BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0233.0010.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769032.1| dioxygenase subunit [Bradyrhizobium japonicum U...   192   1e-47
ref|YP_001238274.1| putative oxydoreductase [Bradyrhizobium sp. ...   166   1e-39
ref|YP_001203977.1| putative oxydoreductase [Bradyrhizobium sp. ...   158   3e-37
ref|YP_004108078.1| ferredoxin [Rhodopseudomonas palustris DX-1]...   149   1e-34
ref|YP_001993112.1| oxidoreductase FAD/NAD(P)-binding domain-con...   146   9e-34

>ref|NP_769032.1| dioxygenase subunit [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47657.1| blr2392 [Bradyrhizobium japonicum USDA 110]
          Length = 326

 Score =  192 bits (488), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 101/120 (84%)

Query: 1   MRFIESWTPATLVATRDLTPSIREFLIKPENFDGAAYPVGSHINIAVTIDGRPDTRSYSL 60
           MRFIE+WTPATLV+TRDL P IREFLI P+ FDGAAYPVGSHIN++VTIDG P+TRSYSL
Sbjct: 1   MRFIETWTPATLVSTRDLAPGIREFLILPDQFDGAAYPVGSHINVSVTIDGLPETRSYSL 60

Query: 61  VGEPERTGYRIAVRRAEDSRGGSQYMWSLAPGARLTITLPASLLPIDWARRHYCLKRDGF 120
           VGE    G RIAVRRAEDSRGGS+YMW LAPGARL IT PASLL +DWAR +YCL   G 
Sbjct: 61  VGEASARGLRIAVRRAEDSRGGSRYMWQLAPGARLDITQPASLLAVDWARDNYCLIAGGI 120


>ref|YP_001238274.1| putative oxydoreductase [Bradyrhizobium sp. BTAi1]
 gb|ABQ34368.1| vanillate demethylase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 326

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 1   MRFIESWTPATLVATRDLTPSIREFLIKPENFDGAAYPVGSHINIAVTIDGRPDTRSYSL 60
           MRF ++W+PATLVATRDL P IREF+++P+ +  A YPVGSHI ++V I G+ D RSYSL
Sbjct: 1   MRFQDNWSPATLVATRDLAPGIREFILRPDGYACAPYPVGSHIKVSVFIAGQADVRSYSL 60

Query: 61  VGEPERTGYRIAVRRAEDSRGGSQYMWSLAPGARLTITLPASLLPIDWARRHYCLKRDGF 120
           VGE +  GYRIAVR AEDSRGGS+Y+WSL PGARL +T P SLL +DW R+HYCL   G 
Sbjct: 61  VGEADPRGYRIAVRFAEDSRGGSRYLWSLQPGARLDVTSPTSLLQVDWQRQHYCLVAGGI 120


>ref|YP_001203977.1| putative oxydoreductase [Bradyrhizobium sp. ORS 278]
 emb|CAL75740.1| putative Oxydoreductase [Bradyrhizobium sp. ORS 278]
          Length = 326

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 89/120 (74%)

Query: 1   MRFIESWTPATLVATRDLTPSIREFLIKPENFDGAAYPVGSHINIAVTIDGRPDTRSYSL 60
           MRF + WT ATLVATRDL   IREF+++P+ +  A YPVGSHI ++V I G+PD RSYSL
Sbjct: 1   MRFQDHWTTATLVATRDLASGIREFILRPDGYVCAPYPVGSHIKVSVLIGGQPDVRSYSL 60

Query: 61  VGEPERTGYRIAVRRAEDSRGGSQYMWSLAPGARLTITLPASLLPIDWARRHYCLKRDGF 120
           VGE +  GYRIAVR A+DSRGGS+Y+WSL PGARL +T P SLL + W   HYCL   G 
Sbjct: 61  VGEADPRGYRIAVRHADDSRGGSRYLWSLQPGARLDVTSPTSLLQVGWQYEHYCLVAGGI 120


>ref|YP_004108078.1| ferredoxin [Rhodopseudomonas palustris DX-1]
 gb|ADU43345.1| ferredoxin [Rhodopseudomonas palustris DX-1]
          Length = 330

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 86/120 (71%), Gaps = 1/120 (0%)

Query: 1   MRFIESWTPATLVATRDLTPSIREFLIKPENFDGAAYPVGSHINIAVTIDGRPDTRSYSL 60
           MRF E WT +T+V+TRDLTPSIRE +++P+       P GSHIN+AV IDGRPD RSYSL
Sbjct: 1   MRFAEQWTSSTVVSTRDLTPSIREIVLEPDTAVTTCAP-GSHINVAVLIDGRPDKRSYSL 59

Query: 61  VGEPERTGYRIAVRRAEDSRGGSQYMWSLAPGARLTITLPASLLPIDWARRHYCLKRDGF 120
           VG P+    RIAVR A DSRGGSQ MW+L PG R+ IT P SL  IDW+RR YCL   G 
Sbjct: 60  VGAPDHGRLRIAVRLAGDSRGGSQAMWALKPGQRIDITHPTSLFEIDWSRRSYCLIAGGI 119


>ref|YP_001993112.1| oxidoreductase FAD/NAD(P)-binding domain-containing protein
           [Rhodopseudomonas palustris TIE-1]
 gb|ACF02637.1| oxidoreductase FAD/NAD(P)-binding domain protein [Rhodopseudomonas
           palustris TIE-1]
          Length = 330

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)

Query: 1   MRFIESWTPATLVATRDLTPSIREFLIKPENFDGAAYPVGSHINIAVTIDGRPDTRSYSL 60
           MRF E WT +T+V+TRDLTPSIRE +++P+       P GSHIN+AV IDG+PD RSYSL
Sbjct: 1   MRFAEQWTSSTVVSTRDLTPSIREIVLEPDVAVTTCAP-GSHINVAVLIDGQPDKRSYSL 59

Query: 61  VGEPERTGYRIAVRRAEDSRGGSQYMWSLAPGARLTITLPASLLPIDWARRHYCLKRDGF 120
           VG PE+   RIAVR A DSRGGSQ MW+L PG R+ IT P SL  +DW+R+HY L   G 
Sbjct: 60  VGPPEQGRLRIAVRLAADSRGGSQTMWALKPGQRIDITHPTSLFELDWSRKHYALIAGGI 119