BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0228.0013.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770871.1| hypothetical protein blr4231 [Bradyrhizobium ja... 338 3e-91 ref|YP_532691.1| negative transcriptional regulator [Rhodopseudo... 184 7e-45 ref|YP_486586.1| negative transcriptional regulator [Rhodopseudo... 176 2e-42 ref|YP_004109339.1| FMN-binding negative transcriptional regulat... 171 7e-41 ref|YP_001239957.1| negative transcriptional regulator [Bradyrhi... 171 9e-41 >ref|NP_770871.1| hypothetical protein blr4231 [Bradyrhizobium japonicum USDA 110] dbj|BAC49496.1| blr4231 [Bradyrhizobium japonicum USDA 110] Length = 213 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 164/212 (77%), Positives = 185/212 (87%) Query: 1 MHILRPQFRIEQDRALAFAAARGFGAIVAADARGPRASHVPFVIERRDERVIVQIHLTAK 60 MH+LRPQFRIE+ RAL FA RGFG IVAAD RGPRASHVPFV+++RD + IVQ+HL A+ Sbjct: 1 MHVLRPQFRIEKQRALEFAGQRGFGVIVAADERGPRASHVPFVLDQRDGQAIVQVHLAAR 60 Query: 61 NPLVELADGTRRFLLIVSGDDAYISNDWYVSPDNVSTWLYEAVHLSGVAHLRDHGENRGH 120 NPLV LADGTRRFLLIV+GDDAYISNDWY S DNVSTWLYEAVHLSGVAHLR ENRGH Sbjct: 61 NPLVPLADGTRRFLLIVAGDDAYISNDWYSSRDNVSTWLYEAVHLSGVAHLRGLDENRGH 120 Query: 121 GDALLAASEARLPKQPWDLTQMEPGKREAMLAGIRVIDIVVDEIEGQSKLNQHKSDADYV 180 GDALLA +EARLPKQPWDL QMEP KRE+MLA IRVID+VVD+IEGQ+KLNQHKSDAD+V Sbjct: 121 GDALLAVAEARLPKQPWDLAQMEPDKRESMLAAIRVIDLVVDQIEGQAKLNQHKSDADHV 180 Query: 181 ALVNRLAHAEETSSHRLAEKMRALRPELKYDV 212 A+ + LA +EET RLA KM+ALRPEL Y++ Sbjct: 181 AVADHLARSEETVHRRLARKMQALRPELGYEM 212 >ref|YP_532691.1| negative transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD88372.1| negative transcriptional regulator [Rhodopseudomonas palustris BisB18] Length = 227 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 129/205 (62%), Gaps = 2/205 (0%) Query: 6 PQFRIEQDRALAFAAARGFGAIVAADARGPRASHVPFVIE-RRDERVIVQIHLTAKNPLV 64 P+F+ ++ L FAAARGFG + D P + VPFVIE D ++ H+ +NPL Sbjct: 5 PRFQPDRAAMLGFAAARGFGTVCGWDGGKPIGAAVPFVIEFSSDGTPLLTFHVARQNPLT 64 Query: 65 ELADGTRRFLLIVSGDDAYISNDWYVSPDNVSTWLYEAVHLSGVAHLRDHGENRGHGDAL 124 L DG +L+ V+G DAY+S DWY SP+ V TWLY++VHLSG A L E H DA+ Sbjct: 65 RLGDGRTPWLMAVNGADAYVSADWYASPEQVPTWLYQSVHLSGPAALMSDRELDQHLDAV 124 Query: 125 LAASEARL-PKQPWDLTQMEPGKREAMLAGIRVIDIVVDEIEGQSKLNQHKSDADYVALV 183 A E+ L PK PW +M G+REAM I + + VDE+EG KLNQHKSDAD++A+ Sbjct: 125 TEAFESSLAPKPPWRFAKMAAGRREAMKQAIMGVMMRVDEVEGSFKLNQHKSDADHLAVT 184 Query: 184 NRLAHAEETSSHRLAEKMRALRPEL 208 LA E+ S+ +A +MRA+RP+L Sbjct: 185 TALARREDCSAQHVAAQMRAMRPQL 209 >ref|YP_486586.1| negative transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD07675.1| negative transcriptional regulator [Rhodopseudomonas palustris HaA2] Length = 222 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 125/207 (60%), Gaps = 2/207 (0%) Query: 6 PQFRIEQDRALAFAAARGFGAIVAADARGPRASHVPFVIERRDERV-IVQIHLTAKNPLV 64 P F+ ++ + LAFAAARGFG + A D R P AS +PF + ++ H+ NPL Sbjct: 5 PPFKSDRSQCLAFAAARGFGLVCAHDGRKPVASPLPFAVGYSSNGTPLLSFHVARGNPLA 64 Query: 65 ELADGTRRFLLIVSGDDAYISNDWYVSPDNVSTWLYEAVHLSGVAHLRDHGENRGHGDAL 124 LAD +L+ VSG AY+S DWY SPD V TWLY++VHL+G A + E H D + Sbjct: 65 ALADSRTSWLMAVSGPGAYVSADWYASPDQVPTWLYQSVHLTGAAAVMSEAELDSHLDEV 124 Query: 125 LAASEARL-PKQPWDLTQMEPGKREAMLAGIRVIDIVVDEIEGQSKLNQHKSDADYVALV 183 A E+ L PK+PW +M G+R AM I + + VD +EG KLNQHKSDAD+VA+ Sbjct: 125 SAVFESSLAPKRPWTAAKMTAGRRSAMKKAIVGVMMRVDLVEGSFKLNQHKSDADHVAVA 184 Query: 184 NRLAHAEETSSHRLAEKMRALRPELKY 210 LA + ++ +A +M ALRP+L Y Sbjct: 185 IALARQGDPAAQEIAAQMIALRPQLDY 211 >ref|YP_004109339.1| FMN-binding negative transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU44606.1| FMN-binding negative transcriptional regulator [Rhodopseudomonas palustris DX-1] Length = 221 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 120/214 (56%), Gaps = 2/214 (0%) Query: 6 PQFRIEQDRALAFAAARGFGAIVAADARGPRASHVPFVIER-RDERVIVQIHLTAKNPLV 64 PQF+ ++ LAFAAARGFG A DA GP AS +PF I+ D ++ H+ NPL Sbjct: 5 PQFKPDRSACLAFAAARGFGLACAHDAAGPIASPLPFAIQYASDGTPLLSFHIARNNPLA 64 Query: 65 ELADGTRRFLLIVSGDDAYISNDWYVSPDNVSTWLYEAVHLSGVAHLRDHGENRGHGDAL 124 AD +L+ V+ AY+S DWY SPD V TWLY V L+G A + E D + Sbjct: 65 RCADARTPWLMAVTAGHAYVSADWYASPDQVPTWLYRNVQLTGPAAVMSASELEAQLDDV 124 Query: 125 LAASEARL-PKQPWDLTQMEPGKREAMLAGIRVIDIVVDEIEGQSKLNQHKSDADYVALV 183 A E L PK+PW + +M G+R AM I + + VD + G KLNQHKSDAD+VA+ Sbjct: 125 SAVFETALAPKRPWTMAKMAAGRRNAMKQAIVGVMMRVDSVAGSFKLNQHKSDADHVAVA 184 Query: 184 NRLAHAEETSSHRLAEKMRALRPELKYDVGRCVG 217 LA + S +A +M ALRP L Y V G Sbjct: 185 TALARQPDPGSQEIAAEMVALRPHLDYTVPALAG 218 >ref|YP_001239957.1| negative transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36051.1| negative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 216 Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 120/204 (58%), Gaps = 2/204 (0%) Query: 6 PQFRIEQDRALAFAAARGFGAIVAADARGPRASHVPFVI-ERRDERVIVQIHLTAKNPLV 64 P F+ ++ +L FA ARGFG + A D P AS VPF + D H+ NPL Sbjct: 5 PPFKPDRAASLGFADARGFGTVCAWDGSKPIASLVPFHLGALNDGTPQAFFHVARNNPLA 64 Query: 65 ELADGTRRFLLIVSGDDAYISNDWYVSPDNVSTWLYEAVHLSGVAHLRDHGENRGHGDAL 124 ++ADG +LL VSG DAY+S DWYVSPD V TWLY+AVHL+G A + E D + Sbjct: 65 KVADGATPWLLAVSGADAYVSADWYVSPDQVPTWLYQAVHLTGTARILSEAELARQVDEV 124 Query: 125 LAASEAR-LPKQPWDLTQMEPGKREAMLAGIRVIDIVVDEIEGQSKLNQHKSDADYVALV 183 A E R LPK+PW +M G+ EAM I I + +D++EG KLNQHKS+ADY A+ Sbjct: 125 SAKFEQRLLPKKPWTSDKMTAGRLEAMRKAIVGIVMTIDQVEGSFKLNQHKSEADYAAIA 184 Query: 184 NRLAHAEETSSHRLAEKMRALRPE 207 RL + S +++ MR RP+ Sbjct: 185 TRLGEQPDIGSQQISSLMRQARPQ 208