BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0024.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769138.1| hypothetical protein bll2498 [Bradyrhizobium ja...   254   4e-66
ref|YP_319211.1| hypothetical protein Nwi_2606 [Nitrobacter wino...   248   2e-64
ref|ZP_01045245.1| hypothetical protein NB311A_14937 [Nitrobacte...   248   2e-64
ref|YP_484690.1| hypothetical protein RPB_1069 [Rhodopseudomonas...   247   4e-64
ref|YP_001204097.1| hypothetical protein BRADO2002 [Bradyrhizobi...   246   1e-63

>ref|NP_769138.1| hypothetical protein bll2498 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47763.1| bll2498 [Bradyrhizobium japonicum USDA 110]
          Length = 163

 Score =  254 bits (648), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 137/157 (87%)

Query: 3   KPGPISAKPLSILLSDVFTDAYAKQGFAARELVTRWTEIAGERIAAYCEPLKMQWPRPVE 62
           KPGPISAKPLS+LL+DVF +AYAKQGFAARELVTRW +IAG  IAA+ EPLKMQWPRPVE
Sbjct: 7   KPGPISAKPLSLLLNDVFAEAYAKQGFAARELVTRWAQIAGAEIAAHAEPLKMQWPRPVE 66

Query: 63  GQPQEPATLVLRVEGPMALEIQHSSDVILERVNRFFGWHAVGRLTIRQAPLSRRSRPSRP 122
           GQPQEPATLVLRVEGPMALEIQHS+DVILERVNRFFGW AVG+L  RQAPLSR  RP RP
Sbjct: 67  GQPQEPATLVLRVEGPMALEIQHSADVILERVNRFFGWSAVGKLAFRQAPLSRAKRPVRP 126

Query: 123 RPPDAKTVAREAANLAAVEDDDLRAALARLGASIKRN 159
            PPD K+VA+    L  +ED+ L++ALARLGA+IKRN
Sbjct: 127 GPPDPKSVAKVEETLGDIEDEQLKSALARLGAAIKRN 163


>ref|YP_319211.1| hypothetical protein Nwi_2606 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05859.1| Protein of unknown function DUF1159 [Nitrobacter winogradskyi
           Nb-255]
          Length = 209

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 138/159 (86%)

Query: 1   MSKPGPISAKPLSILLSDVFTDAYAKQGFAARELVTRWTEIAGERIAAYCEPLKMQWPRP 60
           MSKPGPISAKPLS LL  VF+DAYA+QGFA+RELVTRW  IAG  IAA+ EP+K+QWPRP
Sbjct: 51  MSKPGPISAKPLSALLGRVFSDAYARQGFASRELVTRWAAIAGPEIAAHSEPIKIQWPRP 110

Query: 61  VEGQPQEPATLVLRVEGPMALEIQHSSDVILERVNRFFGWHAVGRLTIRQAPLSRRSRPS 120
           VEGQ QEPATLVLRVEGP+ALEIQHSS+VIL+RVNRFFGW+AVGRL +RQAPLSR++   
Sbjct: 111 VEGQQQEPATLVLRVEGPVALEIQHSSNVILQRVNRFFGWNAVGRLALRQAPLSRKTSRR 170

Query: 121 RPRPPDAKTVAREAANLAAVEDDDLRAALARLGASIKRN 159
             RPPDA  VAR A  L ++EDDDLRAALARLGASIKRN
Sbjct: 171 SARPPDATDVARVAGTLTSIEDDDLRAALARLGASIKRN 209


>ref|ZP_01045245.1| hypothetical protein NB311A_14937 [Nitrobacter sp. Nb-311A]
 gb|EAQ36573.1| hypothetical protein NB311A_14937 [Nitrobacter sp. Nb-311A]
          Length = 159

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 139/159 (87%)

Query: 1   MSKPGPISAKPLSILLSDVFTDAYAKQGFAARELVTRWTEIAGERIAAYCEPLKMQWPRP 60
           MSKPGPISAKPLS LL DVF+DAYA+QGFA+RELVTRW EIAG  IAA+ EP+K++WPRP
Sbjct: 1   MSKPGPISAKPLSALLGDVFSDAYARQGFASRELVTRWAEIAGPEIAAHSEPMKIRWPRP 60

Query: 61  VEGQPQEPATLVLRVEGPMALEIQHSSDVILERVNRFFGWHAVGRLTIRQAPLSRRSRPS 120
           +EGQPQEPATLVLRVEGP+ALEIQHSSDVIL+RVNRFFGW+AVGRL +RQAPLSR++   
Sbjct: 61  IEGQPQEPATLVLRVEGPVALEIQHSSDVILQRVNRFFGWNAVGRLALRQAPLSRKTLRK 120

Query: 121 RPRPPDAKTVAREAANLAAVEDDDLRAALARLGASIKRN 159
             R PD   VA+ A  L+++ED DLRAALARLGASIKRN
Sbjct: 121 SVRLPDPTEVAKVAGTLSSIEDTDLRAALARLGASIKRN 159


>ref|YP_484690.1| hypothetical protein RPB_1069 [Rhodopseudomonas palustris HaA2]
 gb|ABD05779.1| Protein of unknown function DUF1159 [Rhodopseudomonas palustris
           HaA2]
          Length = 175

 Score =  247 bits (631), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 136/159 (85%)

Query: 1   MSKPGPISAKPLSILLSDVFTDAYAKQGFAARELVTRWTEIAGERIAAYCEPLKMQWPRP 60
           + KPGPISA+PLS LL     +A+AKQGFAARELVTRW EIAG +IAA+CEPLKMQWPRP
Sbjct: 17  IYKPGPISARPLSGLLGATLNEAFAKQGFAARELVTRWPEIAGAQIAAHCEPLKMQWPRP 76

Query: 61  VEGQPQEPATLVLRVEGPMALEIQHSSDVILERVNRFFGWHAVGRLTIRQAPLSRRSRPS 120
           VEGQPQEPATLVLRVEGPMALEIQHSSD IL+RVNRFFGW AVG+L +RQAPL+R+SR  
Sbjct: 77  VEGQPQEPATLVLRVEGPMALEIQHSSDQILQRVNRFFGWAAVGKLALRQAPLTRKSRKP 136

Query: 121 RPRPPDAKTVAREAANLAAVEDDDLRAALARLGASIKRN 159
            P+PPD   VA+ AA L AV DDDLR ALARLGA+IKRN
Sbjct: 137 LPQPPDPAAVAQIAAGLDAVADDDLRTALARLGATIKRN 175


>ref|YP_001204097.1| hypothetical protein BRADO2002 [Bradyrhizobium sp. ORS 278]
 emb|CAL75860.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 159

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 136/159 (85%)

Query: 1   MSKPGPISAKPLSILLSDVFTDAYAKQGFAARELVTRWTEIAGERIAAYCEPLKMQWPRP 60
           M+KPG ++AKPL++++ DV T AYAKQGFAARELVTRW EIAG  IA + +PLKMQWPRP
Sbjct: 1   MAKPGRLTAKPLALMMGDVLTAAYAKQGFAARELVTRWPEIAGREIAEHAQPLKMQWPRP 60

Query: 61  VEGQPQEPATLVLRVEGPMALEIQHSSDVILERVNRFFGWHAVGRLTIRQAPLSRRSRPS 120
           VEGQPQEPATL+LRVEGPMALEIQHSSDVILERVNRFFGWHAVG+L +RQ PL+R     
Sbjct: 61  VEGQPQEPATLILRVEGPMALEIQHSSDVILERVNRFFGWHAVGKLALRQGPLTRPPVKR 120

Query: 121 RPRPPDAKTVAREAANLAAVEDDDLRAALARLGASIKRN 159
           RP PPD K VA+ AA+L A+EDD LR ALARLGA+IKRN
Sbjct: 121 RPAPPDPKQVAKVAASLTAIEDDALRDALARLGAAIKRN 159