BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0010.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773414.1| hypothetical protein blr6774 [Bradyrhizobium ja... 493 e-137 ref|YP_001242155.1| hypothetical protein BBta_6331 [Bradyrhizobi... 490 e-136 ref|YP_533540.1| hypothetical protein RPC_3686 [Rhodopseudomonas... 489 e-136 ref|YP_001207705.1| putative Ku protein [Bradyrhizobium sp. ORS ... 486 e-135 ref|YP_570615.1| hypothetical protein RPD_3491 [Rhodopseudomonas... 483 e-134 >ref|NP_773414.1| hypothetical protein blr6774 [Bradyrhizobium japonicum USDA 110] dbj|BAC52039.1| blr6774 [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 236/293 (80%), Positives = 263/293 (89%) Query: 3 APRAYWKGTLKLSLVSCPVALYPASTAVEKTRFHMINRETGNRLKQQMVDTETGDVVEGD 62 APRAYWKGTLKLSLVSCPV LYPA+TA EKTRFHMINRETGNRLKQQMVD+ETGDVVE D Sbjct: 2 APRAYWKGTLKLSLVSCPVVLYPATTAAEKTRFHMINRETGNRLKQQMVDSETGDVVESD 61 Query: 63 QKGRGYEVSKGKYVEIEKDELEAVQIESNHTIDIDSFVPEGEIDKRYLDHPYYIRPDGKA 122 QKGRGYE+ KGKYVEIE +ELEAVQIESNHTIDI+SFVP EID+RYLDHPYYI PDGKA Sbjct: 62 QKGRGYELRKGKYVEIEPEELEAVQIESNHTIDIESFVPSDEIDQRYLDHPYYIAPDGKA 121 Query: 123 GVDAFAVIRDAMKDQDRVALARIVLTNREHVIAIEPLDKGMLGTTLRYPYELRDADDYFD 182 +DAFAVIRDAMKDQ+RVALA+IVLTNREHV+AIEPL KG+LGTTLRYPYELRD D +FD Sbjct: 122 AIDAFAVIRDAMKDQERVALAKIVLTNREHVMAIEPLGKGLLGTTLRYPYELRDEDQFFD 181 Query: 183 DIKSPKVTKDMIELAGHILDSKAAHFDPSKFKDEYETALKALVRRKAAGKPIKAAEREEK 242 DIKSPK+T+DM+ELAGHIL +KAAHFDPSKFKD+YETALKALV+RKA+GK I+ E EE+ Sbjct: 182 DIKSPKITRDMVELAGHILHTKAAHFDPSKFKDQYETALKALVKRKASGKTIELPEPEER 241 Query: 243 PSNVVSLMDALQQSLKGGKSGARRSRSTARRPTAHRRAAKKAHRSSARRRKAG 295 PSNVVSLMDAL+QSL+G G ++S RR T RAAKK HRS+AR+RKAG Sbjct: 242 PSNVVSLMDALKQSLRGRGGGRPSAKSHGRRTTGRGRAAKKVHRSTARQRKAG 294 >ref|YP_001242155.1| hypothetical protein BBta_6331 [Bradyrhizobium sp. BTAi1] gb|ABQ38249.1| hypothetical protein BBta_6331 [Bradyrhizobium sp. BTAi1] Length = 293 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/293 (79%), Positives = 269/293 (91%), Gaps = 1/293 (0%) Query: 3 APRAYWKGTLKLSLVSCPVALYPASTAVEKTRFHMINRETGNRLKQQMVDTETGDVVEGD 62 APRAYWKG+LKLSLVSCPV LYPAST+VEKTRFH+INRETGNRLKQQMVD ETGD+VEG+ Sbjct: 2 APRAYWKGSLKLSLVSCPVVLYPASTSVEKTRFHLINRETGNRLKQQMVDAETGDIVEGE 61 Query: 63 QKGRGYEVSKGKYVEIEKDELEAVQIESNHTIDIDSFVPEGEIDKRYLDHPYYIRPDGKA 122 QKGRGYE++KG+YVEIE +ELEAV+IESNHTIDIDSFVP EID+RYL+HPYYI PDGKA Sbjct: 62 QKGRGYELAKGQYVEIEPEELEAVRIESNHTIDIDSFVPREEIDQRYLNHPYYIAPDGKA 121 Query: 123 GVDAFAVIRDAMKDQDRVALARIVLTNREHVIAIEPLDKGMLGTTLRYPYELRDADDYFD 182 +DAFAVIRDAMKD+DR+ALARIVLT+REHVIAIEP+ KG+LGTTLR+PYELRD ++FD Sbjct: 122 ALDAFAVIRDAMKDRDRIALARIVLTHREHVIAIEPMGKGLLGTTLRFPYELRDEAEFFD 181 Query: 183 DIKSPKVTKDMIELAGHILDSKAAHFDPSKFKDEYETALKALVRRKAAGKPIKAAEREEK 242 DIKSP++TKDMIELA HIL +KAAHFDPS+FKD+YETALK LV+RKAAGKPIK E E++ Sbjct: 182 DIKSPRITKDMIELASHILQTKAAHFDPSEFKDQYETALKTLVKRKAAGKPIKLPEPEQR 241 Query: 243 PSNVVSLMDALQQSLKGGKSGARRSRSTARRPTAHRRAAKKAHRSSARRRKAG 295 NVVSLMDAL+QSLK GKSG + +R+ ARRP+ RRAAKKAHRS+AR+RKAG Sbjct: 242 SDNVVSLMDALKQSLK-GKSGPKGTRAPARRPSPQRRAAKKAHRSAARQRKAG 293 >ref|YP_533540.1| hypothetical protein RPC_3686 [Rhodopseudomonas palustris BisB18] gb|ABD89221.1| Ku [Rhodopseudomonas palustris BisB18] Length = 291 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/295 (81%), Positives = 263/295 (89%), Gaps = 6/295 (2%) Query: 1 MAAPRAYWKGTLKLSLVSCPVALYPASTAVEKTRFHMINRETGNRLKQQMVDTETGDVVE 60 MA PRAYWKGTLKLSLVSCPVALYPAST+VEKTRFHMIN ETGNRLKQQMVD ETGDVV+ Sbjct: 1 MATPRAYWKGTLKLSLVSCPVALYPASTSVEKTRFHMINAETGNRLKQQMVDEETGDVVK 60 Query: 61 GDQKGRGYEVSKGKYVEIEKDELEAVQIESNHTIDIDSFVPEGEIDKRYLDHPYYIRPDG 120 DQK RGYE+SKGK+VEIEKDEL+AVQI+S HTI+IDSFVP EI+KRYL+HPYYI PDG Sbjct: 61 KDQKARGYEISKGKFVEIEKDELDAVQIDSTHTIEIDSFVPAAEIEKRYLNHPYYIVPDG 120 Query: 121 KAGVDAFAVIRDAMKDQDRVALARIVLTNREHVIAIEPLDKGMLGTTLRYPYELRDADDY 180 KAGVDAFAVIRDAMKD+DRVALARIVLTNREHVIAIEP KG+LGTTLRYPYELRDADDY Sbjct: 121 KAGVDAFAVIRDAMKDKDRVALARIVLTNREHVIAIEPFGKGLLGTTLRYPYELRDADDY 180 Query: 181 FDDIKSPKVTKDMIELAGHILDSKAAHFDPSKFKDEYETALKALVRRKAAGKPIKAAERE 240 FD IKSPK+TKDMIELA HILDSKAAHFDPSKFKD+YETALKALV+RKA+GKP+K AERE Sbjct: 181 FDGIKSPKITKDMIELASHILDSKAAHFDPSKFKDDYETALKALVKRKASGKPLKVAERE 240 Query: 241 EKPSNVVSLMDALQQSLKGGKSGARRSRSTARRPTAHRRA-AKKAHRSSARRRKA 294 EK NV+SLMDAL+QSLKGGK+ + RR RR A KA R++ARRRKA Sbjct: 241 EKSDNVISLMDALKQSLKGGKAD-----TAPRRAQPARRGRAAKAPRATARRRKA 290 >ref|YP_001207705.1| putative Ku protein [Bradyrhizobium sp. ORS 278] sp|A4Z012.1|Y5824_BRASO RecName: Full=Probable DNA repair protein BRADO5824 emb|CAL79488.1| conserved hypothetical protein; putative Ku protein [Bradyrhizobium sp. ORS 278] Length = 292 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/293 (79%), Positives = 265/293 (90%), Gaps = 2/293 (0%) Query: 3 APRAYWKGTLKLSLVSCPVALYPASTAVEKTRFHMINRETGNRLKQQMVDTETGDVVEGD 62 APRAYWKG+LKLSLV+CPV LYPAST+VEKTRFH+INRETGNRLKQQM+D ETGD+VEGD Sbjct: 2 APRAYWKGSLKLSLVTCPVVLYPASTSVEKTRFHLINRETGNRLKQQMIDAETGDLVEGD 61 Query: 63 QKGRGYEVSKGKYVEIEKDELEAVQIESNHTIDIDSFVPEGEIDKRYLDHPYYIRPDGKA 122 QKGRGYE+SKG+YVEIE +ELEAVQIESNHTIDIDSFVP EID+RYL+HPYYI PDGKA Sbjct: 62 QKGRGYELSKGQYVEIEPEELEAVQIESNHTIDIDSFVPREEIDQRYLNHPYYIAPDGKA 121 Query: 123 GVDAFAVIRDAMKDQDRVALARIVLTNREHVIAIEPLDKGMLGTTLRYPYELRDADDYFD 182 VDAFAVIRDAMKDQDRVALARIVLT+REHVIAIEP+ KGMLGTTLR+PYELRD ++FD Sbjct: 122 AVDAFAVIRDAMKDQDRVALARIVLTHREHVIAIEPMGKGMLGTTLRFPYELRDEAEFFD 181 Query: 183 DIKSPKVTKDMIELAGHILDSKAAHFDPSKFKDEYETALKALVRRKAAGKPIKAAEREEK 242 DIK+PK+TKDM+ELAGHIL +KAAHF PS+FKD+YETALKALV+RKA+GKPIK E EE+ Sbjct: 182 DIKAPKITKDMVELAGHILQTKAAHFKPSEFKDQYETALKALVKRKASGKPIKLPEPEER 241 Query: 243 PSNVVSLMDALQQSLKGGKSGARRSRSTARRPTAHRRAAKKAHRSSARRRKAG 295 NVVSLMDAL+QSL GK + + + +RR AHRR AKKAHRS+AR+RKAG Sbjct: 242 SGNVVSLMDALKQSL--GKGDKKAAPAPSRRAPAHRRPAKKAHRSAARQRKAG 292 >ref|YP_570615.1| hypothetical protein RPD_3491 [Rhodopseudomonas palustris BisB5] gb|ABE40714.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 294 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 241/297 (81%), Positives = 264/297 (88%), Gaps = 7/297 (2%) Query: 1 MAAPRAYWKGTLKLSLVSCPVALYPASTAVEKTRFHMINRETGNRLKQQMVDTETGDVVE 60 MA PRAYWKG+LKLSLVSCPVALYPAST+VEKTRFHMIN ETGNRLKQQMVD TG+VVE Sbjct: 1 MAPPRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMVDEGTGEVVE 60 Query: 61 GDQKGRGYEVSKGKYVEIEKDELEAVQIESNHTIDIDSFVPEGEIDKRYLDHPYYIRPDG 120 DQKGRGYEV KGKYVEIEKDELEAVQIES HTI+IDSFVP EIDKRYL++PYYI P+G Sbjct: 61 KDQKGRGYEVRKGKYVEIEKDELEAVQIESTHTIEIDSFVPAEEIDKRYLNNPYYIAPEG 120 Query: 121 KAGVDAFAVIRDAMKDQDRVALARIVLTNREHVIAIEPLDKGMLGTTLRYPYELRDADDY 180 KAG+DAFAVIRDAMKD+DRVALARIVL+NREHVIAIEPL KG+L TTLRYPYELR+ DDY Sbjct: 121 KAGIDAFAVIRDAMKDKDRVALARIVLSNREHVIAIEPLGKGLLATTLRYPYELREPDDY 180 Query: 181 FDDIKSPKVTKDMIELAGHILDSKAAHFDPSKFKDEYETALKALVRRKAAGKPIKAAERE 240 FD IKSPK++KDM+ELAGHILD+KAA+FDPSKFKD+YETALKALV+RKAAGK IK AE E Sbjct: 181 FDGIKSPKISKDMVELAGHILDTKAANFDPSKFKDDYETALKALVKRKAAGKSIKVAEPE 240 Query: 241 EKPSNVVSLMDALQQSLKGGKSGARRSRSTARRPTAHR---RAAKKAHRSSARRRKA 294 EK NVVSLMDAL+QSL+G KSG +S RR A R R+AKKAHRSSAR RKA Sbjct: 241 EKSDNVVSLMDALKQSLEGKKSG----KSAPRRAPAARGRGRSAKKAHRSSARARKA 293