BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0233.0004.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768354.1| two component regulator [Bradyrhizobium japonic... 268 4e-70 gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizo... 216 1e-54 ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyp... 191 3e-47 ref|YP_003695646.1| LuxR family transcriptional regulator [Stark... 188 3e-46 ref|NP_771414.1| two-component response regulator [Bradyrhizobiu... 188 3e-46 >ref|NP_768354.1| two component regulator [Bradyrhizobium japonicum USDA 110] sp|P15940.1|NODW_BRAJA RecName: Full=Nodulation protein W gb|AAG60697.1|AF322012_2 NodW [Bradyrhizobium japonicum] gb|AAA26232.1| nodulation protein (nodW; gtg start) [Bradyrhizobium japonicum] dbj|BAC46979.1| two component regulator [Bradyrhizobium japonicum USDA 110] Length = 227 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 143/157 (91%) Query: 4 RSNSQREGSRAEASANAIVFIVEDDVSMRRSLTNLFQSVGLDVVAFGSAREMLQSKLPDV 63 R + + +G EAS AIVF+VEDD+SMRRSLTNLF+SVGL+VVAFGSAREMLQS +PDV Sbjct: 4 RFDWRGQGGHTEASTKAIVFVVEDDISMRRSLTNLFRSVGLEVVAFGSAREMLQSTMPDV 63 Query: 64 VSCLVLDVRLPGLSGLEFQTELAKSNIHIPIIFITGHGDIPMSVRAMKGGAVDFLTKPFR 123 SCLVLDVRLPGLSGL++QTELA+ NIHIPIIFITGHGDIPM+VRAMKGGAVDFL+KPFR Sbjct: 64 TSCLVLDVRLPGLSGLDYQTELARLNIHIPIIFITGHGDIPMTVRAMKGGAVDFLSKPFR 123 Query: 124 DQELLDAVVAATERDRKRREAQQIVANLQSRFESSSP 160 DQELLDAVVAATERDRKRREAQ+ VANL+S FE+ SP Sbjct: 124 DQELLDAVVAATERDRKRREAQRTVANLKSLFETLSP 160 >gb|AAK00179.1|AF222754_7 probable nodulation protein [Bradyrhizobium sp. WM9] Length = 227 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/161 (65%), Positives = 128/161 (79%), Gaps = 1/161 (0%) Query: 1 VNERSNSQREGSRAEA-SANAIVFIVEDDVSMRRSLTNLFQSVGLDVVAFGSAREMLQSK 59 + +RS +RE + A V +V+DD+SMR SL NLF+S+GLDVVA+GSA+E+LQS+ Sbjct: 1 MTKRSEPRREAANVVGPEARPSVLVVDDDISMRDSLVNLFRSIGLDVVAYGSAQELLQSE 60 Query: 60 LPDVVSCLVLDVRLPGLSGLEFQTELAKSNIHIPIIFITGHGDIPMSVRAMKGGAVDFLT 119 LPDV SCLVLD+RLPG SGLE Q+ELAK IHIPIIFIT HGDIPM+V+AMK GA+DFL+ Sbjct: 61 LPDVPSCLVLDIRLPGSSGLELQSELAKLKIHIPIIFITAHGDIPMTVKAMKSGAIDFLS 120 Query: 120 KPFRDQELLDAVVAATERDRKRREAQQIVANLQSRFESSSP 160 KPFRDQELLD VVAA E+DR RR ++V LQS FE+ SP Sbjct: 121 KPFRDQELLDGVVAAIEQDRNRRGVDKVVRRLQSLFEALSP 161 >ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] emb|CCB64383.1| Transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] Length = 216 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 86/142 (60%), Positives = 118/142 (83%) Query: 16 ASANAIVFIVEDDVSMRRSLTNLFQSVGLDVVAFGSAREMLQSKLPDVVSCLVLDVRLPG 75 ++A V++V+DD ++R +L++LF+SVGL V FGSA E L+ KLP++ SCLVLD+RLPG Sbjct: 10 STAGRAVYVVDDDPALRDALSSLFRSVGLQVEVFGSAAEFLEKKLPEIPSCLVLDIRLPG 69 Query: 76 LSGLEFQTELAKSNIHIPIIFITGHGDIPMSVRAMKGGAVDFLTKPFRDQELLDAVVAAT 135 +SGL+FQ +LAK+ I +P+IF+TGHGDIPMSVRAMK GA+DFLTKPFRDQ++LDAV +A Sbjct: 70 VSGLDFQAQLAKAGIRMPVIFMTGHGDIPMSVRAMKAGAIDFLTKPFRDQDMLDAVFSAL 129 Query: 136 ERDRKRREAQQIVANLQSRFES 157 E DRK+ E+ Q +A+L + +ES Sbjct: 130 ETDRKQLESDQSIADLSAHYES 151 >ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 218 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 88/155 (56%), Positives = 123/155 (79%), Gaps = 1/155 (0%) Query: 7 SQREGSRAEAS-ANAIVFIVEDDVSMRRSLTNLFQSVGLDVVAFGSAREMLQSKLPDVVS 65 +QR R A ++ +V +V+DD ++R +L++LF+SVGL V F SA E+L +KLP+V Sbjct: 2 TQRPQPRPSAPPSDPLVIVVDDDPALREALSSLFRSVGLQVELFASAAELLAAKLPEVAR 61 Query: 66 CLVLDVRLPGLSGLEFQTELAKSNIHIPIIFITGHGDIPMSVRAMKGGAVDFLTKPFRDQ 125 CLVLD+RLPG+SGL+FQ +LA+S I +P IF+TGHGDIPM+VRAMK GAVDFLTKPFRDQ Sbjct: 62 CLVLDIRLPGVSGLDFQAQLARSEIEMPTIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQ 121 Query: 126 ELLDAVVAATERDRKRREAQQIVANLQSRFESSSP 160 ++LDAV +A DR+RREA++ V+ +Q+ +E+ +P Sbjct: 122 DMLDAVASAIRLDRERREARKAVSGVQNLYETLTP 156 >ref|NP_771414.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] emb|CAA80352.1| NwsB [Bradyrhizobium japonicum] dbj|BAC50039.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/145 (68%), Positives = 124/145 (85%), Gaps = 1/145 (0%) Query: 13 RAEASA-NAIVFIVEDDVSMRRSLTNLFQSVGLDVVAFGSAREMLQSKLPDVVSCLVLDV 71 +A+ASA + IV IV+DD SMRR+LTNLFQSVGL V AF SA E+++++ P V SCLVLD+ Sbjct: 7 QAQASAGDPIVRIVDDDPSMRRALTNLFQSVGLKVEAFSSAAEIMEAQPPAVPSCLVLDI 66 Query: 72 RLPGLSGLEFQTELAKSNIHIPIIFITGHGDIPMSVRAMKGGAVDFLTKPFRDQELLDAV 131 RLPG SGL+ Q +LAK+NIH PIIFITGHGDIPM+VRAMK GAVDFLTKP RDQ++LDAV Sbjct: 67 RLPGSSGLDLQADLAKANIHTPIIFITGHGDIPMTVRAMKSGAVDFLTKPVRDQDMLDAV 126 Query: 132 VAATERDRKRREAQQIVANLQSRFE 156 AA ERDR+RR+A++ ++ ++SRFE Sbjct: 127 QAAIERDRRRRDAEKSISGVRSRFE 151