BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0016.p         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004675291.1| major cold shock protein [Hyphomicrobium sp....   112   1e-23
ref|YP_533559.1| cold-shock DNA-binding domain-containing protei...   111   4e-23
ref|NP_949010.1| cold-shock DNA-binding domain-containing protei...   110   6e-23
ref|YP_485410.1| cold-shock DNA-binding domain-containing protei...   110   7e-23
ref|YP_782653.1| cold-shock DNA-binding domain-containing protei...   110   7e-23

>ref|YP_004675291.1| major cold shock protein [Hyphomicrobium sp. MC1]
 emb|CCB64717.1| major cold shock protein [Hyphomicrobium sp. MC1]
          Length = 69

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN+QKGFGFIQP +G NDVFVHISAVERAG+G LSEGQ +S+DVVADRR+GKS+A+N
Sbjct: 6  VKWFNSQKGFGFIQPEDGGNDVFVHISAVERAGLGNLSEGQKVSFDVVADRRSGKSSADN 65

Query: 61 LRA 63
          LRA
Sbjct: 66 LRA 68


>ref|YP_533559.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 58/64 (90%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN  KGFGFIQP +G NDVFVHISAVERAG+GTL EGQ +SY++VADRR+GKS+A+N
Sbjct: 6  VKWFNATKGFGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADN 65

Query: 61 LRAA 64
          LRAA
Sbjct: 66 LRAA 69


>ref|NP_949010.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 84

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 58/64 (90%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN  KG+GFIQP +G NDVFVHISAVERAG+GTL EGQ +SY++VADRR+GKS+A+N
Sbjct: 20 VKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADN 79

Query: 61 LRAA 64
          LRAA
Sbjct: 80 LRAA 83


>ref|YP_485410.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 ref|YP_570637.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB5]
 ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 ref|YP_001993165.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris TIE-1]
 gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
 gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
 gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 70

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 58/64 (90%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN  KG+GFIQP +G NDVFVHISAVERAG+GTL EGQ +SY++VADRR+GKS+A+N
Sbjct: 6  VKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADN 65

Query: 61 LRAA 64
          LRAA
Sbjct: 66 LRAA 69


>ref|YP_782653.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
 ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 ref|YP_004631681.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
 gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
 gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
 gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gb|AEI01865.1| cold shock protein CspA [Oligotropha carboxidovorans OM4]
 gb|AEI05440.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
          Length = 70

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 58/64 (90%)

Query: 1  VKWFNTQKGFGFIQPSNGSNDVFVHISAVERAGMGTLSEGQTLSYDVVADRRTGKSAAEN 60
          VKWFN  KG+GFIQP +G NDVFVHISAVERAG+GTL EGQ +SY++VADRR+GKS+A+N
Sbjct: 6  VKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADN 65

Query: 61 LRAA 64
          LRAA
Sbjct: 66 LRAA 69