BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0008.p         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001242158.1| two-component regulatory system response reg...   134   6e-30
ref|NP_773415.1| two-component response regulator [Bradyrhizobiu...   131   3e-29
ref|YP_001207707.1| two-component regulatory system response reg...   130   6e-29
ref|YP_534387.1| two component transcriptional regulator [Rhodop...   129   2e-28
ref|YP_567805.1| response regulator receiver [Rhodopseudomonas p...   127   4e-28

>ref|YP_001242158.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ38252.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Bradyrhizobium sp. BTAi1]
          Length = 229

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 65/66 (98%)

Query: 1   LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 60
           LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY
Sbjct: 164 LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 223

Query: 61  RLRAAD 66
           RLRA D
Sbjct: 224 RLRAPD 229


>ref|NP_773415.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC52040.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 229

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 65/66 (98%)

Query: 1   LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 60
           LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQ+VLTETGIGY
Sbjct: 164 LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQYVLTETGIGY 223

Query: 61  RLRAAD 66
           RL+A D
Sbjct: 224 RLKAGD 229


>ref|YP_001207707.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS 278]
 emb|CAL79490.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Bradyrhizobium sp. ORS 278]
          Length = 229

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 64/66 (96%)

Query: 1   LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 60
           LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERP FVLTETGIGY
Sbjct: 164 LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPYFVLTETGIGY 223

Query: 61  RLRAAD 66
           RLRA D
Sbjct: 224 RLRAPD 229


>ref|YP_534387.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD90068.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 229

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 64/66 (96%)

Query: 1   LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 60
           LRVLVQHAGKVLTHRFLLKELW+ELTDAQYLRVYVRQLRQKIE DPERPQF+LTETGIGY
Sbjct: 164 LRVLVQHAGKVLTHRFLLKELWNELTDAQYLRVYVRQLRQKIEPDPERPQFLLTETGIGY 223

Query: 61  RLRAAD 66
           RLRA D
Sbjct: 224 RLRAPD 229


>ref|YP_567805.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gb|ABE37904.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/66 (92%), Positives = 63/66 (95%)

Query: 1   LRVLVQHAGKVLTHRFLLKELWDELTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 60
           LR+LVQHAGKVLTH+FLL ELWD LTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY
Sbjct: 164 LRILVQHAGKVLTHKFLLGELWDPLTDAQYLRVYVRQLRQKIEADPERPQFVLTETGIGY 223

Query: 61  RLRAAD 66
           RLRA D
Sbjct: 224 RLRAPD 229