BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0228.0006.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205925.1| hypothetical protein BRADO3943 [Bradyrhizobi...    41   0.056
ref|YP_004760983.1| short chain dehydrogenase [Corynebacterium v...    37   0.80 

>ref|YP_001205925.1| hypothetical protein BRADO3943 [Bradyrhizobium sp. ORS 278]
 emb|CAL77700.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 72

 Score = 41.2 bits (95), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 1  MPYYTFDLVVGDEFRNQGTIILEDISLASDRADQLANELSQVKPELKARGCAVRVTDIDR 60
          MP+Y FDL   +    +  + L     A D AD +A +L    PEL+ +  AV VT+ + 
Sbjct: 1  MPFYHFDLTNSETLAGERYVELPGDVEAMDSADVIARQLIMDHPELRHQDYAVLVTNEEG 60

Query: 61 RELYRTPLD 69
           E+ R PLD
Sbjct: 61 DEICRVPLD 69


>ref|YP_004760983.1| short chain dehydrogenase [Corynebacterium variabile DSM 44702]
 gb|AEK37910.1| short chain dehydrogenase [Corynebacterium variabile DSM 44702]
          Length = 266

 Score = 37.4 bits (85), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 10 VGDEFRNQGTIILEDISLA---SDRADQLANELSQVKPELKARGCAVRVTDIDR-RELYR 65
          +G E   Q   +  D++L    +DR D+LA E++   P + AR  A+ VTD D  RE++R
Sbjct: 23 LGAELARQSAALGHDLALCARRTDRLDELATEIAASNPSVTARTYALDVTDGDAVREVFR 82

Query: 66 T 66
          T
Sbjct: 83 T 83