BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0012.p         (44 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766734.1| hypothetical protein blr0094 [Bradyrhizobium ja...    34   6.3  

>ref|NP_766734.1| hypothetical protein blr0094 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45359.1| blr0094 [Bradyrhizobium japonicum USDA 110]
          Length = 366

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 20  PYTKAASDEEDRLLNSKLKSICRGC 44
           P   ++S +ED LL+ K+K ICRGC
Sbjct: 342 PAANSSSSKEDALLDKKIKGICRGC 366