BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0011.p (879 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773413.1| ATP-dependent DNA ligase [Bradyrhizobium japoni... 1375 0.0 ref|YP_001207704.1| ATP-dependent DNA ligase [Bradyrhizobium sp.... 1331 0.0 ref|YP_001242153.1| ATP-dependent DNA ligase [Bradyrhizobium sp.... 1323 0.0 gb|ABD89220.1| ATP dependent DNA ligase [Rhodopseudomonas palust... 1295 0.0 ref|YP_533539.2| ATP-dependent DNA ligase [Rhodopseudomonas palu... 1295 0.0 >ref|NP_773413.1| ATP-dependent DNA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC52038.1| bll6773 [Bradyrhizobium japonicum USDA 110] Length = 892 Score = 1375 bits (3560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 677/894 (75%), Positives = 760/894 (85%), Gaps = 22/894 (2%) Query: 3 LRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWAV 62 LR LSTYR+KRDFEKT EPSG+ VA SKQRRFVIQKHDA+RLHYD RLEFDGVFKSWAV Sbjct: 2 LRKLSTYRQKRDFEKTPEPSGEAAVASSKQRRFVIQKHDASRLHYDFRLEFDGVFKSWAV 61 Query: 63 TRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGFRK 122 T+GPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTV LWDRGTWE+DDPERGF+K Sbjct: 62 TKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWEADDPERGFKK 121 Query: 123 GDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSVAS 182 GDLKFTL G+KLHGSWVLVRM+ DR GGKRTNWLLIKHRDEYA +G E+IL ED+SVAS Sbjct: 122 GDLKFTLHGEKLHGSWVLVRMRNDRDGGKRTNWLLIKHRDEYAREG--EDILAEDKSVAS 179 Query: 183 GRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKERLKVAR 242 GR+MAQIA GKGRAPKPFMLAKG + KADAVWQSN + + RT APAP+ LK + Sbjct: 180 GRAMAQIAEGKGRAPKPFMLAKG-ARGKADAVWQSNR--VEETKGRTVAPAPRAALKAGK 236 Query: 243 QAK------------PKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQLRVED 290 K V++MPDFVAPQLC VE PP G GWCHEIKFDGYRVQLR+ED Sbjct: 237 TVNKAAKKSATAATNAKTVADMPDFVAPQLCTPVERPPAGDGWCHEIKFDGYRVQLRIED 296 Query: 291 GEAVLKTRKGLDWSGKFGAIVKEAEKLPDALIDGEIVALDKNGTPHFSTLQAALSDGQTD 350 G+A LKTRKGLDW+ KF +I KEA LP+A+IDGEIVALD NG P+FS+LQAALSDG+T+ Sbjct: 297 GKATLKTRKGLDWTDKFASIAKEANSLPEAMIDGEIVALDHNGAPNFSSLQAALSDGKTE 356 Query: 351 RLIFYAFDLLFAGTEDLRPLPLIERKARLKKLL-AVRKNNPLIRYVEHFEESGETVLDSA 409 LIF+AFDLLFA D R LPL ERK+RLK+LL A ++ + IRYVEHFE G+ VL SA Sbjct: 357 DLIFFAFDLLFAEGRDYRRLPLRERKSRLKELLEAQKRKSNQIRYVEHFESGGDAVLQSA 416 Query: 410 RKLDLEGIVSKRLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAGVYRGDH 469 KL+LEG+VSK+LD PYRSGR++ WTKAK RAGHEVV+GGWKTTNGKFRSLMAGV+RGDH Sbjct: 417 CKLELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDH 476 Query: 470 LAFVGIVGTGFGQDAVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEFAG 529 L FVG+VGTGFG D V+RIMP+LKA EA SPF GK+APKKTRDVHWLKPELVAEIEFAG Sbjct: 477 LVFVGMVGTGFGADTVKRIMPSLKAMEAKDSPFSGKNAPKKTRDVHWLKPELVAEIEFAG 536 Query: 530 WTDAGNIRQAAFKGLRQDKPAHEVVAERPVVTKVVKPMAKGVAKKGTGK----ASSEVMG 585 +T GNIRQAAFKGLRQDKPA EV AE P T++ +P A +GK ++EVMG Sbjct: 537 FTADGNIRQAAFKGLRQDKPAEEVEAETPADTELARPSAGKRVPAKSGKKKDAGAAEVMG 596 Query: 586 VVISHPDKALWPDAGDGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRAPDGIKGETFF 645 VVIS PDK LWPD GDGE VTKLDLA YFEAVG WMI +LKGRPCSI+RAPDGI GETFF Sbjct: 597 VVISKPDKELWPDGGDGEGVTKLDLARYFEAVGGWMIEHLKGRPCSILRAPDGIGGETFF 656 Query: 646 QRHAMAGTSKLLKLAKVSGDRKPYLQIDQVEGLAAVAQAGGLELHPWNCAPDAYDTPGRL 705 QRHAM GTS LL+LAKVSGDRKPYLQID+VEGLAAVAQ GGLELHPWNCAPDAYDTPGRL Sbjct: 657 QRHAMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPDAYDTPGRL 716 Query: 706 VFDLDPAPDVAFADVIDAAKDMRQRLTAVGLESFCKTTGGKGLHVVAPLLAGSRDKVTWK 765 VFDLDPAPDV FADV++AAK MRQRLT VG+ESFCKTTGGKGLHVV PLL G+RDKV+WK Sbjct: 717 VFDLDPAPDVGFADVVEAAKQMRQRLTDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWK 776 Query: 766 EAKAFAQAVCQWMAQDDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRARPGAT 825 EAKAFAQ +C+WMA D+PERYL+NMSK R GKIFLDYLRNDR++TAVA LSPRAR GAT Sbjct: 777 EAKAFAQGICRWMADDEPERYLLNMSKKLRNGKIFLDYLRNDRLATAVAPLSPRARDGAT 836 Query: 826 VSMPLTWPQLRGDLDPKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKRLAAQ 879 VSMP+TW Q++GDLDPK++T+RTVP LLA++KAW+GY+DAA+SIK+AMK+LA + Sbjct: 837 VSMPVTWAQVKGDLDPKRYTVRTVPGLLARSKAWEGYDDAAASIKAAMKKLAGK 890 >ref|YP_001207704.1| ATP-dependent DNA ligase [Bradyrhizobium sp. ORS 278] emb|CAL79487.1| putative ATP-dependent DNA ligase [Bradyrhizobium sp. ORS 278] Length = 904 Score = 1331 bits (3445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/901 (72%), Positives = 744/901 (82%), Gaps = 26/901 (2%) Query: 1 VSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW 60 ++L+ LSTYRKKRDFEKT+EPSGD ++AP+ + RFVIQKHDATRLHYDLRLEFDGVFKSW Sbjct: 1 MALKKLSTYRKKRDFEKTAEPSGDARIAPAARPRFVIQKHDATRLHYDLRLEFDGVFKSW 60 Query: 61 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF 120 AVT+GPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEG+YGGGTV LWDRG WESDDPERGF Sbjct: 61 AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWESDDPERGF 120 Query: 121 RKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSV 180 KGDLKFTLEG+KLHGSWVLVRM+ DR GGKRTNWLLIKHRDE+A +G ++LD D+SV Sbjct: 121 TKGDLKFTLEGEKLHGSWVLVRMRHDRTGGKRTNWLLIKHRDEFAREGAANDVLDADKSV 180 Query: 181 ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNH--GMAADARARTKAPAPKERL 238 ASGR+M QIAAGKGRAPKPFMLAK + ADA+W SN G ++ TKA + + + Sbjct: 181 ASGRTMEQIAAGKGRAPKPFMLAK-RQRMNADAIWHSNRSDGETKTSKVSTKAASSRTKA 239 Query: 239 ---------KVARQAKPKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQLRVE 289 +V++ A+PK VS +PDFV P+LC +V PP G GW HEIKFDGYRVQ+RVE Sbjct: 240 AKAGRAKSSRVSKMAEPKTVSSLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVE 299 Query: 290 DGEAVLKTRKGLDWSGKFGAIVKEAEKLPDALIDGEIVALDKNGTPHFSTLQAALSDGQT 349 DG+A LKTRKGLDW+ KFG I + A KLPDA+IDGEIVALDK+G P+FS LQAA+S GQT Sbjct: 300 DGQAALKTRKGLDWTAKFGVIAEAAAKLPDAIIDGEIVALDKDGNPNFSALQAAISAGQT 359 Query: 350 DRLIFYAFDLLFAGTEDLRPLPLIERKARLKKLLA--VRKNNPLIRYVEHFEESGETVLD 407 D L+F+AFDL+F DLR PL ERKARL KLL ++ P+IRYVEHFE GE VL+ Sbjct: 360 DELVFFAFDLMFVEEFDLRRQPLRERKARLAKLLKANIKGKTPVIRYVEHFESDGEAVLE 419 Query: 408 SARKLDLEGIVSKRLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAGVYRG 467 SARKL LEGIVSK+LD Y SGR++ WTKAK R GHEVV+GGWKTTNGKFRSLM GV + Sbjct: 420 SARKLSLEGIVSKKLDSAYHSGRTESWTKAKTRPGHEVVVGGWKTTNGKFRSLMVGVNKD 479 Query: 468 DHLAFVGIVGTGFGQDAVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEF 527 DHLA+VGIVGTGFGQD V+ IMPALKAA +DKSPF GK+AP+K R+VHWLKPELVAEIEF Sbjct: 480 DHLAYVGIVGTGFGQDTVKAIMPALKAAASDKSPFSGKNAPRKAREVHWLKPELVAEIEF 539 Query: 528 AGWTDAGNIRQAAFKGLRQDKPAHEVVAERPVVT-KVVKPMAKGVAKKGTG--------- 577 AG+T GN+RQA+FKGLRQDKPA EVVAE PVV KV KP+A+ A TG Sbjct: 540 AGFTGDGNVRQASFKGLRQDKPAREVVAEEPVVAAKVTKPVARAAATVATGGTTVHKTPS 599 Query: 578 --KASSEVMGVVISHPDKALWPDAGDGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRA 635 K ++ VMGV IS PDKALWPDAGDGEPVTKLDLA Y EAVG+WMI +LKGRPCSIVRA Sbjct: 600 RTKGAATVMGVAISKPDKALWPDAGDGEPVTKLDLATYLEAVGDWMIEHLKGRPCSIVRA 659 Query: 636 PDGIKGETFFQRHAMAGTSKLLKLAKVSGDRKPYLQIDQVEGLAAVAQAGGLELHPWNCA 695 PDGI GE FFQRH M G S LL+L KVSGDRKPYLQID+VEGL AVAQ +ELHPWNCA Sbjct: 660 PDGIGGERFFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCA 719 Query: 696 PDAYDTPGRLVFDLDPAPDVAFADVIDAAKDMRQRLTAVGLESFCKTTGGKGLHVVAPLL 755 PDAYD PGRLVFDLDPAP+VAF +VI AAK+MRQRL +GLESFCKTTGGKGLHVV PLL Sbjct: 720 PDAYDVPGRLVFDLDPAPNVAFEEVIAAAKEMRQRLKTLGLESFCKTTGGKGLHVVTPLL 779 Query: 756 AGSRDKVTWKEAKAFAQAVCQWMAQDDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAV 815 G+RD+VTW EAKAFAQ VCQWMA D P+ YL+NMSK R GKIFLDYLRNDRMSTAVAV Sbjct: 780 HGARDQVTWPEAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAV 839 Query: 816 LSPRARPGATVSMPLTWPQLRGDLDPKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKR 875 LSPRAR GATVSMP+TW Q++ LDPK++T+RTVPALLAKTKAWDGY+DAA +I+ A+++ Sbjct: 840 LSPRAREGATVSMPVTWAQVKNGLDPKRYTIRTVPALLAKTKAWDGYDDAAGAIRPAIRK 899 Query: 876 L 876 L Sbjct: 900 L 900 >ref|YP_001242153.1| ATP-dependent DNA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ38247.1| ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module [Bradyrhizobium sp. BTAi1] Length = 895 Score = 1323 bits (3424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 656/893 (73%), Positives = 741/893 (82%), Gaps = 19/893 (2%) Query: 1 VSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW 60 ++L+ LSTYRKKRDFEKT+EPSGD KVAP+ + RFVIQKHDATRLHYDLRLEF GVFKSW Sbjct: 1 MALKKLSTYRKKRDFEKTAEPSGDAKVAPAPRPRFVIQKHDATRLHYDLRLEFGGVFKSW 60 Query: 61 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF 120 AVT+GPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEG+YGGGTV LWDRG W+S+DPERGF Sbjct: 61 AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWDSEDPERGF 120 Query: 121 RKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSV 180 KGDLKFTL+G+KLHGSWVLVRM+ DR GGKRTNWLLIKHRDE+A +G +IL+ DRSV Sbjct: 121 EKGDLKFTLDGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEFAREGAANDILEADRSV 180 Query: 181 ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKERLKV 240 ASGR+MAQIAAGKGRAPKPFML K + ADAVW SN + + AR AP K KV Sbjct: 181 ASGRTMAQIAAGKGRAPKPFMLGK-TKRMNADAVWHSNRSDSKASPARKLAPKSKP-AKV 238 Query: 241 A---RQAKPKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQLRVEDGEAVLKT 297 A +QA P+ V+ +PDFV P+LC +V PP G GW HEIKFDGYRVQ+RVEDG A LKT Sbjct: 239 AGRPKQAAPRSVASLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVEDGRATLKT 298 Query: 298 RKGLDWSGKFGAIVKEAEKLPDALIDGEIVALDKNGTPHFSTLQAALSDGQTDRLIFYAF 357 RKGLDW+ KFGAI +EA KLPDA+IDGEIVAL+++G P+FS LQAA+S GQTD LIF+AF Sbjct: 299 RKGLDWTAKFGAIAEEAGKLPDAIIDGEIVALEQDGNPNFSALQAAISAGQTDELIFFAF 358 Query: 358 DLLFAGTEDLRPLPLIERKARLKKLL--AVRKNNPLIRYVEHFEESGETVLDSARKLDLE 415 DL+F DLR PL ERKARL KLL +++ P IRYVEHFE GE VL+S RKL LE Sbjct: 359 DLMFVDEFDLRRQPLRERKARLAKLLKASIKGKTPRIRYVEHFESDGEAVLESVRKLKLE 418 Query: 416 GIVSKRLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGI 475 GIVSK+LD Y SGR++ WTKAK R GHEVV+GGWKTTNGKFRSLM GV + DHLA+VGI Sbjct: 419 GIVSKKLDSAYHSGRTESWTKAKTRPGHEVVIGGWKTTNGKFRSLMVGVTQDDHLAYVGI 478 Query: 476 VGTGFGQDAVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGN 535 VGTGFGQD V+ IMPAL+AA ADKSPFGGK+AP+K RDVHW+KPELVAEIEFAG+T GN Sbjct: 479 VGTGFGQDTVKEIMPALQAAAADKSPFGGKNAPRKARDVHWVKPELVAEIEFAGFTGDGN 538 Query: 536 IRQAAFKGLRQDKPAHEVVAERPVVT-KVVKPMAKGVAKK-----------GTGKASSEV 583 +RQA+FKGLRQDKPA EVVAE+PVV KV KP+A+ A K+S+ V Sbjct: 539 VRQASFKGLRQDKPAREVVAEQPVVARKVTKPVARAAATVATGGATVHKTPSRSKSSATV 598 Query: 584 MGVVISHPDKALWPDAGDGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRAPDGIKGET 643 MGV IS PDKALWPDAGDGE VTKLDLANY AVG+WMI +LKGRPCSIVRAPDGI GET Sbjct: 599 MGVAISKPDKALWPDAGDGELVTKLDLANYLAAVGDWMIVHLKGRPCSIVRAPDGIAGET 658 Query: 644 FFQRHAMAGTSKLLKLAKVSGDRKPYLQIDQVEGLAAVAQAGGLELHPWNCAPDAYDTPG 703 FFQRH M G S LL+L KVSGDRKPYLQID+VEGL AVAQ +ELHPWNCAPDAYD PG Sbjct: 659 FFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCAPDAYDVPG 718 Query: 704 RLVFDLDPAPDVAFADVIDAAKDMRQRLTAVGLESFCKTTGGKGLHVVAPLLAGSRDKVT 763 RLVFDLDPAP+VAF V+ AAK+MRQRL ++GLESFCKTTGGKGLHVV PL G+RD+VT Sbjct: 719 RLVFDLDPAPNVAFEAVMAAAKEMRQRLESLGLESFCKTTGGKGLHVVVPLRHGARDRVT 778 Query: 764 WKEAKAFAQAVCQWMAQDDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRARPG 823 W EAKAFAQ VCQWMA D P+ YL+NMSK R GKIFLDYLRNDRMSTAVAVLSPRAR G Sbjct: 779 WPEAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAVLSPRAREG 838 Query: 824 ATVSMPLTWPQLRGDLDPKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKRL 876 ATVSMP+TW Q++ LDPK++T+RTVPALLAKTKAW+GY+DAA SIK A+K+L Sbjct: 839 ATVSMPVTWAQVKNGLDPKRYTVRTVPALLAKTKAWEGYDDAARSIKPAIKKL 891 >gb|ABD89220.1| ATP dependent DNA ligase [Rhodopseudomonas palustris BisB18] Length = 920 Score = 1295 bits (3352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/910 (71%), Positives = 745/910 (81%), Gaps = 35/910 (3%) Query: 1 VSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW 60 V+L NL YRKKRDFEKT+EPSG+ KVAPS++RRFVIQKHDATRLHYDLRLEFDGVFKSW Sbjct: 10 VTLDNLKLYRKKRDFEKTAEPSGEAKVAPSQRRRFVIQKHDATRLHYDLRLEFDGVFKSW 69 Query: 61 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF 120 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRG WE+DDPERGF Sbjct: 70 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGYWEADDPERGF 129 Query: 121 RKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSV 180 + GDLKFTL G+KLHGSWVLVRM+ DR GGKRTNWLLIKHRD+ A +G+ +IL ++ SV Sbjct: 130 KTGDLKFTLHGEKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDDDAREGDANDILAQEASV 189 Query: 181 ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKE---- 236 ASGR+M +IAAGKGRAPKPFM+ +AKADAVW SN G+AA+AR +APA + Sbjct: 190 ASGRAMEEIAAGKGRAPKPFMVKA--ARAKADAVWDSNRGLAAEARGEREAPAKRRAASR 247 Query: 237 ----------RLKVARQAKPKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQL 286 + K A++AK K V+ MPDF+APQLC +VE PPGGAGW HEIKFDGYRVQL Sbjct: 248 PAKQAKAKQAKAKPAKRAKAKAVAAMPDFIAPQLCSSVERPPGGAGWGHEIKFDGYRVQL 307 Query: 287 RVEDGEAVLKTRKGLDWSGKFGAIVKEAEKLPDALIDGEIVALDKNGTPHFSTLQAALSD 346 RVE G+A LKTRKGLDW+ KF AI +A LPDA+ID EIVALD G P F+ LQAALSD Sbjct: 308 RVEGGQATLKTRKGLDWTRKFRAIADQAAALPDAIIDTEIVALDAAGAPDFAALQAALSD 367 Query: 347 GQTDRLIFYAFDLLFAGTEDLRPLPLIERKARLKKLLAV---RKNNPLIRYVEHFEESGE 403 TD LI +AFDLLFA EDLR LPL ERK RL+++L R+ +IRYVEHFE G+ Sbjct: 368 ENTDNLICFAFDLLFAEGEDLRALPLSERKQRLQEMLEQARGRRKQSVIRYVEHFESGGD 427 Query: 404 TVLDSARKLDLEGIVSKRLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAG 463 +L SA K+ LEGIVSK+LD PYRSGRS+ WTKAK RAGHEVV+GGWK+ GKFRSLM G Sbjct: 428 AILQSACKMSLEGIVSKKLDAPYRSGRSESWTKAKCRAGHEVVIGGWKSNAGKFRSLMVG 487 Query: 464 VYRGDHLAFVGIVGTGFGQDAVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVA 523 V+R DHLA+VGIVGTGFGQ V+RIMPALKA ++++PFGGK APKKT +VHWLKPELVA Sbjct: 488 VHRDDHLAYVGIVGTGFGQVMVKRIMPALKANASNENPFGGKTAPKKTAEVHWLKPELVA 547 Query: 524 EIEFAGWTDAGNIRQAAFKGLRQDKPAHEVVAERPVVTKVVKPMAKGVAKKGTGKAS--- 580 EIEFAG+T AG +RQAAFKGLRQDKPA EV AE P T V +P K A+ Sbjct: 548 EIEFAGFTGAGMVRQAAFKGLRQDKPAEEVEAETPKKTAVAEPGRGKRGGKAKAGAAKPA 607 Query: 581 ------------SEVMGVVISHPDKALWPDAGDGEPVTKLDLANYFEAVGEWMISYLKGR 628 ++VMGV+IS PDK LWPDA DGEPVTKLDLA YFEAVG+WM+ ++KGR Sbjct: 608 ASKPAAAKPGHPAQVMGVLISKPDKQLWPDASDGEPVTKLDLARYFEAVGDWMLPHIKGR 667 Query: 629 PCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKVSGDRKPYLQIDQVEGLAAVAQAGGLE 688 PCSIVRAPDGIKGE FFQRHAM GTS LL+L VSGDRKPYLQ+D+VEGLAAVAQ GGLE Sbjct: 668 PCSIVRAPDGIKGEQFFQRHAMPGTSNLLELVSVSGDRKPYLQVDRVEGLAAVAQIGGLE 727 Query: 689 LHPWNCAPDAYDTPGRLVFDLDPAPDVAFADVIDAAKDMRQRLTAVGLESFCKTTGGKGL 748 LH WNCAPDA D PGR VFDLDPAPDVAF+DV+ AA++MR+RLTA+GLESFCKTTGGKGL Sbjct: 728 LHAWNCAPDAPDVPGRFVFDLDPAPDVAFSDVVAAAREMRERLTALGLESFCKTTGGKGL 787 Query: 749 HVVAPLLAGSRDKVTWKEAKAFAQAVCQWMAQDDPERYLINMSKAKRTGKIFLDYLRNDR 808 HVV P L+ S+D V WK+AKAFAQAVC+ MA+D PERYL+NMSK R GKIFLDYLRNDR Sbjct: 788 HVVTP-LSKSKDNVDWKQAKAFAQAVCRQMAEDSPERYLLNMSKKLREGKIFLDYLRNDR 846 Query: 809 MSTAVAVLSPRARPGATVSMPLTWPQLRGDLDPKKFTLRTVPALLAKTKAWDGYEDAASS 868 M+TAVAVLSPRAR GATVSMPLTWPQ++GDLDPK+FTLRTVP LLAK+KAW GY++AA+ Sbjct: 847 MATAVAVLSPRARDGATVSMPLTWPQVKGDLDPKRFTLRTVPGLLAKSKAWAGYDEAATP 906 Query: 869 IKSAMKRLAA 878 +K+A+KRLA+ Sbjct: 907 LKAAIKRLAS 916 >ref|YP_533539.2| ATP-dependent DNA ligase [Rhodopseudomonas palustris BisB18] Length = 911 Score = 1295 bits (3350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/910 (71%), Positives = 745/910 (81%), Gaps = 35/910 (3%) Query: 1 VSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW 60 ++L NL YRKKRDFEKT+EPSG+ KVAPS++RRFVIQKHDATRLHYDLRLEFDGVFKSW Sbjct: 1 MTLDNLKLYRKKRDFEKTAEPSGEAKVAPSQRRRFVIQKHDATRLHYDLRLEFDGVFKSW 60 Query: 61 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF 120 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRG WE+DDPERGF Sbjct: 61 AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGYWEADDPERGF 120 Query: 121 RKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEILDEDRSV 180 + GDLKFTL G+KLHGSWVLVRM+ DR GGKRTNWLLIKHRD+ A +G+ +IL ++ SV Sbjct: 121 KTGDLKFTLHGEKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDDDAREGDANDILAQEASV 180 Query: 181 ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKE---- 236 ASGR+M +IAAGKGRAPKPFM+ +AKADAVW SN G+AA+AR +APA + Sbjct: 181 ASGRAMEEIAAGKGRAPKPFMVKA--ARAKADAVWDSNRGLAAEARGEREAPAKRRAASR 238 Query: 237 ----------RLKVARQAKPKQVSEMPDFVAPQLCRAVEAPPGGAGWCHEIKFDGYRVQL 286 + K A++AK K V+ MPDF+APQLC +VE PPGGAGW HEIKFDGYRVQL Sbjct: 239 PAKQAKAKQAKAKPAKRAKAKAVAAMPDFIAPQLCSSVERPPGGAGWGHEIKFDGYRVQL 298 Query: 287 RVEDGEAVLKTRKGLDWSGKFGAIVKEAEKLPDALIDGEIVALDKNGTPHFSTLQAALSD 346 RVE G+A LKTRKGLDW+ KF AI +A LPDA+ID EIVALD G P F+ LQAALSD Sbjct: 299 RVEGGQATLKTRKGLDWTRKFRAIADQAAALPDAIIDTEIVALDAAGAPDFAALQAALSD 358 Query: 347 GQTDRLIFYAFDLLFAGTEDLRPLPLIERKARLKKLLAV---RKNNPLIRYVEHFEESGE 403 TD LI +AFDLLFA EDLR LPL ERK RL+++L R+ +IRYVEHFE G+ Sbjct: 359 ENTDNLICFAFDLLFAEGEDLRALPLSERKQRLQEMLEQARGRRKQSVIRYVEHFESGGD 418 Query: 404 TVLDSARKLDLEGIVSKRLDRPYRSGRSDDWTKAKVRAGHEVVLGGWKTTNGKFRSLMAG 463 +L SA K+ LEGIVSK+LD PYRSGRS+ WTKAK RAGHEVV+GGWK+ GKFRSLM G Sbjct: 419 AILQSACKMSLEGIVSKKLDAPYRSGRSESWTKAKCRAGHEVVIGGWKSNAGKFRSLMVG 478 Query: 464 VYRGDHLAFVGIVGTGFGQDAVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVA 523 V+R DHLA+VGIVGTGFGQ V+RIMPALKA ++++PFGGK APKKT +VHWLKPELVA Sbjct: 479 VHRDDHLAYVGIVGTGFGQVMVKRIMPALKANASNENPFGGKTAPKKTAEVHWLKPELVA 538 Query: 524 EIEFAGWTDAGNIRQAAFKGLRQDKPAHEVVAERPVVTKVVKPMAKGVAKKGTGKAS--- 580 EIEFAG+T AG +RQAAFKGLRQDKPA EV AE P T V +P K A+ Sbjct: 539 EIEFAGFTGAGMVRQAAFKGLRQDKPAEEVEAETPKKTAVAEPGRGKRGGKAKAGAAKPA 598 Query: 581 ------------SEVMGVVISHPDKALWPDAGDGEPVTKLDLANYFEAVGEWMISYLKGR 628 ++VMGV+IS PDK LWPDA DGEPVTKLDLA YFEAVG+WM+ ++KGR Sbjct: 599 ASKPAAAKPGHPAQVMGVLISKPDKQLWPDASDGEPVTKLDLARYFEAVGDWMLPHIKGR 658 Query: 629 PCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKVSGDRKPYLQIDQVEGLAAVAQAGGLE 688 PCSIVRAPDGIKGE FFQRHAM GTS LL+L VSGDRKPYLQ+D+VEGLAAVAQ GGLE Sbjct: 659 PCSIVRAPDGIKGEQFFQRHAMPGTSNLLELVSVSGDRKPYLQVDRVEGLAAVAQIGGLE 718 Query: 689 LHPWNCAPDAYDTPGRLVFDLDPAPDVAFADVIDAAKDMRQRLTAVGLESFCKTTGGKGL 748 LH WNCAPDA D PGR VFDLDPAPDVAF+DV+ AA++MR+RLTA+GLESFCKTTGGKGL Sbjct: 719 LHAWNCAPDAPDVPGRFVFDLDPAPDVAFSDVVAAAREMRERLTALGLESFCKTTGGKGL 778 Query: 749 HVVAPLLAGSRDKVTWKEAKAFAQAVCQWMAQDDPERYLINMSKAKRTGKIFLDYLRNDR 808 HVV P L+ S+D V WK+AKAFAQAVC+ MA+D PERYL+NMSK R GKIFLDYLRNDR Sbjct: 779 HVVTP-LSKSKDNVDWKQAKAFAQAVCRQMAEDSPERYLLNMSKKLREGKIFLDYLRNDR 837 Query: 809 MSTAVAVLSPRARPGATVSMPLTWPQLRGDLDPKKFTLRTVPALLAKTKAWDGYEDAASS 868 M+TAVAVLSPRAR GATVSMPLTWPQ++GDLDPK+FTLRTVP LLAK+KAW GY++AA+ Sbjct: 838 MATAVAVLSPRARDGATVSMPLTWPQVKGDLDPKRFTLRTVPGLLAKSKAWAGYDEAATP 897 Query: 869 IKSAMKRLAA 878 +K+A+KRLA+ Sbjct: 898 LKAAIKRLAS 907