BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0021.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774673.1| hypothetical protein bll8033 [Bradyrhizobium ja...   115   2e-24
ref|ZP_01046729.1| hypothetical protein NB311A_13236 [Nitrobacte...   110   7e-23
ref|ZP_01048556.1| hypothetical protein NB311A_00350 [Nitrobacte...   110   1e-22
ref|YP_579036.1| hypothetical protein Nham_3878 [Nitrobacter ham...   103   1e-20
ref|YP_534440.1| hypothetical protein RPC_4599 [Rhodopseudomonas...    69   2e-10

>ref|NP_774673.1| hypothetical protein bll8033 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53298.1| bll8033 [Bradyrhizobium japonicum USDA 110]
          Length = 138

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 72/87 (82%)

Query: 1  MSIERDIKTSQSEFREISTLLGDAMSQFAKLFQNEIDLAKAEVGDKLQKIGGALGLIIGG 60
          MSIE DI+T +S+   IS L+GDA+ Q  KLFQNE+DLAKAE+G+K+Q++G A GL+ GG
Sbjct: 1  MSIEHDIETGKSDLSNISGLVGDALVQVTKLFQNEVDLAKAELGEKVQRLGKAFGLLAGG 60

Query: 61 AVLVIPAIVMALFALSAALISAGXSPP 87
          AVLVIPAIVMALFAL++ALI+ G SP 
Sbjct: 61 AVLVIPAIVMALFALASALINGGWSPT 87


>ref|ZP_01046729.1| hypothetical protein NB311A_13236 [Nitrobacter sp. Nb-311A]
 gb|EAQ35282.1| hypothetical protein NB311A_13236 [Nitrobacter sp. Nb-311A]
          Length = 131

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 70/79 (88%)

Query: 9  TSQSEFREISTLLGDAMSQFAKLFQNEIDLAKAEVGDKLQKIGGALGLIIGGAVLVIPAI 68
          +++S+F  ISTLL DA+SQFAKLFQNE+DLAKAE+ +K+Q++G A+G +  GAVL+IPA+
Sbjct: 2  STRSDFGTISTLLSDALSQFAKLFQNEVDLAKAELAEKVQRVGWAVGFLAAGAVLIIPAL 61

Query: 69 VMALFALSAALISAGXSPP 87
          VMALFALSAAL++AG SPP
Sbjct: 62 VMALFALSAALMAAGWSPP 80


>ref|ZP_01048556.1| hypothetical protein NB311A_00350 [Nitrobacter sp. Nb-311A]
 gb|EAQ33497.1| hypothetical protein NB311A_00350 [Nitrobacter sp. Nb-311A]
          Length = 138

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 69/87 (79%)

Query: 1  MSIERDIKTSQSEFREISTLLGDAMSQFAKLFQNEIDLAKAEVGDKLQKIGGALGLIIGG 60
          MSI  DI+TSQ++ R I  L G+A+SQFAKLFQNEIDLA AE+G+K Q++ GA+  I  G
Sbjct: 1  MSIPNDIQTSQNDLRTILKLFGNALSQFAKLFQNEIDLANAELGEKAQEVIGAVSFIAAG 60

Query: 61 AVLVIPAIVMALFALSAALISAGXSPP 87
          A+LV PA+VM LFALSAALI++G S P
Sbjct: 61 AILVFPAVVMVLFALSAALIASGWSEP 87


>ref|YP_579036.1| hypothetical protein Nham_3878 [Nitrobacter hamburgensis X14]
 gb|ABE64576.1| protein of unknown function DUF1469 [Nitrobacter hamburgensis
          X14]
          Length = 131

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 66/79 (83%)

Query: 9  TSQSEFREISTLLGDAMSQFAKLFQNEIDLAKAEVGDKLQKIGGALGLIIGGAVLVIPAI 68
          ++QS+   IS LLGDA+SQFAKLFQNE+DLA+AE+G+K+Q++  A+G +   AVLVIPA+
Sbjct: 2  STQSDLGTISNLLGDALSQFAKLFQNEVDLARAELGEKVQQVAWAVGWLAAAAVLVIPAL 61

Query: 69 VMALFALSAALISAGXSPP 87
          VMALFALSAAL+ +G S P
Sbjct: 62 VMALFALSAALMESGWSQP 80


>ref|YP_534440.1| hypothetical protein RPC_4599 [Rhodopseudomonas palustris BisB18]
 gb|ABD90121.1| protein of unknown function DUF1469 [Rhodopseudomonas palustris
          BisB18]
          Length = 130

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 49/72 (68%)

Query: 15 REISTLLGDAMSQFAKLFQNEIDLAKAEVGDKLQKIGGALGLIIGGAVLVIPAIVMALFA 74
          R I  L  DA  Q AKL  NEIDLA+AE  +KL +IG A  +I  GAV+ +PA+V+ LF+
Sbjct: 7  RSIPELFSDAFGQLAKLLSNEIDLARAEFSEKLGQIGRAGAMIGAGAVIFMPALVLILFS 66

Query: 75 LSAALISAGXSP 86
          ++AAL  AG +P
Sbjct: 67 IAAALTQAGFTP 78