BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0238.0003.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202451.1| putative methyltransferase [Bradyrhizobium s... 427 e-118 ref|NP_767158.1| hypothetical protein blr0518 [Bradyrhizobium ja... 417 e-115 ref|YP_001236436.1| hypothetical protein BBta_0234 [Bradyrhizobi... 400 e-109 ref|ZP_08627972.1| hypothetical protein CSIRO_1042 [Bradyrhizobi... 343 1e-92 ref|YP_318506.1| methyltransferase FkbM [Nitrobacter winogradsky... 336 2e-90 >ref|YP_001202451.1| putative methyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL74201.1| conserved hypothetical protein; putative methyltransferase [Bradyrhizobium sp. ORS 278] Length = 275 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/274 (76%), Positives = 233/274 (85%) Query: 11 VIPSNDISPAPFGAFAPNAAQAAIIRLAHASGLKRGAFRPWLSKLVNLFGTGPLDVTYQG 70 + P ND SP PFGAFAPNAAQA +IRLAH SGLKRGAFRP L++ VNL GP+DV+YQG Sbjct: 1 MTPDNDPSPPPFGAFAPNAAQALVIRLAHGSGLKRGAFRPMLTRAVNLLRAGPVDVSYQG 60 Query: 71 ASFRFYHQQSATERGALFNPDYNLEELAFLRAHVGADGTFVDLGANVGTYALALARDVGP 130 A+FRFYHQ SATERGALFNPDYN EEL FLR+HV GT VD+GANVGT+AL LAR VGP Sbjct: 61 ANFRFYHQLSATERGALFNPDYNREELDFLRSHVPPAGTAVDVGANVGTFALPLARHVGP 120 Query: 131 GGKVIAIEPHPVTHARLKFNTEASGFPQVRLVAAAAGPTDGELMIETDGDNLGASHIVTG 190 G+VIA+EPHPVTHARL FN +AS QVRLVAAAAG +DGE+MIETDGDNLGASHIV G Sbjct: 121 AGRVIAVEPHPVTHARLSFNRDASALSQVRLVAAAAGDSDGEVMIETDGDNLGASHIVVG 180 Query: 191 TPTGKAFKVPSLRLQRILDEAGASKVDALKIDVEGFEDRVLIGFFRDAPQALWPGAVVIE 250 T +AFKVPSLRLQ IL++AGA+KVDALKIDVEGFEDRVL FFRDAPQ LWP AVVIE Sbjct: 181 TAGAEAFKVPSLRLQAILEQAGATKVDALKIDVEGFEDRVLTCFFRDAPQTLWPRAVVIE 240 Query: 251 HLSKDEWTDDCIADMHARGYVEQGRTRSNTLLVR 284 HLS+DEW +DC+ADM RGY E GRTRSNTLL+R Sbjct: 241 HLSRDEWQNDCLADMIRRGYREVGRTRSNTLLLR 274 >ref|NP_767158.1| hypothetical protein blr0518 [Bradyrhizobium japonicum USDA 110] dbj|BAC45783.1| blr0518 [Bradyrhizobium japonicum USDA 110] Length = 285 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/285 (73%), Positives = 228/285 (80%), Gaps = 1/285 (0%) Query: 1 MHAALLTRP-CVIPSNDISPAPFGAFAPNAAQAAIIRLAHASGLKRGAFRPWLSKLVNLF 59 MHA L TR C+ N S APFG FAPNAAQAAIIRLA SGLKRGAFRPWLS+LVNL Sbjct: 1 MHAPLATRTTCLTTDNAPSSAPFGTFAPNAAQAAIIRLATQSGLKRGAFRPWLSRLVNLL 60 Query: 60 GTGPLDVTYQGASFRFYHQQSATERGALFNPDYNLEELAFLRAHVGADGTFVDLGANVGT 119 GP+DV YQGASFRFYHQ SATERGALFNPDYNL+EL FLR H A G FVD+GANVGT Sbjct: 61 RGGPVDVQYQGASFRFYHQGSATERGALFNPDYNLDELDFLRQHTPAGGVFVDVGANVGT 120 Query: 120 YALALARDVGPGGKVIAIEPHPVTHARLKFNTEASGFPQVRLVAAAAGPTDGELMIETDG 179 +AL +AR VGP GKVIAIEPHP+T RL FN AS QVRLV AAAG +DGELMIE+ G Sbjct: 121 FALVMARQVGPAGKVIAIEPHPLTFGRLSFNHAASKATQVRLVQAAAGDSDGELMIESGG 180 Query: 180 DNLGASHIVTGTPTGKAFKVPSLRLQRILDEAGASKVDALKIDVEGFEDRVLIGFFRDAP 239 NLGA+H+VTGT + A KVPSLRL RILDEAG ++VDALKIDVEGFEDRVL GFFRDAP Sbjct: 181 GNLGATHVVTGTASADAIKVPSLRLMRILDEAGVTQVDALKIDVEGFEDRVLTGFFRDAP 240 Query: 240 QALWPGAVVIEHLSKDEWTDDCIADMHARGYVEQGRTRSNTLLVR 284 QALWP AVVIEHLS+ EW DCIADM ARG+ +TRSNT L R Sbjct: 241 QALWPRAVVIEHLSQKEWQQDCIADMVARGFAIARKTRSNTFLSR 285 >ref|YP_001236436.1| hypothetical protein BBta_0234 [Bradyrhizobium sp. BTAi1] gb|ABQ32530.1| hypothetical protein BBta_0234 [Bradyrhizobium sp. BTAi1] Length = 275 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/274 (71%), Positives = 224/274 (81%) Query: 11 VIPSNDISPAPFGAFAPNAAQAAIIRLAHASGLKRGAFRPWLSKLVNLFGTGPLDVTYQG 70 + P ND SPAPFGAFAPNAAQA ++R+A SGLKRGAFRP L+++VNL GPLDV YQG Sbjct: 1 MTPDNDPSPAPFGAFAPNAAQALVVRVARGSGLKRGAFRPMLTRIVNLLRAGPLDVDYQG 60 Query: 71 ASFRFYHQQSATERGALFNPDYNLEELAFLRAHVGADGTFVDLGANVGTYALALARDVGP 130 A FRF+HQ SATERGALFNP+YN EEL FLR+H+ G VD+GANVGT+AL LAR VGP Sbjct: 61 ARFRFHHQVSATERGALFNPEYNREELDFLRSHIPPGGVAVDVGANVGTFALPLARHVGP 120 Query: 131 GGKVIAIEPHPVTHARLKFNTEASGFPQVRLVAAAAGPTDGELMIETDGDNLGASHIVTG 190 G VIAIEPHPVTHARL FN +AS PQV+L A AAG +DGE+MIETDG NLGASHIV G Sbjct: 121 TGLVIAIEPHPVTHARLAFNRDASALPQVKLFAVAAGDSDGEVMIETDGVNLGASHIVVG 180 Query: 191 TPTGKAFKVPSLRLQRILDEAGASKVDALKIDVEGFEDRVLIGFFRDAPQALWPGAVVIE 250 +A KVPSLRLQ IL++AGA+++DALKIDVEGFEDRVL FFR AP LWP AVVIE Sbjct: 181 AAGSEAIKVPSLRLQAILEQAGATRIDALKIDVEGFEDRVLTCFFRHAPDLLWPRAVVIE 240 Query: 251 HLSKDEWTDDCIADMHARGYVEQGRTRSNTLLVR 284 HLS+DEW +DC+ADM RGY E GRTRSNTLL+R Sbjct: 241 HLSRDEWQNDCLADMIGRGYREIGRTRSNTLLLR 274 >ref|ZP_08627972.1| hypothetical protein CSIRO_1042 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09267.1| hypothetical protein CSIRO_1042 [Bradyrhizobiaceae bacterium SG-6C] Length = 289 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/277 (63%), Positives = 204/277 (73%), Gaps = 5/277 (1%) Query: 8 RPCVIPSNDISPAPFGAFAPNAAQAAIIRLAHASGLKRGAFRPWLSKLVNLFGTGPLDVT 67 RP S+D PFG +APNA Q +I AH SGLKRGAFRPWLS+LV+L G GP+D + Sbjct: 17 RPMTNESDD-DQKPFGTYAPNALQRVVIAAAHGSGLKRGAFRPWLSRLVHLCGAGPIDAS 75 Query: 68 YQGASFRFYHQQSATERGALFNPDYNLEELAFLRAHVGADGTFVDLGANVGTYALALARD 127 YQGASFR +H S TERGALFNPDYNL EL FLR H GTFVD+GANVGTYA++LA+ Sbjct: 76 YQGASFRLHHLASGTERGALFNPDYNLPELDFLREHAPKGGTFVDVGANVGTYAVSLAKH 135 Query: 128 VGPGGKVIAIEPHPVTHARLKFNTEASGFPQVRLVAAAAGPTDGELMIETDGDNLGASHI 187 VG G+V+AIEPHPV++ARL FN AS + LV AAAG T+GELMIETDG NLGASHI Sbjct: 136 VGARGRVVAIEPHPVSNARLAFNASASKLTNLTLVRAAAGDTEGELMIETDGHNLGASHI 195 Query: 188 VTGTPTGKAFKVPSLRLQRILDEAGASKVDALKIDVEGFEDRVLIGFFRDAPQALWPGAV 247 + TG KVP+ RL IL +AG + VDALKIDVEG+EDRVL FFR+AP++LWP AV Sbjct: 196 ---SETG-GLKVPAHRLLTILRDAGITHVDALKIDVEGYEDRVLTPFFREAPESLWPRAV 251 Query: 248 VIEHLSKDEWTDDCIADMHARGYVEQGRTRSNTLLVR 284 IEHL W DCI DM GY G+TRSNTLLVR Sbjct: 252 AIEHLEHAAWLHDCIKDMIGLGYAIAGKTRSNTLLVR 288 >ref|YP_318506.1| methyltransferase FkbM [Nitrobacter winogradskyi Nb-255] gb|ABA05154.1| methyltransferase FkbM [Nitrobacter winogradskyi Nb-255] Length = 268 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 165/266 (62%), Positives = 202/266 (75%), Gaps = 1/266 (0%) Query: 17 ISPAPFGAFAPNAAQAAIIRLAHASGLKRGAFRPWLSKLVNLFGTGPLDVTYQGASFRFY 76 I+P PFG+FAP+ AQ ++ S L+RGAFRP +S+L+NL GP+D TYQGASFRFY Sbjct: 2 IAP-PFGSFAPSWAQKKLLHAVRRSRLRRGAFRPAMSRLLNLLRPGPIDDTYQGASFRFY 60 Query: 77 HQQSATERGALFNPDYNLEELAFLRAHVGADGTFVDLGANVGTYALALARDVGPGGKVIA 136 HQ S TERGAL NPDYNLEEL FLR H G FVD+GANVGTYALA+AR VG G V+A Sbjct: 61 HQYSGTERGALLNPDYNLEELRFLRKHTPVGGCFVDIGANVGTYALAMARHVGAEGIVLA 120 Query: 137 IEPHPVTHARLKFNTEASGFPQVRLVAAAAGPTDGELMIETDGDNLGASHIVTGTPTGKA 196 IEPHPV + RL FN EASG V L+ AAAG ++G+L+I TDG+NLGASH+V+ + A Sbjct: 121 IEPHPVAYERLSFNREASGSRNVHLMQAAAGESEGDLLIATDGNNLGASHVVSAGASRDA 180 Query: 197 FKVPSLRLQRILDEAGASKVDALKIDVEGFEDRVLIGFFRDAPQALWPGAVVIEHLSKDE 256 V S+RL++ L+ AG V ALKIDVEG+EDRVL+GFF+DAP+++WP A+VIEHLS+ E Sbjct: 181 ITVRSVRLRQALESAGIGHVHALKIDVEGYEDRVLVGFFKDAPRSMWPQAIVIEHLSRSE 240 Query: 257 WTDDCIADMHARGYVEQGRTRSNTLL 282 W+ DCIA M GYV G TRSNT+L Sbjct: 241 WSTDCIALMLECGYVVAGTTRSNTML 266