BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0002.p         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_780188.1| hypothetical protein RPE_1256 [Rhodopseudomonas...    67   1e-09
ref|YP_531090.1| hypothetical protein RPC_1208 [Rhodopseudomonas...    65   4e-09
ref|ZP_08629982.1| hypothetical protein CSIRO_3083 [Bradyrhizobi...    37   0.72 

>ref|YP_780188.1| hypothetical protein RPE_1256 [Rhodopseudomonas palustris BisA53]
 gb|ABJ05208.1| hypothetical protein RPE_1256 [Rhodopseudomonas palustris BisA53]
          Length = 85

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 41/52 (78%)

Query: 1  MPRGKMKHLQLVAGRIYNLLKKEAAYGPNVQHLEDFRAAQKLESSLDRLPSE 52
          MP G+ K +Q   GR+Y+LL +EA++GPN++HL+DFRAA+K E +LDR  ++
Sbjct: 22 MPFGRGKRMQRAIGRVYHLLSREASFGPNIEHLDDFRAARKAEDALDRCSTK 73


>ref|YP_531090.1| hypothetical protein RPC_1208 [Rhodopseudomonas palustris BisB18]
 gb|ABD86771.1| hypothetical protein RPC_1208 [Rhodopseudomonas palustris BisB18]
          Length = 68

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 1  MPRGKMKHLQLVAGRIYNLLKKEAAYGPNVQHLEDFRAAQKLESSL 46
          MP G+ K LQ V  RIY+LL KEAAYGPN+ H+ DFRAA+KLE +L
Sbjct: 22 MPFGRSKRLQRVIARIYHLLSKEAAYGPNLDHMADFRAAEKLEKTL 67


>ref|ZP_08629982.1| hypothetical protein CSIRO_3083 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP07351.1| hypothetical protein CSIRO_3083 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 73

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 5/44 (11%)

Query: 3  RGKMKHLQLVAGRIYNLLKKEAAYGPNVQHLEDFRAAQKLESSL 46
          R K++H+    G IY+LL K+ AY  N++ LED+R A++ E  L
Sbjct: 28 RSKLRHI----GSIYHLLAKQGAYS-NIEFLEDYRVAKRAEEHL 66