BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0227.0013.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768884.1| cAMP-regulatory protein [Bradyrhizobium japonic... 349 2e-94 ref|YP_534252.1| Crp/FNR family transcriptional regulator [Rhodo... 336 2e-90 ref|YP_781752.1| Crp/FNR family transcriptional regulator [Rhodo... 303 2e-80 ref|YP_782565.1| Crp/FNR family transcriptional regulator [Rhodo... 299 3e-79 ref|YP_782283.1| cyclic nucleotide-binding protein [Rhodopseudom... 280 8e-74 >ref|NP_768884.1| cAMP-regulatory protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47509.1| bll2244 [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 173/223 (77%), Positives = 200/223 (89%) Query: 3 KSTKKAFDPQAFLAKVGAGKAILKFERSQHVFTQGDVADAVFYIQKGRVKLTVVSEQGKE 62 K+ K +FDP+ FLAKVG GKAILKF+++Q VF+QGD AD VFYIQKGR+K+ VVSEQGKE Sbjct: 3 KAAKSSFDPKLFLAKVGEGKAILKFDKNQVVFSQGDAADTVFYIQKGRIKVLVVSEQGKE 62 Query: 63 AVVGILEPGQFFGEGCLNGHPLRIATATAVEECMITSISKEAMIHTVQSEPKFSELFMAY 122 AVVGI+EPGQFFGEGCLNGHPLRI+T A+E+C++TSI+K AM+ ++ EPKFSELFM Y Sbjct: 63 AVVGIMEPGQFFGEGCLNGHPLRISTTVAMEQCLVTSIAKSAMLAILKGEPKFSELFMEY 122 Query: 123 LLTRNSRIEEDLIDQLFNSSEKRLARLLLLLAHFGTEGTTQPILIDISQETLAEMIGTTR 182 LL+RNSRIEEDLIDQLFNSSEKRLARLLLLLA+FG +G TQPI +SQETLAEMIGTTR Sbjct: 123 LLSRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKDGATQPITAQVSQETLAEMIGTTR 182 Query: 183 SRVSFFMNKFRKLGLISYNGKIEVHNSLLGAVLHEKPEIERDD 225 SRVSFFMNKFRKLG I+YNGKIEVH+SLL AVL++KPEI RDD Sbjct: 183 SRVSFFMNKFRKLGFITYNGKIEVHSSLLNAVLYDKPEIVRDD 225 >ref|YP_534252.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD89933.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisB18] Length = 225 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 172/222 (77%), Positives = 196/222 (88%) Query: 3 KSTKKAFDPQAFLAKVGAGKAILKFERSQHVFTQGDVADAVFYIQKGRVKLTVVSEQGKE 62 ++ K FD +AFLA VGAGKAIL+F ++Q V+ QGD A+AVFYIQKGR+KLTV+SEQGKE Sbjct: 4 RAVKDTFDSKAFLAGVGAGKAILEFRKNQTVYVQGDAANAVFYIQKGRIKLTVLSEQGKE 63 Query: 63 AVVGILEPGQFFGEGCLNGHPLRIATATAVEECMITSISKEAMIHTVQSEPKFSELFMAY 122 AVV I+EPGQFFGEGCLNGH R+AT A+EE ++TSI+KEAM+ T+ +PKFSELFMAY Sbjct: 64 AVVAIMEPGQFFGEGCLNGHSHRMATTVAMEESLVTSITKEAMLRTLHDQPKFSELFMAY 123 Query: 123 LLTRNSRIEEDLIDQLFNSSEKRLARLLLLLAHFGTEGTTQPILIDISQETLAEMIGTTR 182 LLTRNSRIEEDLIDQLFNSSEKRLARLLLLLA+FG EG QPI ISQETLAEMIGTTR Sbjct: 124 LLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKEGNPQPITPHISQETLAEMIGTTR 183 Query: 183 SRVSFFMNKFRKLGLISYNGKIEVHNSLLGAVLHEKPEIERD 224 SRVSFFMNKFRKLGLISYNGKIEV++SLL AVLH+KP IER+ Sbjct: 184 SRVSFFMNKFRKLGLISYNGKIEVNSSLLNAVLHDKPHIERE 225 >ref|YP_781752.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ06772.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 153/219 (69%), Positives = 188/219 (85%) Query: 9 FDPQAFLAKVGAGKAILKFERSQHVFTQGDVADAVFYIQKGRVKLTVVSEQGKEAVVGIL 68 FD AFL KVGAGK I KF+++ +F+QGD A ++++IQKGRVKLTVVS+QGKEAVVG+L Sbjct: 16 FDMAAFLEKVGAGKTIAKFKKNDVIFSQGDAAASIYFIQKGRVKLTVVSKQGKEAVVGVL 75 Query: 69 EPGQFFGEGCLNGHPLRIATATAVEECMITSISKEAMIHTVQSEPKFSELFMAYLLTRNS 128 E GQFFGE CL+G R+AT +A+ EC++ SIS+ AM+ +++EPKFS F++YLL+RNS Sbjct: 76 EAGQFFGEACLHGSTKRVATTSALGECVVISISRSAMLAALKNEPKFSARFISYLLSRNS 135 Query: 129 RIEEDLIDQLFNSSEKRLARLLLLLAHFGTEGTTQPILIDISQETLAEMIGTTRSRVSFF 188 RIEEDLIDQLFNSSE+RLARLLLLLAHFG EGT+QPI I+ISQE LA+MIGTTRSRVSFF Sbjct: 136 RIEEDLIDQLFNSSERRLARLLLLLAHFGKEGTSQPIDIEISQEALADMIGTTRSRVSFF 195 Query: 189 MNKFRKLGLISYNGKIEVHNSLLGAVLHEKPEIERDDDL 227 MNKFR+LGLISYNGKI V+++LL AVLHEKP + DD + Sbjct: 196 MNKFRRLGLISYNGKIHVNHALLNAVLHEKPSLRADDKV 234 >ref|YP_782565.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ07585.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisA53] Length = 232 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 152/224 (67%), Positives = 182/224 (81%) Query: 3 KSTKKAFDPQAFLAKVGAGKAILKFERSQHVFTQGDVADAVFYIQKGRVKLTVVSEQGKE 62 K FD FLAKVG GKA+LKF+++ +F+QGD AD++FYIQ G+VKL VVSE GKE Sbjct: 3 KGMTSPFDANDFLAKVGDGKAVLKFKKNDVIFSQGDHADSIFYIQNGKVKLIVVSEHGKE 62 Query: 63 AVVGILEPGQFFGEGCLNGHPLRIATATAVEECMITSISKEAMIHTVQSEPKFSELFMAY 122 AVV ILE GQFFGEGCLNGH RI++ A+ + ++TSIS+ M+ +Q+ P FS LFM Y Sbjct: 63 AVVAILEAGQFFGEGCLNGHLTRISSTMAMTDSLVTSISRTGMLAALQAHPTFSTLFMTY 122 Query: 123 LLTRNSRIEEDLIDQLFNSSEKRLARLLLLLAHFGTEGTTQPILIDISQETLAEMIGTTR 182 LL RNSRIEEDLIDQLFNSSE+RLARLLL+LA+FG +G+ QPI ++ISQETLAEMIGTTR Sbjct: 123 LLNRNSRIEEDLIDQLFNSSERRLARLLLILANFGKDGSQQPIDVEISQETLAEMIGTTR 182 Query: 183 SRVSFFMNKFRKLGLISYNGKIEVHNSLLGAVLHEKPEIERDDD 226 SRVS+FMNKFRKLG ISYNGKI V+NSLL AVLH+KP I + D Sbjct: 183 SRVSYFMNKFRKLGFISYNGKIHVNNSLLDAVLHDKPTIRAEGD 226 >ref|YP_782283.1| cyclic nucleotide-binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ07303.1| cyclic nucleotide-binding protein [Rhodopseudomonas palustris BisA53] Length = 227 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 143/221 (64%), Positives = 175/221 (79%) Query: 7 KAFDPQAFLAKVGAGKAILKFERSQHVFTQGDVADAVFYIQKGRVKLTVVSEQGKEAVVG 66 ++FD AFL + G GK +LK +++ V+ QGD A+AV++I+KGRVKL VVS+ GKEAVV Sbjct: 5 RSFDITAFLQRFGDGKTVLKLAKNKIVYAQGDAAEAVYFIEKGRVKLNVVSKHGKEAVVA 64 Query: 67 ILEPGQFFGEGCLNGHPLRIATATAVEECMITSISKEAMIHTVQSEPKFSELFMAYLLTR 126 ILEPGQFFGEGCLNG RIATA+ + + I +IS+ AMI +++E +FS+ FM +LL R Sbjct: 65 ILEPGQFFGEGCLNGQTTRIATASTISDATIAAISRSAMIAALRNESQFSDYFMTWLLNR 124 Query: 127 NSRIEEDLIDQLFNSSEKRLARLLLLLAHFGTEGTTQPILIDISQETLAEMIGTTRSRVS 186 N RIEEDLIDQLFN SE+RLARLLLLLAHFG +G+ QPI I+I Q TLA+MIGTTRSRVS Sbjct: 125 NIRIEEDLIDQLFNFSERRLARLLLLLAHFGKDGSPQPIDIEIDQGTLADMIGTTRSRVS 184 Query: 187 FFMNKFRKLGLISYNGKIEVHNSLLGAVLHEKPEIERDDDL 227 FFMNKFRKLG ISYNGKI VHN+LL AVLH+ P D+ Sbjct: 185 FFMNKFRKLGFISYNGKIHVHNALLNAVLHDMPSTRNRSDV 225