BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0003.p (492 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004612805.1| AMP-dependent synthetase and ligase [Mesorhi... 603 e-170 ref|YP_004143128.1| AMP-dependent synthetase and ligase [Mesorhi... 600 e-169 ref|YP_004303589.1| AMP-dependent synthetase and ligase [Polymor... 597 e-168 ref|NP_102388.1| acid-CoA ligase [Mesorhizobium loti MAFF303099]... 595 e-168 ref|ZP_05079950.1| benzoate-coenzyme A ligase [Rhodobacterales b... 593 e-167 >ref|YP_004612805.1| AMP-dependent synthetase and ligase [Mesorhizobium opportunistum WSM2075] gb|AEH88711.1| AMP-dependent synthetase and ligase [Mesorhizobium opportunistum WSM2075] Length = 541 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 300/415 (72%), Positives = 337/415 (81%), Gaps = 13/415 (3%) Query: 36 LGPSGHVDDFARRNLPPSAQWPQLLLDRPEFQYPDYLNAAVELTDRIVEQGMGDRIALIG 95 LGPS H+D F R +LPP QWP +LLD F YP++LNA VELTDR+V++G+GD ALIG Sbjct: 2 LGPSAHIDTFTRDHLPPPEQWPDILLD--GFDYPEHLNAGVELTDRLVQKGLGDHTALIG 59 Query: 96 NGRQRTYKELTDWSNRLAHALVENYGVKPGNRVLIRSGNNPALVAAWLAATKAGAVVVNT 155 NGR+RTYKEL+DW+NRLAHALVENYGVKPGNRVLIRS NNPA+VA WLAATK GAVVVNT Sbjct: 60 NGRRRTYKELSDWTNRLAHALVENYGVKPGNRVLIRSANNPAMVACWLAATKVGAVVVNT 119 Query: 156 MPMLRAGELAKIVDKAEISLALTDSRIADELVACAKTSKFLKQVVNFDGTQNHDAELDRI 215 MPMLRAGEL+KIVDKAE+++AL D+R+ DE+ ACAK S FLKQV+ FDGT NHDAELDR Sbjct: 120 MPMLRAGELSKIVDKAEVTIALCDTRLMDEMTACAKDSAFLKQVIGFDGTANHDAELDRA 179 Query: 216 ALNKPVKFDAVKTGRDDVALLGFTSGTTGEPKATMHFHRDLLIIADGYAREVLKVTPDDV 275 AL+KPV F AV TGRDDVALLGFTSGTTG PKATMHFHRDLLIIAD YARE+L+VTPDD+ Sbjct: 180 ALDKPVTFTAVNTGRDDVALLGFTSGTTGVPKATMHFHRDLLIIADAYAREILQVTPDDI 239 Query: 276 FVGSPPLAFTFGLGGLAIFPLRFGATATLLENAAPSEMIRIIETYKATICFTAPTAYRAM 335 FVGSPPLAFTFGLGGLAIFPLRFGA ATLLE A P MI IIETYKAT+ FTAPTAYRAM Sbjct: 240 FVGSPPLAFTFGLGGLAIFPLRFGAAATLLEQATPPNMIHIIETYKATVSFTAPTAYRAM 299 Query: 336 MAAMDKGADLSSLRLAVSAGETLPTPVFESWTKKTGKPILDGIGSTELLHIFITNRTGSA 395 + AMD+GADLSSLR+AVSAGETLP PVFE WTKKTGKPILDGIG+TE+LHIFI+NR Sbjct: 300 LKAMDEGADLSSLRVAVSAGETLPAPVFEEWTKKTGKPILDGIGATEMLHIFISNRFDD- 358 Query: 396 VGGALVPIALGSDTNGXRCR---DRRRSTGR-PAGRRSVRGEEPVRCAGSSDPRR 446 + P + G G R D R R GR +VRG P C +D R+ Sbjct: 359 ----MKPASTGKPVGGYEARIVDDEMREVPRGTTGRLAVRG--PTGCRYMADDRQ 407 >ref|YP_004143128.1| AMP-dependent synthetase and ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13078.1| AMP-dependent synthetase and ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 541 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 303/415 (73%), Positives = 337/415 (81%), Gaps = 13/415 (3%) Query: 36 LGPSGHVDDFARRNLPPSAQWPQLLLDRPEFQYPDYLNAAVELTDRIVEQGMGDRIALIG 95 LGPS H+D F R +LPP QWP +LLD F YP+ LNA VELTDR+VE+G+GDR ALIG Sbjct: 2 LGPSAHIDTFTRDHLPPPEQWPDILLD--GFDYPERLNAGVELTDRLVEKGLGDRTALIG 59 Query: 96 NGRQRTYKELTDWSNRLAHALVENYGVKPGNRVLIRSGNNPALVAAWLAATKAGAVVVNT 155 NGR+RTYKEL+DW+NRLAHALVENYGV+PGNRVLIRS NNPA+VA WLAATK GAVVVNT Sbjct: 60 NGRRRTYKELSDWTNRLAHALVENYGVEPGNRVLIRSANNPAMVACWLAATKVGAVVVNT 119 Query: 156 MPMLRAGELAKIVDKAEISLALTDSRIADELVACAKTSKFLKQVVNFDGTQNHDAELDRI 215 MPMLRAGELAKIVDKAEI++AL D+R+ DE+ ACAK S FLKQV+ FDGT NHDAELDR Sbjct: 120 MPMLRAGELAKIVDKAEITVALCDTRLMDEMTACAKDSTFLKQVIGFDGTANHDAELDRA 179 Query: 216 ALNKPVKFDAVKTGRDDVALLGFTSGTTGEPKATMHFHRDLLIIADGYAREVLKVTPDDV 275 AL+KPV F AV TG DDVALLGFTSGTTG PKATMHFHRDLLIIAD YARE+L+VTPDD+ Sbjct: 180 ALDKPVTFTAVNTGCDDVALLGFTSGTTGVPKATMHFHRDLLIIADAYAREILEVTPDDI 239 Query: 276 FVGSPPLAFTFGLGGLAIFPLRFGATATLLENAAPSEMIRIIETYKATICFTAPTAYRAM 335 FVGSPPLAFTFGLGGLAIFPLRFGA ATLLE A P MI IIETYKATI FTAPTAYRAM Sbjct: 240 FVGSPPLAFTFGLGGLAIFPLRFGAAATLLEQATPPNMIHIIETYKATISFTAPTAYRAM 299 Query: 336 MAAMDKGADLSSLRLAVSAGETLPTPVFESWTKKTGKPILDGIGSTELLHIFITNRTGSA 395 + AM +GADLSSLR+AVSAGETLP PVFE WT+KTGKPILDGIG+TE+LHIFI+NR G Sbjct: 300 LKAMYEGADLSSLRVAVSAGETLPAPVFEEWTQKTGKPILDGIGATEMLHIFISNRFGD- 358 Query: 396 VGGALVPIALGSDTNGXRCR---DRRRSTGRPA-GRRSVRGEEPVRCAGSSDPRR 446 + P + G G R D R R A GR +VRG P C +D R+ Sbjct: 359 ----MKPASTGKPVGGYEARIVDDEMREVPRGATGRLAVRG--PTGCRYMADIRQ 407 >ref|YP_004303589.1| AMP-dependent synthetase and ligase [Polymorphum gilvum SL003B-26A1] gb|ADZ70287.1| AMP-dependent synthetase and ligase [Polymorphum gilvum SL003B-26A1] Length = 544 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 301/418 (72%), Positives = 336/418 (80%), Gaps = 13/418 (3%) Query: 33 FPELGPSGHVDDFARRNLPPSAQWPQLLLDRPEFQYPDYLNAAVELTDRIVEQGMGDRIA 92 P LGPS HVD F R NLPP AQWP + LD F YPD+LNAAVELTDR+VE+G GD +A Sbjct: 4 LPPLGPSAHVDTFTRDNLPPFAQWPAMPLD--GFDYPDHLNAAVELTDRMVEKGFGDHVA 61 Query: 93 LIGNGRQRTYKELTDWSNRLAHALVENYGVKPGNRVLIRSGNNPALVAAWLAATKAGAVV 152 LIGNGRQRTYKEL+DW+NR+AHALVE+YGVKPG RVLIRS NNPA+VA WLAATKAGAVV Sbjct: 62 LIGNGRQRTYKELSDWTNRIAHALVEDYGVKPGERVLIRSANNPAMVACWLAATKAGAVV 121 Query: 153 VNTMPMLRAGELAKIVDKAEISLALTDSRIADELVACAKTSKFLKQVVNFDGTQNHDAEL 212 VNTMPMLRAGEL+KIVDKAEI LAL D+R+ DELVACAK S FLK+V+ FDGT NHDAEL Sbjct: 122 VNTMPMLRAGELSKIVDKAEIGLALCDTRLMDELVACAKGSAFLKKVIGFDGTANHDAEL 181 Query: 213 DRIALNKPVKFDAVKTGRDDVALLGFTSGTTGEPKATMHFHRDLLIIADGYAREVLKVTP 272 DRIAL KPV+F+AV+TGRDDVALLGFTSGTTG PKATMHFHRD+LIIADGYAREVL VTP Sbjct: 182 DRIALGKPVRFEAVRTGRDDVALLGFTSGTTGVPKATMHFHRDILIIADGYAREVLGVTP 241 Query: 273 DDVFVGSPPLAFTFGLGGLAIFPLRFGATATLLENAAPSEMIRIIETYKATICFTAPTAY 332 DDVFVGSPPLAFTFGLGGLA+FPLRFGA A LLENA P +I II+ Y+ATICFTAPTAY Sbjct: 242 DDVFVGSPPLAFTFGLGGLAVFPLRFGAAAALLENATPPNLIEIIQKYRATICFTAPTAY 301 Query: 333 RAMMAAMDKGADLSSLRLAVSAGETLPTPVFESWTKKTGKPILDGIGSTELLHIFITNRT 392 R M+ AMD+GADLSSLR AVSAGETLP PV+E W +TGKP+LDGIG+TE+LHIFIT+R Sbjct: 302 RVMLKAMDEGADLSSLRAAVSAGETLPAPVYEEWMARTGKPMLDGIGATEMLHIFITSRF 361 Query: 393 GSAVGGALVPIALGSDTNGXRCR----DRRRSTGRPAGRRSVRGEEPVRCAGSSDPRR 446 G + P G G R D GR +VRG P C +D R+ Sbjct: 362 GDS-----QPACTGRPVAGYEARIVGDDGAELPRGEVGRLAVRG--PTGCRYLADERQ 412 >ref|NP_102388.1| acid-CoA ligase [Mesorhizobium loti MAFF303099] dbj|BAB48174.1| probable acid-CoA ligase [Mesorhizobium loti MAFF303099] Length = 541 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/417 (71%), Positives = 332/417 (79%), Gaps = 13/417 (3%) Query: 36 LGPSGHVDDFARRNLPPSAQWPQLLLDRPEFQYPDYLNAAVELTDRIVEQGMGDRIALIG 95 LGPS H+D F R +LPP QWP LLD F YP++LN VELTDR+VE+G+GD ALIG Sbjct: 2 LGPSAHIDTFTRDHLPPPDQWPDFLLD--GFDYPEHLNVGVELTDRLVEKGLGDHTALIG 59 Query: 96 NGRQRTYKELTDWSNRLAHALVENYGVKPGNRVLIRSGNNPALVAAWLAATKAGAVVVNT 155 NGR+RTYKEL+DW+NRLAHALVENY VKPGNRVLIRS NNPA+VA WLAATK GAVVVNT Sbjct: 60 NGRRRTYKELSDWTNRLAHALVENYDVKPGNRVLIRSANNPAMVACWLAATKVGAVVVNT 119 Query: 156 MPMLRAGELAKIVDKAEISLALTDSRIADELVACAKTSKFLKQVVNFDGTQNHDAELDRI 215 MPMLR GEL KIVDKAEI++AL D+R+ DE+ ACAK S FLKQV+ FDGT NHDAELDR Sbjct: 120 MPMLRTGELTKIVDKAEITIALCDTRLMDEMTACAKDSTFLKQVIGFDGTANHDAELDRA 179 Query: 216 ALNKPVKFDAVKTGRDDVALLGFTSGTTGEPKATMHFHRDLLIIADGYAREVLKVTPDDV 275 AL+KPV F AV TGRDDVALLGFTSGTTG PKATMHFHRDLLIIAD YARE+L+VTPDD+ Sbjct: 180 ALDKPVTFTAVNTGRDDVALLGFTSGTTGVPKATMHFHRDLLIIADAYAREILQVTPDDI 239 Query: 276 FVGSPPLAFTFGLGGLAIFPLRFGATATLLENAAPSEMIRIIETYKATICFTAPTAYRAM 335 FVGSPPLAFTFGLGGLAIFPLRFGA ATLLE A P MI IIETYKATI FTAPTAYRAM Sbjct: 240 FVGSPPLAFTFGLGGLAIFPLRFGAAATLLEQATPPNMIHIIETYKATISFTAPTAYRAM 299 Query: 336 MAAMDKGADLSSLRLAVSAGETLPTPVFESWTKKTGKPILDGIGSTELLHIFITNRTGSA 395 + AMD+GADLSSLR+AVSAGETLP PVFE WT+KTGKPILDGIG+TE+LHIFI+NR Sbjct: 300 LKAMDEGADLSSLRVAVSAGETLPAPVFEEWTEKTGKPILDGIGATEMLHIFISNRFDDR 359 Query: 396 VGGALVPIALGSDTNGXRCR---DRRRSTGR-PAGRRSVRGEEPVRCAGSSDPRRLE 448 P + G G R D R R GR +VRG P C +D R+ E Sbjct: 360 -----KPASTGKPVGGYEARIVDDAMREVPRGETGRLAVRG--PTGCRYMADDRQKE 409 >ref|ZP_05079950.1| benzoate-coenzyme A ligase [Rhodobacterales bacterium Y4I] gb|EDZ47929.1| benzoate-coenzyme A ligase [Rhodobacterales bacterium Y4I] Length = 537 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 335/419 (79%), Gaps = 21/419 (5%) Query: 36 LGPSGHVDDFARRNLPPSAQWPQLLLDRPEFQYPDYLNAAVELTDRIVEQGMGDRIALIG 95 LGP+ HVD FAR NLPP QWP+ LL+ F+YP+YLNAAVELTD +VE+G GDR ALIG Sbjct: 2 LGPTAHVDTFARDNLPPLDQWPEFLLEG--FEYPEYLNAAVELTDAMVEKGFGDRTALIG 59 Query: 96 NGRQRTYKELTDWSNRLAHALVENYGVKPGNRVLIRSGNNPALVAAWLAATKAGAVVVNT 155 NGR RTYKEL DW+NRLAH L E+ GVKPGNRVLIRS NNPA+VA WLAATKAGAVV+NT Sbjct: 60 NGRYRTYKELADWTNRLAHVLTEDLGVKPGNRVLIRSANNPAMVACWLAATKAGAVVINT 119 Query: 156 MPMLRAGELAKIVDKAEISLALTDSRIADELVACAKTSKFLKQVVNFDGTQNHDAELDRI 215 MPMLR GELAKIVDKAE+S AL D+R+ DELVACAK S FLK VV FDGT NHDAELDR+ Sbjct: 120 MPMLRKGELAKIVDKAEVSHALCDTRLKDELVACAKDSTFLKTVVGFDGTSNHDAELDRL 179 Query: 216 ALNKPVKFDAVKTGRDDVALLGFTSGTTGEPKATMHFHRDLLIIADGYAREVLKVTPDDV 275 AL KPV + AVKTGRDDVALLGFTSGTTG PKATMHFHRDLLIIADGYAREVL V P+DV Sbjct: 180 ALEKPVTYQAVKTGRDDVALLGFTSGTTGSPKATMHFHRDLLIIADGYAREVLDVQPEDV 239 Query: 276 FVGSPPLAFTFGLGGLAIFPLRFGATATLLENAAPSEMIRIIETYKATICFTAPTAYRAM 335 FVGSPPLAFTFGLGGLAIFPLRFGA ATLLENA+P +I IIE YKAT+CFTAPTAYR M Sbjct: 240 FVGSPPLAFTFGLGGLAIFPLRFGAAATLLENASPPNLIEIIEKYKATVCFTAPTAYRVM 299 Query: 336 MAAMDKGADLSSLRLAVSAGETLPTPVFESWTKKTGKPILDGIGSTELLHIFITNR---- 391 + AMD+GADLSSLR AVSAGETLP PV++ W +KTGKP+LDGIG+TELLHIFITNR Sbjct: 300 LRAMDEGADLSSLRAAVSAGETLPAPVYQEWMEKTGKPMLDGIGATELLHIFITNRFSDH 359 Query: 392 ----TGSAVGGALVPIALGSDTNGXRCRDRRRSTGRPAGRRSVRGEEPVRCAGSSDPRR 446 TG V G V + L +D N + AGR +V+G P C +D R+ Sbjct: 360 RPACTGKPVRGYQVKV-LDADGN--------EAPHGEAGRLAVKG--PTGCRYLADSRQ 407