BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0028.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774667.1| DNA polymerase beta family protein [Bradyrhizob...   186   9e-46
ref|NP_771879.1| hypothetical protein blr5239 [Bradyrhizobium ja...   159   1e-37
ref|ZP_01046724.1| putative DNA polymerase beta family protein [...   150   5e-35
ref|ZP_07082519.1| DNA-directed DNA polymerase II [Sphingobacter...   110   9e-23
ref|ZP_07719844.1| PHP domain protein [Algoriphagus sp. PR1] >gi...   109   2e-22

>ref|NP_774667.1| DNA polymerase beta family protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC53292.1| blr8027 [Bradyrhizobium japonicum USDA 110]
          Length = 559

 Score =  186 bits (473), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query: 27  RACAKHDVVVEINAHPWRLDLDWRWHQAALEFGCMLSINPDAHSIPELDHMHWGVQMARK 86
           RACAKHDVVVEINAHPWRLDLDWRWHQAAL+FGCMLSINPDAHSIPELDHMHWGV MARK
Sbjct: 468 RACAKHDVVVEINAHPWRLDLDWRWHQAALDFGCMLSINPDAHSIPELDHMHWGVLMARK 527

Query: 87  GGVPTDRVLNAMKLSEITRYLRQNRRSLARAA 118
           GGVP +RVLNAM LSEITRYLRQ RRSL+RAA
Sbjct: 528 GGVPAERVLNAMSLSEITRYLRQKRRSLSRAA 559


>ref|NP_771879.1| hypothetical protein blr5239 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50504.1| blr5239 [Bradyrhizobium japonicum USDA 110]
          Length = 111

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 77/83 (92%)

Query: 36  VEINAHPWRLDLDWRWHQAALEFGCMLSINPDAHSIPELDHMHWGVQMARKGGVPTDRVL 95
             INAHPWRLDLDWRWHQAAL+FGCMLSINPDAHSIPELDHMHWGV+MARKGG+P DRVL
Sbjct: 29  CSINAHPWRLDLDWRWHQAALDFGCMLSINPDAHSIPELDHMHWGVEMARKGGIPADRVL 88

Query: 96  NAMKLSEITRYLRQNRRSLARAA 118
           NAM L EITRYLRQ RRSLARAA
Sbjct: 89  NAMTLPEITRYLRQKRRSLARAA 111


>ref|ZP_01046724.1| putative DNA polymerase beta family protein [Nitrobacter sp.
           Nb-311A]
 gb|EAQ35277.1| putative DNA polymerase beta family protein [Nitrobacter sp.
           Nb-311A]
          Length = 539

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 75/90 (83%)

Query: 27  RACAKHDVVVEINAHPWRLDLDWRWHQAALEFGCMLSINPDAHSIPELDHMHWGVQMARK 86
           R CAK+ V +EINAHPWRLDLDWRWH+ ALE GC+ SINPDAHSIPELDHMHWGV+MARK
Sbjct: 434 RVCAKYGVAIEINAHPWRLDLDWRWHEKALELGCIFSINPDAHSIPELDHMHWGVEMARK 493

Query: 87  GGVPTDRVLNAMKLSEITRYLRQNRRSLAR 116
           GGV  DRVLNAM L ++  +L + +R LAR
Sbjct: 494 GGVSADRVLNAMTLPKLIAHLSKRKRGLAR 523


>ref|ZP_07082519.1| DNA-directed DNA polymerase II [Sphingobacterium spiritivorum ATCC
           33861]
 gb|EFK57778.1| DNA-directed DNA polymerase II [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 560

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 4/103 (3%)

Query: 17  QSGRPLDPRX--RACAKHDVVVEINAHPWRLDLDWRWHQAALEFGCMLSINPDAHSIPEL 74
           +SG PLD +    ACA + VV+EINA+P RLDLDWRWH+ A+E G +LSINPDAH    L
Sbjct: 459 RSGYPLDFKKIIDACAANQVVIEINANPLRLDLDWRWHRYAIEKGVLLSINPDAHRTEGL 518

Query: 75  DHMHWGVQMARKGGVPTDRVLNAMKLSEITRYLRQNRRSLARA 117
             MH+G+ +ARKGGV  +  LNA  ++EI+ +     R +AR 
Sbjct: 519 LDMHYGIYVARKGGVSAENCLNARSVTEISEFF--TNRKIARG 559


>ref|ZP_07719844.1| PHP domain protein [Algoriphagus sp. PR1]
 gb|EAZ80554.1| PHP domain protein [Algoriphagus sp. PR1]
          Length = 555

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 17  QSGRPLDPRX--RACAKHDVVVEINAHPWRLDLDWRWHQAALEFGCMLSINPDAHSIPEL 74
           ++G P+D R    ACAK++VV+EINA+PWRLDLDWRW + AL+ G  LSINPDAH I   
Sbjct: 451 RAGYPIDHRIIIDACAKNNVVIEINANPWRLDLDWRWVRYALDQGVKLSINPDAHEIDGY 510

Query: 75  DHMHWGVQMARKGGVPTDRVLNAMKLSEITRYLRQNRRSLA 115
             M +GV + RKGG+  +   N+M LSEI +Y    +++++
Sbjct: 511 ADMKYGVLVGRKGGLGKEMTFNSMSLSEIEKYFSDRKKAIS 551