BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0228.0004.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004611403.1| type 11 methyltransferase [Mesorhizobium opp... 397 e-109 ref|NP_766700.1| hypothetical protein blr0060 [Bradyrhizobium ja... 395 e-108 gb|AEJ27086.1| Ubiquinone/menaquinone biosynthesis methyltransfe... 387 e-105 ref|YP_917120.1| methyltransferase type 11 [Paracoccus denitrifi... 379 e-103 ref|ZP_05742768.1| methyltransferase type 11 [Silicibacter sp. T... 375 e-102 >ref|YP_004611403.1| type 11 methyltransferase [Mesorhizobium opportunistum WSM2075] gb|AEH87309.1| Methyltransferase type 11 [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 183/242 (75%), Positives = 213/242 (88%) Query: 1 MAQNIYDDPGFFAGYSQLPRQVRGLLGAPEWPAIRALLPDIAGKRAVDLGCGFGWVSRWM 60 MAQNIYDDP FF+GYSQLPRQV+GL GAPEWPAIRALLPD+A KR VDLGCGFGW SRWM Sbjct: 1 MAQNIYDDPNFFSGYSQLPRQVQGLSGAPEWPAIRALLPDLADKRIVDLGCGFGWASRWM 60 Query: 61 REQGASDVLGVDLSQNMIARATAMTQDAAITYEIADLETLELPKSTFDLAYSALTFHYIR 120 REQGA+ VLG+DLS+NMI+RA T D AITY ADLETLELP++ FDLAYSALTFHYIR Sbjct: 61 REQGATSVLGIDLSENMISRAQENTSDNAITYRTADLETLELPEAAFDLAYSALTFHYIR 120 Query: 121 DFDRLARMLYRALVPEGHLVFTIEHPIYMAAAHPDWGQDEDGRKTWPVNRYFIEGERRTD 180 DF+RLARM++++LVP VF IEHPI+MAAAHP W +DE+GRKTWPVNRY +EGERRTD Sbjct: 121 DFERLARMVHQSLVPGADFVFIIEHPIFMAAAHPRWIKDENGRKTWPVNRYAVEGERRTD 180 Query: 181 WYVKGVLKYHRTIGTTLNALIGAGFTLRHVEEFSPTREQVKAMPELADELERPMMLLVSA 240 W+VKGV+KYHRT+GTTLNALI AGFT++ VEEF+P+ EQ++ P L +ELERPMMLL+SA Sbjct: 181 WFVKGVVKYHRTVGTTLNALIHAGFTIKAVEEFAPSLEQIRENPALEEELERPMMLLISA 240 Query: 241 QR 242 +R Sbjct: 241 RR 242 >ref|NP_766700.1| hypothetical protein blr0060 [Bradyrhizobium japonicum USDA 110] dbj|BAC45325.1| blr0060 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/240 (75%), Positives = 209/240 (87%) Query: 1 MAQNIYDDPGFFAGYSQLPRQVRGLLGAPEWPAIRALLPDIAGKRAVDLGCGFGWVSRWM 60 MAQNIYD+P FFAGYSQLPRQV GL GAPEWPAIRA+LPD+ GKR VDLGCGFGW SRWM Sbjct: 1 MAQNIYDNPDFFAGYSQLPRQVHGLDGAPEWPAIRAMLPDLVGKRVVDLGCGFGWASRWM 60 Query: 61 REQGASDVLGVDLSQNMIARATAMTQDAAITYEIADLETLELPKSTFDLAYSALTFHYIR 120 REQGA+ VLG+DLSQNMI RA A T D AI Y IADL+TL+LP++ FDLAYSALTFHY++ Sbjct: 61 REQGAASVLGLDLSQNMIERARADTADTAIEYRIADLDTLDLPEAAFDLAYSALTFHYVQ 120 Query: 121 DFDRLARMLYRALVPEGHLVFTIEHPIYMAAAHPDWGQDEDGRKTWPVNRYFIEGERRTD 180 DF RL ++ + LVP+GH VFTIEHPI+MAAAHP W DE+GRKTWPVNRY +EGERRTD Sbjct: 121 DFGRLVHVIRKTLVPDGHFVFTIEHPIFMAAAHPHWISDEEGRKTWPVNRYSVEGERRTD 180 Query: 181 WYVKGVLKYHRTIGTTLNALIGAGFTLRHVEEFSPTREQVKAMPELADELERPMMLLVSA 240 W+ KGVLKYHRT+GTTLN LIGAG +R +EEF+PTREQ++ MP+LA+ELERPMML+VSA Sbjct: 181 WFAKGVLKYHRTLGTTLNTLIGAGLQIRRIEEFAPTREQIQQMPQLAEELERPMMLIVSA 240 >gb|AEJ27086.1| Ubiquinone/menaquinone biosynthesis methyltransferase [Paracoccus denitrificans SD1] Length = 257 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/242 (75%), Positives = 205/242 (84%) Query: 1 MAQNIYDDPGFFAGYSQLPRQVRGLLGAPEWPAIRALLPDIAGKRAVDLGCGFGWVSRWM 60 MAQNIYD+P FFAGYSQLPRQV GL GAPEWPAIRALLPD+A KR DLGCGFGW SRW Sbjct: 15 MAQNIYDNPDFFAGYSQLPRQVHGLEGAPEWPAIRALLPDVAEKRVADLGCGFGWASRWF 74 Query: 61 REQGASDVLGVDLSQNMIARATAMTQDAAITYEIADLETLELPKSTFDLAYSALTFHYIR 120 REQ A+ V G DLSQNMI RA A T D AI Y IADLE L+LP++ FDL YSAL FHY+ Sbjct: 75 REQCAASVTGFDLSQNMIERARADTSDPAIDYRIADLEVLDLPQAVFDLVYSALAFHYVA 134 Query: 121 DFDRLARMLYRALVPEGHLVFTIEHPIYMAAAHPDWGQDEDGRKTWPVNRYFIEGERRTD 180 DFDRL RM++RAL P+G+LVFTIEHPI+MAAAHP W DEDGRKTWPVN Y +EGERRTD Sbjct: 135 DFDRLIRMIHRALAPDGNLVFTIEHPIFMAAAHPHWLLDEDGRKTWPVNGYSVEGERRTD 194 Query: 181 WYVKGVLKYHRTIGTTLNALIGAGFTLRHVEEFSPTREQVKAMPELADELERPMMLLVSA 240 W+ KGVLKYHRT+ TTLNALIGAGFTLR VEEF+PT Q++AMP+L +ELERPMMLLV+A Sbjct: 195 WFAKGVLKYHRTLATTLNALIGAGFTLRRVEEFAPTAAQIEAMPDLEEELERPMMLLVAA 254 Query: 241 QR 242 ++ Sbjct: 255 RK 256 >ref|YP_917120.1| methyltransferase type 11 [Paracoccus denitrificans PD1222] gb|ABL71424.1| Methyltransferase type 11 [Paracoccus denitrificans PD1222] Length = 257 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/242 (73%), Positives = 201/242 (83%) Query: 1 MAQNIYDDPGFFAGYSQLPRQVRGLLGAPEWPAIRALLPDIAGKRAVDLGCGFGWVSRWM 60 MAQNIYD+P FFAGYSQLPRQV GL GAPEWPAIRA+LPD+A KR DLGCGFGW SRW Sbjct: 15 MAQNIYDNPDFFAGYSQLPRQVHGLDGAPEWPAIRAMLPDVAEKRVADLGCGFGWASRWF 74 Query: 61 REQGASDVLGVDLSQNMIARATAMTQDAAITYEIADLETLELPKSTFDLAYSALTFHYIR 120 REQGA+ V G DLS NMIARA A T D AI Y ADLE L+LP++ FDL YSAL FHY+ Sbjct: 75 REQGAASVAGYDLSHNMIARARADTSDPAIDYRNADLEVLDLPQAVFDLVYSALAFHYVA 134 Query: 121 DFDRLARMLYRALVPEGHLVFTIEHPIYMAAAHPDWGQDEDGRKTWPVNRYFIEGERRTD 180 DFDRL RM+++AL P G LVFTIEHPI+MAAAHP W DEDGRKTWPVN Y +EGERRTD Sbjct: 135 DFDRLIRMIHKALAPGGDLVFTIEHPIFMAAAHPHWTLDEDGRKTWPVNGYSVEGERRTD 194 Query: 181 WYVKGVLKYHRTIGTTLNALIGAGFTLRHVEEFSPTREQVKAMPELADELERPMMLLVSA 240 W+ KGVLKYHRT+ TTLN LIGAGF LR V+EF+PT Q++AMP LA+ELERPMMLLV+A Sbjct: 195 WFAKGVLKYHRTLATTLNTLIGAGFALRRVQEFAPTAAQIEAMPVLAEELERPMMLLVAA 254 Query: 241 QR 242 ++ Sbjct: 255 RK 256 >ref|ZP_05742768.1| methyltransferase type 11 [Silicibacter sp. TrichCH4B] gb|EEW56927.1| methyltransferase type 11 [Silicibacter sp. TrichCH4B] Length = 243 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/242 (73%), Positives = 203/242 (83%) Query: 1 MAQNIYDDPGFFAGYSQLPRQVRGLLGAPEWPAIRALLPDIAGKRAVDLGCGFGWVSRWM 60 MAQNIYD+P FF+GYSQLPRQV+GL GAPEWPAIRALLP++ GKR DLGCGFGW SRW Sbjct: 1 MAQNIYDNPDFFSGYSQLPRQVQGLDGAPEWPAIRALLPELTGKRVADLGCGFGWASRWF 60 Query: 61 REQGASDVLGVDLSQNMIARATAMTQDAAITYEIADLETLELPKSTFDLAYSALTFHYIR 120 R QGA VLG+DLSQNMI RA A T D+AITY IADL+ LELP++ FDL YSALTFHY++ Sbjct: 61 RAQGADRVLGLDLSQNMIDRAQADTSDSAITYRIADLDRLELPETAFDLIYSALTFHYVQ 120 Query: 121 DFDRLARMLYRALVPEGHLVFTIEHPIYMAAAHPDWGQDEDGRKTWPVNRYFIEGERRTD 180 DF+RL RM++ AL G LVFTIEHPI+MAAAHP W +DEDGR TWPVN Y EGERRTD Sbjct: 121 DFERLIRMIHAALSAGGDLVFTIEHPIFMAAAHPHWIEDEDGRNTWPVNGYSNEGERRTD 180 Query: 181 WYVKGVLKYHRTIGTTLNALIGAGFTLRHVEEFSPTREQVKAMPELADELERPMMLLVSA 240 W+ KGVLK+HRT+ TT+N LI AGFTLR VEEF+P EQ+ AMPELA+ELERPMML+VSA Sbjct: 181 WFAKGVLKHHRTLATTINTLINAGFTLRRVEEFAPAPEQIAAMPELAEELERPMMLMVSA 240 Query: 241 QR 242 + Sbjct: 241 YK 242