BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0233.0008.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769030.1| vanillate O-demethylase oxygenase subunit [Brad... 622 e-176 ref|YP_001238272.1| vanillate O-demethylase oxygenase, iron-sulf... 620 e-175 ref|YP_001203975.1| vanillate O-demethylase oxygenase, iron-sulf... 620 e-175 ref|YP_004108080.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopse... 588 e-166 ref|YP_485527.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palus... 588 e-166 >ref|NP_769030.1| vanillate O-demethylase oxygenase subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC47655.1| vanillate O-demethylase oxygenase subunit [Bradyrhizobium japonicum USDA 110] Length = 354 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 290/349 (83%), Positives = 316/349 (90%) Query: 1 MSHCFPTNVWYAAAWDAEVKQALLPRTICGKHVVMYRRANGEVAALEDACWHRLVPLSKG 60 M+ FP N WYAAAWDAEVK ALLPRTICGKHVVMYR+A+G VAALEDACWHRLVPLSKG Sbjct: 6 MTKPFPMNAWYAAAWDAEVKPALLPRTICGKHVVMYRKADGAVAALEDACWHRLVPLSKG 65 Query: 61 RLEGDSVVCGYHGLKFNAQGRCTFMPSQETINPSACVRAYPVVERDRFVWLWMGDPALAN 120 RLEGD+VVCGYHGLK+NAQGRCTFMPSQETINPSACVRAYPVVER R++WLWMGDPALA+ Sbjct: 66 RLEGDTVVCGYHGLKYNAQGRCTFMPSQETINPSACVRAYPVVERHRYIWLWMGDPALAD 125 Query: 121 PRLVPDMHWNDDSAWAGDGDTIHLKCDYRLVVDNLMDLTHETFVHGASIGNNAIAEAPFD 180 P LVPDMHWN D AWAGDG TI + CDYRLV+DNLMDLTHETFVHG+SIGN+A+AEAPFD Sbjct: 126 PALVPDMHWNHDPAWAGDGKTIRVNCDYRLVLDNLMDLTHETFVHGSSIGNDAVAEAPFD 185 Query: 181 VTHGEKTATVTRWMKGISAPPFWAKQLQKPGPVDRWQIIRFEAPCTINIDVGVAPAGTGA 240 VTHGEKT TVTRWM+ I PPFWAKQL KPG VDRWQIIRFEAPCTI IDVGVAP GTGA Sbjct: 186 VTHGEKTVTVTRWMRNIEPPPFWAKQLGKPGLVDRWQIIRFEAPCTIAIDVGVAPTGTGA 245 Query: 241 PEGNRSAGVNGIVLNTITPETETSCHYFWAFVRNYRLNEQRLTTELRQGVSGIFREDEVI 300 PEG+RS GVNG VLNTITPETE +CHYFWAFVRNY++ EQR+TTE+R+GVSGIF EDE+I Sbjct: 246 PEGDRSQGVNGFVLNTITPETEKTCHYFWAFVRNYQIGEQRITTEIREGVSGIFHEDELI 305 Query: 301 LEAQQRAIDENPDRVFYNLNIDAGAMWARRLIDRMIEAENPSQGQQAAE 349 LEAQQRA+DENPDRVFYNLNIDAGAMW R+LID+M+ EN Q QAAE Sbjct: 306 LEAQQRAMDENPDRVFYNLNIDAGAMWTRKLIDKMVAKENAPQHLQAAE 354 >ref|YP_001238272.1| vanillate O-demethylase oxygenase, iron-sulfur subunit [Bradyrhizobium sp. BTAi1] gb|ABQ34366.1| vanillate demethylase subunit A [Bradyrhizobium sp. BTAi1] Length = 347 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 286/341 (83%), Positives = 312/341 (91%) Query: 1 MSHCFPTNVWYAAAWDAEVKQALLPRTICGKHVVMYRRANGEVAALEDACWHRLVPLSKG 60 M+ FP N WYAAAWDAEVKQALLPRTICGKHVVMYR+A+G +AALEDACWHRLVPLSKG Sbjct: 1 MAASFPMNAWYAAAWDAEVKQALLPRTICGKHVVMYRKADGSIAALEDACWHRLVPLSKG 60 Query: 61 RLEGDSVVCGYHGLKFNAQGRCTFMPSQETINPSACVRAYPVVERDRFVWLWMGDPALAN 120 RLEGD+VVCGYHGLKF+ QGRCTFMPSQETINPSACVRAYP VER RF+WLWMGDPALA+ Sbjct: 61 RLEGDTVVCGYHGLKFSPQGRCTFMPSQETINPSACVRAYPAVERHRFIWLWMGDPALAD 120 Query: 121 PRLVPDMHWNDDSAWAGDGDTIHLKCDYRLVVDNLMDLTHETFVHGASIGNNAIAEAPFD 180 P +PDMHWN D AWAGDG TI +KCDYRLVVDNLMDLTHETFVHG+SIGN+A+AEAPFD Sbjct: 121 PATIPDMHWNHDPAWAGDGKTIQVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFD 180 Query: 181 VTHGEKTATVTRWMKGISAPPFWAKQLQKPGPVDRWQIIRFEAPCTINIDVGVAPAGTGA 240 VTHGE+TATVTRWM+GI PPFWAKQL KPG VDRWQIIRFEAPCT+ IDVGVAP GTGA Sbjct: 181 VTHGERTATVTRWMRGIEPPPFWAKQLGKPGLVDRWQIIRFEAPCTVTIDVGVAPTGTGA 240 Query: 241 PEGNRSAGVNGIVLNTITPETETSCHYFWAFVRNYRLNEQRLTTELRQGVSGIFREDEVI 300 PEG+RS GVNG+VLNTITPET+ +CHYFWAF RNY+L EQRLTTE+R+GVSGIFREDE+I Sbjct: 241 PEGDRSQGVNGMVLNTITPETDKTCHYFWAFARNYQLTEQRLTTEIREGVSGIFREDELI 300 Query: 301 LEAQQRAIDENPDRVFYNLNIDAGAMWARRLIDRMIEAENP 341 LEAQQRA+D NP RVFYNLNIDAGAMWARR+IDRMI E P Sbjct: 301 LEAQQRAMDANPGRVFYNLNIDAGAMWARRIIDRMIARETP 341 >ref|YP_001203975.1| vanillate O-demethylase oxygenase, iron-sulfur subunit [Bradyrhizobium sp. ORS 278] emb|CAL75738.1| vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (vanA-like) [Bradyrhizobium sp. ORS 278] Length = 347 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 288/349 (82%), Positives = 318/349 (91%), Gaps = 2/349 (0%) Query: 1 MSHCFPTNVWYAAAWDAEVKQALLPRTICGKHVVMYRRANGEVAALEDACWHRLVPLSKG 60 M+ FP N WYAAAWDAEVKQALLPRTICGKHVVMYR+A+G +AALEDACWHRLVPLSKG Sbjct: 1 MAASFPMNAWYAAAWDAEVKQALLPRTICGKHVVMYRKADGAIAALEDACWHRLVPLSKG 60 Query: 61 RLEGDSVVCGYHGLKFNAQGRCTFMPSQETINPSACVRAYPVVERDRFVWLWMGDPALAN 120 RLEGD+VVCGYHGLKF+ QGRCT+MPSQETINPSACVRAYP VER RF+WLWMGDPALA+ Sbjct: 61 RLEGDTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRAYPAVERHRFIWLWMGDPALAD 120 Query: 121 PRLVPDMHWNDDSAWAGDGDTIHLKCDYRLVVDNLMDLTHETFVHGASIGNNAIAEAPFD 180 P +PDMHWN D AWAGDG TI +KCDYRLVVDNLMDLTHETFVHG+SIGN+A+AEAPFD Sbjct: 121 PATIPDMHWNHDPAWAGDGKTIQVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFD 180 Query: 181 VTHGEKTATVTRWMKGISAPPFWAKQLQKPGPVDRWQIIRFEAPCTINIDVGVAPAGTGA 240 VTHGE+TATVTRWM+GI PPFWAKQL KPG VDRWQIIRFE+PCT+ IDVGVAP GTGA Sbjct: 181 VTHGERTATVTRWMRGIEPPPFWAKQLGKPGLVDRWQIIRFESPCTVTIDVGVAPTGTGA 240 Query: 241 PEGNRSAGVNGIVLNTITPETETSCHYFWAFVRNYRLNEQRLTTELRQGVSGIFREDEVI 300 PEG+RS GVNG+VLNTITPET+ +CHYFWAF RNY+L+EQRLTTE+R+GVSGIFREDE I Sbjct: 241 PEGDRSQGVNGMVLNTITPETDKTCHYFWAFARNYKLSEQRLTTEIREGVSGIFREDEFI 300 Query: 301 LEAQQRAIDENPDRVFYNLNIDAGAMWARRLIDRMIEAENPSQGQQAAE 349 LEAQQRA+DENP RVFYNLNIDAGAMWARR+IDRMI E P ++AAE Sbjct: 301 LEAQQRAMDENPGRVFYNLNIDAGAMWARRIIDRMIARETPL--REAAE 347 >ref|YP_004108080.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] gb|ADU43347.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] Length = 347 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 284/343 (82%), Positives = 311/343 (90%) Query: 5 FPTNVWYAAAWDAEVKQALLPRTICGKHVVMYRRANGEVAALEDACWHRLVPLSKGRLEG 64 FP N WYAAAWDA++K AL PRTICGKHVVMYR+A+G VAALEDACWHRLVPLSKGRLEG Sbjct: 4 FPLNAWYAAAWDADIKHALFPRTICGKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEG 63 Query: 65 DSVVCGYHGLKFNAQGRCTFMPSQETINPSACVRAYPVVERDRFVWLWMGDPALANPRLV 124 D+VVCGYHGLKFN QGRCTFMPSQETINPSACVR+YPVVER RFVWLWMGDP LA+P LV Sbjct: 64 DTVVCGYHGLKFNPQGRCTFMPSQETINPSACVRSYPVVERHRFVWLWMGDPVLADPALV 123 Query: 125 PDMHWNDDSAWAGDGDTIHLKCDYRLVVDNLMDLTHETFVHGASIGNNAIAEAPFDVTHG 184 PDMHWNDD AWAGDG TIH KCD+RLVVDNLMDLTHET+VHG+SIGN A+AEAPFDVTHG Sbjct: 124 PDMHWNDDPAWAGDGKTIHAKCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDVTHG 183 Query: 185 EKTATVTRWMKGISAPPFWAKQLQKPGPVDRWQIIRFEAPCTINIDVGVAPAGTGAPEGN 244 ++T TVTRWM GI PPFWA QL KPG VDRWQIIRFEAP T+ IDVGVAPAGTGAPEG+ Sbjct: 184 DRTVTVTRWMHGIEPPPFWAAQLGKPGLVDRWQIIRFEAPGTVTIDVGVAPAGTGAPEGD 243 Query: 245 RSAGVNGIVLNTITPETETSCHYFWAFVRNYRLNEQRLTTELRQGVSGIFREDEVILEAQ 304 RS GVNG VLNT+TPET+T+CHYFWAFVRNYRL +QRLTTE+R+GVSGIFREDE+ILEAQ Sbjct: 244 RSQGVNGYVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFREDEIILEAQ 303 Query: 305 QRAIDENPDRVFYNLNIDAGAMWARRLIDRMIEAENPSQGQQA 347 QRA+ ENPDRVFYNLNIDAGAMW+R+LIDRM+ EN + Q A Sbjct: 304 QRAMLENPDRVFYNLNIDAGAMWSRKLIDRMVAQENAPKLQAA 346 >ref|YP_485527.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] gb|ABD06616.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] Length = 347 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 281/343 (81%), Positives = 313/343 (91%) Query: 5 FPTNVWYAAAWDAEVKQALLPRTICGKHVVMYRRANGEVAALEDACWHRLVPLSKGRLEG 64 FP N WYAAAWDA++K AL PRTIC KHVVMYR+A+G VAALEDACWHRLVPLSKGRLEG Sbjct: 4 FPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEG 63 Query: 65 DSVVCGYHGLKFNAQGRCTFMPSQETINPSACVRAYPVVERDRFVWLWMGDPALANPRLV 124 D+VVCGYHGLKF+ QGRCT+MPSQETINPSACVR+YPVVER RFVWLWMGDPALA+P LV Sbjct: 64 DTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADPALV 123 Query: 125 PDMHWNDDSAWAGDGDTIHLKCDYRLVVDNLMDLTHETFVHGASIGNNAIAEAPFDVTHG 184 PDMHWNDD AWAGDG TIH +CD+RLVVDNLMDLTHET+VHG+SIGN A+AEAPFDVTHG Sbjct: 124 PDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDVTHG 183 Query: 185 EKTATVTRWMKGISAPPFWAKQLQKPGPVDRWQIIRFEAPCTINIDVGVAPAGTGAPEGN 244 ++T TVTRWM+GI APPFWA QL+KPGPVDRWQIIRFEAP T+ IDVGVAPAG+GAPEG+ Sbjct: 184 DRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAPEGD 243 Query: 245 RSAGVNGIVLNTITPETETSCHYFWAFVRNYRLNEQRLTTELRQGVSGIFREDEVILEAQ 304 RS GVNG VLNT+TPET+T+CHYFWAFVRNYRL +QRLTTE+R+GVSGIF EDE+ILEAQ Sbjct: 244 RSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIILEAQ 303 Query: 305 QRAIDENPDRVFYNLNIDAGAMWARRLIDRMIEAENPSQGQQA 347 QRAI ENPDRVFYNLNIDAGAMW+R+LIDRM+ E + Q A Sbjct: 304 QRAISENPDRVFYNLNIDAGAMWSRKLIDRMVAKEAAPRLQAA 346