BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0227.0020.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774672.1| hypothetical protein bll8032 [Bradyrhizobium ja... 269 3e-70 ref|YP_579037.1| hypothetical protein Nham_3879 [Nitrobacter ham... 236 3e-60 ref|YP_571655.1| hypothetical protein Nham_4200 [Nitrobacter ham... 162 5e-38 ref|ZP_01046730.1| hypothetical protein NB311A_13241 [Nitrobacte... 159 4e-37 ref|ZP_01048557.1| hypothetical protein NB311A_00355 [Nitrobacte... 158 5e-37 >ref|NP_774672.1| hypothetical protein bll8032 [Bradyrhizobium japonicum USDA 110] dbj|BAC53297.1| bll8032 [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 139/242 (57%), Positives = 183/242 (75%), Gaps = 1/242 (0%) Query: 1 MSSTKTGFIDNLVAAAKDNPLAAALIGGGALWLLAGDQRLKTVARSAAEAVEPVADIGTS 60 MS +TGF D+L+AAA++NPL+AALIGGGALWL+ GD +LK ARSAA V D G + Sbjct: 1 MSGPQTGFFDSLLAAARENPLSAALIGGGALWLMVGDAKLKGAARSAATVASDVVDAGAT 60 Query: 61 AFRSAASAIKQTEAPPTAPEMDNESARGGGESLPGATAALSDTVSQAAGSVRDRFDEGVA 120 R+AAS +++T APPTAP+MD+E + G ++ A + ++S A SVRDRFDEGVA Sbjct: 61 NLRAAASGLQRTAAPPTAPDMDHEGS-GSRGTVDTAADTAAGSMSDATDSVRDRFDEGVA 119 Query: 121 FAQEQFSKLGNPLPNKDTVNSAKSSLTDMLERQPLVLGIVGVAVGAAVAGAFRASDMENK 180 +A+EQF++ G+PLP DT+ A+SS+ D++E+QPLV+G VG+A+GAA+A AFR S ME+ Sbjct: 120 YAREQFAQRGSPLPTADTLAKAQSSIGDVMEKQPLVIGAVGLAIGAALASAFRTSQMEDN 179 Query: 181 YIGEVSDNLKADLDRRAGAVSRALREASDTVVAEIGDSGAEVVDRVRQAGMDAAAAARAE 240 YIGEVSD +K DL RR AVS+ALREA+DT+VAE D GAE VDR+RQAG DA AA+ + Sbjct: 180 YIGEVSDEVKDDLSRRGSAVSQALREAADTLVAEASDMGAEAVDRMRQAGTDATQAAKEK 239 Query: 241 VK 242 K Sbjct: 240 TK 241 >ref|YP_579037.1| hypothetical protein Nham_3879 [Nitrobacter hamburgensis X14] gb|ABE64577.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 235 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/233 (54%), Positives = 171/233 (73%), Gaps = 4/233 (1%) Query: 6 TGFIDNLVAAAKDNPLAAALIGGGALWLLAGDQRLKTVARSAAEAVEPVADIGTSAFRSA 65 + F+DNL A ++NPL+AALIGGGALWLL GD+RLK A S + A P+ADIG + RS+ Sbjct: 2 SNFLDNLKEAVRENPLSAALIGGGALWLLIGDERLKNAAASTSAAPAPLADIGAN-LRSS 60 Query: 66 ASAIKQTEAPPTAPEMDNESARGGGESLPGATAALSDTVSQAAGSVRDRFDEGVAFAQEQ 125 + I T +PPTAPE+D+E + GG L AT+A S+ S AA +++DR EG+ +A+E Sbjct: 61 ETKI--TNSPPTAPEIDHE-LQPGGHRLREATSAASEATSGAANAIKDRLGEGITYARES 117 Query: 126 FSKLGNPLPNKDTVNSAKSSLTDMLERQPLVLGIVGVAVGAAVAGAFRASDMENKYIGEV 185 FSK LP K+T+ +SSL+D+LERQPLVLG++G+AVG A+A AF ASD+EN+++GEV Sbjct: 118 FSKATEALPPKETMAKVQSSLSDLLERQPLVLGVIGLAVGVAIASAFTASDLENEWVGEV 177 Query: 186 SDNLKADLDRRAGAVSRALREASDTVVAEIGDSGAEVVDRVRQAGMDAAAAAR 238 SD +K DL RAGAVS + REASDT+ AE+ D G+E VDR+ + G +A AAR Sbjct: 178 SDRVKEDLKARAGAVSHSAREASDTLKAELSDIGSEAVDRLHETGRNAVNAAR 230 >ref|YP_571655.1| hypothetical protein Nham_4200 [Nitrobacter hamburgensis X14] gb|ABE64823.1| hypothetical protein Nham_4200 [Nitrobacter hamburgensis X14] Length = 281 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/136 (58%), Positives = 108/136 (79%) Query: 105 SQAAGSVRDRFDEGVAFAQEQFSKLGNPLPNKDTVNSAKSSLTDMLERQPLVLGIVGVAV 164 S AA +++DRF EGV +A+E FS+ + LP K+T+ +SSL+D+LERQPLVLG +G+AV Sbjct: 143 SDAANAIKDRFGEGVTYARESFSEAADALPPKETMAKVQSSLSDLLERQPLVLGAIGLAV 202 Query: 165 GAAVAGAFRASDMENKYIGEVSDNLKADLDRRAGAVSRALREASDTVVAEIGDSGAEVVD 224 G AVAGAF ASD+EN+++GEVSD +K DL RAGAVS ++REASDT+ AE+GD G+E VD Sbjct: 203 GVAVAGAFTASDLENEWVGEVSDRVKEDLKARAGAVSHSVREASDTLKAELGDIGSEAVD 262 Query: 225 RVRQAGMDAAAAARAE 240 R+R+ G +A AAR + Sbjct: 263 RLRETGRNAMNAARGK 278 >ref|ZP_01046730.1| hypothetical protein NB311A_13241 [Nitrobacter sp. Nb-311A] gb|EAQ35283.1| hypothetical protein NB311A_13241 [Nitrobacter sp. Nb-311A] Length = 232 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 155/232 (66%), Gaps = 9/232 (3%) Query: 8 FIDNLVAAAKDNPLAAALIGGGALWLLAGDQRLKTVARSAAEAV-EPVADIGTSAFRSAA 66 F+DNL A NPL+A LIGGGALWLL G++RL++ A S + A P AD T+ RS+A Sbjct: 4 FLDNLKEAVGANPLSATLIGGGALWLLLGNERLRSAAASVSAATARPRADTRTN-LRSSA 62 Query: 67 SAIKQTEAPPTAPEMDNESARGGGESLPGATAALSDTVSQAAGSVRDRFDEGVAFAQEQF 126 + P TA EMD + A G +L + +S S AA +++DR EG +A+E F Sbjct: 63 PEFANS--PQTAREMD-QGAVHGVHTL----SEISSAASGAANTIKDRLGEGATYARESF 115 Query: 127 SKLGNPLPNKDTVNSAKSSLTDMLERQPLVLGIVGVAVGAAVAGAFRASDMENKYIGEVS 186 SK LP K+T+ +SS+++++ERQPLVLG +G+AVG AVA AF ASD+EN++IGEVS Sbjct: 116 SKAAEVLPPKETIAKVQSSISNLIERQPLVLGAIGLAVGVAVASAFTASDLENEWIGEVS 175 Query: 187 DNLKADLDRRAGAVSRALREASDTVVAEIGDSGAEVVDRVRQAGMDAAAAAR 238 D +K DL+ RAG+VS ++REASDT+ A D G+E DR+++ G + AAR Sbjct: 176 DRVKEDLEARAGSVSHSVREASDTLKATFRDIGSEAADRLKETGRNVLDAAR 227 >ref|ZP_01048557.1| hypothetical protein NB311A_00355 [Nitrobacter sp. Nb-311A] gb|EAQ33498.1| hypothetical protein NB311A_00355 [Nitrobacter sp. Nb-311A] Length = 238 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/244 (46%), Positives = 164/244 (67%), Gaps = 6/244 (2%) Query: 1 MSSTKTGFIDNLVAAAKDNPLAAALIGGGALWLLAGDQRLKTVARSAAEAVEPVADIGTS 60 MS+ KTGF DNLVAAA++NPLAAALIG GA L G+++LK AR+A A +D+ Sbjct: 1 MSNKKTGFFDNLVAAARENPLAAALIGAGAFCLFTGNEKLKDAARAATAAAP-ASDLRAL 59 Query: 61 AFRSAASAIKQTEAPPTAPEMDNESARGGGESLPGATAALSDTVSQAAGSVRDRFDEGVA 120 RS S +++ APP AP++++E + G+ L A +A S +S +A ++DR+ EG Sbjct: 60 DPRSTLSTHQRSAAPPLAPKLNDEGSFHVGDKLRDAGSAASHAISGSADKIKDRWHEGAN 119 Query: 121 FAQEQFSKLGNPLPNKDTVNSAKSSLTDMLERQPLVLGIVGVAVGAAVAGAFRASDMENK 180 + +E + P ++ + + +SSL +LERQPL+LGI+G+A GAAVAGAFR SD+EN Sbjct: 120 YVRENVGR-----PGEEALKTVQSSLGGLLERQPLMLGILGLAAGAAVAGAFRTSDLEND 174 Query: 181 YIGEVSDNLKADLDRRAGAVSRALREASDTVVAEIGDSGAEVVDRVRQAGMDAAAAARAE 240 + G VSD +KA L+ RAGAVS+ L EA+D + E+ ++GA+VV+ V+Q AA AAR Sbjct: 175 WAGAVSDEVKAHLNTRAGAVSQGLHEAADKLQTELRETGADVVELVKQTATGAANAAREA 234 Query: 241 VKLP 244 +KLP Sbjct: 235 MKLP 238