Query: 122 KHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELS 181 KHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELS Sbjct: 121 KHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELS 180 Query: 182 RQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRS 241 RQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRY DVISSFGGKTSYDADNRPLLVMRS Sbjct: 181 RQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRS 240 Query: 242 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQ 301 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQ Sbjct: 241 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQ 300 Query: 302 YLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSP 361 YLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSP Sbjct: 301 YLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSP 360 Query: 362 AYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTR 421 AYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTR Sbjct: 361 AYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTR 420 Query: 422 DSIMTS 427 DSIMTS Sbjct: 421 DSIMTS 426 >gb|ADM34310.1| protein F [Enterobacteria phage phiX174] gb|ADM34321.1| protein F [Enterobacteria phage phiX174] gb|ADM34365.1| protein F [Enterobacteria phage phiX174] gb|ADM34376.1| protein F [Enterobacteria phage phiX174] gb|ADM34387.1| protein F [Enterobacteria phage phiX174] gb|ADM34398.1| protein F [Enterobacteria phage phiX174] gb|ADM34409.1| protein F [Enterobacteria phage phiX174] gb|ADM34420.1| protein F [Enterobacteria phage phiX174] gb|ADM34431.1| protein F [Enterobacteria phage phiX174] gb|ADM34475.1| protein F [Enterobacteria phage phiX174] gb|ADM34486.1| protein F [Enterobacteria phage phiX174] gb|ADM34497.1| protein F [Enterobacteria phage phiX174] gb|ADM34508.1| protein F [Enterobacteria phage phiX174] gb|ADM34519.1| protein F [Enterobacteria phage phiX174] gb|ADM34530.1| protein F [Enterobacteria phage phiX174] gb|ADM34541.1| protein F [Enterobacteria phage phiX174] gb|ADM34552.1| protein F [Enterobacteria phage phiX174] gb|ADM34563.1| protein F [Enterobacteria phage phiX174] gb|ADM34574.1| protein F [Enterobacteria phage phiX174] gb|ADM34585.1| protein F [Enterobacteria phage phiX174] gb|ADM34596.1| protein F [Enterobacteria phage phiX174] gb|ADM34607.1| protein F [Enterobacteria phage phiX174] gb|ADM34629.1| protein F [Enterobacteria phage phiX174] gb|ADM34662.1| protein F [Enterobacteria phage phiX174] gb|ADM34684.1| protein F [Enterobacteria phage phiX174] gb|ADM34706.1| protein F [Enterobacteria phage phiX174] gb|ADM34717.1| protein F [Enterobacteria phage phiX174] gb|ADM34750.1| protein F [Enterobacteria phage phiX174] Length = 427 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/427 (99%), Positives = 426/427 (99%) Query: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA Sbjct: 1 MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 60 Query: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI Sbjct: 61 IDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKI 120 Query: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL Sbjct: 121 PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETEL 180 Query: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMR 240 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRY DVISSFGGKTSYDADNRPLLVMR Sbjct: 181 SRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMR 240 Query: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI Sbjct: 241 SNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 300 Query: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS Sbjct: 301 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVS 360 Query: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT Sbjct: 361 PAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTT 420 Query: 421 RDSIMTS 427 RDSI+TS Sbjct: 421 RDSIITS 427