BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0226.0012.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773887.1| cytoplasmic protein [Bradyrhizobium japonicum U... 465 e-129 ref|YP_001203569.1| hypothetical protein BRADO1440 [Bradyrhizobi... 442 e-122 ref|YP_001242471.1| hypothetical protein BBta_6665 [Bradyrhizobi... 434 e-120 ref|YP_570819.1| hypothetical protein RPD_3697 [Rhodopseudomonas... 426 e-117 ref|YP_001990802.1| hypothetical protein Rpal_1800 [Rhodopseudom... 424 e-117 >ref|NP_773887.1| cytoplasmic protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52512.1| hypothetical cytosolic protein [Bradyrhizobium japonicum USDA 110] Length = 283 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/284 (80%), Positives = 253/284 (89%), Gaps = 1/284 (0%) Query: 1 MSDKLDLDHLRQWIGKTTEASDVVTKYLVMGLRATLFQEIGEPKAGDAAPWTTHWCLAQP 60 M+ KLD+DHLRQWIG++ EA+D+VT LVMGLRATLFQE+GEPK GDAAP+T HWCLAQP Sbjct: 1 MTGKLDIDHLRQWIGRSAEATDIVTAQLVMGLRATLFQEVGEPKKGDAAPFTVHWCLAQP 60 Query: 61 VFPMSQLGPDGHPTRGGFLPPVPLPRRMWAGGELEFFDSLRIGDEAKRTSKIADVTVKSG 120 VFPMS LGPDGHPTRGGFLPPVPLPRRMWAGGE+EF L +GDE+ RTS+IADVTVK+G Sbjct: 61 VFPMSMLGPDGHPTRGGFLPPVPLPRRMWAGGEIEFLQPLCVGDESTRTSRIADVTVKTG 120 Query: 121 STGTLCFVSVNHEVTTSRGLAVRERQDIVYREMTSTQGAAPAKAPPPPPVAQHRESHVSD 180 STGTLCFV+V H VT+ RG+A+RERQDIVYREMTS A AKAPPPPP AQHRE+HVSD Sbjct: 121 STGTLCFVAVEHTVTSPRGVAIRERQDIVYREMTSGA-PAGAKAPPPPPKAQHRETHVSD 179 Query: 181 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQASFIVEFAARLRGGKPPKKL 240 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQA+ I+E AA+LRGGK PKK Sbjct: 180 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQAALIIEMAAKLRGGKAPKKF 239 Query: 241 AYRGVQPLFEGSEFSINASDKNGGMELWTANAEGQPTMKGTATW 284 YRG+QPLFEG+EFSINA+D MELWTANAEGQPTMKGTA W Sbjct: 240 TYRGLQPLFEGTEFSINANDGGESMELWTANAEGQPTMKGTAVW 283 >ref|YP_001203569.1| hypothetical protein BRADO1440 [Bradyrhizobium sp. ORS 278] emb|CAL75332.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 284 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/284 (77%), Positives = 247/284 (86%), Gaps = 2/284 (0%) Query: 1 MSDKLDLDHLRQWIGKTTEASDVVTKYLVMGLRATLFQEIGEPKAGDAAPWTTHWCLAQP 60 M++ LDLDHLRQW+G++TEA+D+VT L GLRATLFQ+IGEP GD AP+T HWCL QP Sbjct: 3 MTESLDLDHLRQWVGRSTEATDIVTAQLTKGLRATLFQDIGEPATGDIAPYTVHWCLGQP 62 Query: 61 VFPMSQLGPDGHPTRGGFLPPVPLPRRMWAGGELEFFDSLRIGDEAKRTSKIADVTVKSG 120 VFP QLGPDGHPTRGGFLPPVPLPRRMWAGGE++F D LR+GD A R S I DVT+KSG Sbjct: 63 VFPHDQLGPDGHPTRGGFLPPVPLPRRMWAGGEVQFIDPLRVGDLASRVSTITDVTLKSG 122 Query: 121 STGTLCFVSVNHEVTTSRGLAVRERQDIVYREMTSTQGAAPAKAPPPPPVAQHRESHVSD 180 STG LCFV+V H V+T RG A+RERQDIVYR+M AA KAPPPPPVAQH E+HVSD Sbjct: 123 STGQLCFVAVEHVVSTPRGTAIRERQDIVYRDMGGAPAAA-PKAPPPPPVAQHSEAHVSD 181 Query: 181 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQASFIVEFAARLRGGKPPKKL 240 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQA+ +VEFAA+L+ GKPP K Sbjct: 182 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQAALLVEFAAKLK-GKPPAKF 240 Query: 241 AYRGVQPLFEGSEFSINASDKNGGMELWTANAEGQPTMKGTATW 284 AYRGVQPLFEGSEFS+NASD++GG+ELWTANAE QPTMKGTATW Sbjct: 241 AYRGVQPLFEGSEFSVNASDRDGGLELWTANAERQPTMKGTATW 284 >ref|YP_001242471.1| hypothetical protein BBta_6665 [Bradyrhizobium sp. BTAi1] gb|ABQ38565.1| hypothetical protein BBta_6665 [Bradyrhizobium sp. BTAi1] Length = 283 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/284 (75%), Positives = 242/284 (85%), Gaps = 3/284 (1%) Query: 1 MSDKLDLDHLRQWIGKTTEASDVVTKYLVMGLRATLFQEIGEPKAGDAAPWTTHWCLAQP 60 M+D+LDLDHLRQW+G++ EA+D+VT L GLRATLFQ+IGEP+ GD AP+T HWCL QP Sbjct: 3 MTDELDLDHLRQWVGRSAEATDIVTAQLTKGLRATLFQDIGEPQTGDIAPYTVHWCLGQP 62 Query: 61 VFPMSQLGPDGHPTRGGFLPPVPLPRRMWAGGELEFFDSLRIGDEAKRTSKIADVTVKSG 120 VFP QLGPDGHPTRGGFLPPVPLPRRMWAGGE++F D LR+GD A R S I DV++KSG Sbjct: 63 VFPHDQLGPDGHPTRGGFLPPVPLPRRMWAGGEVQFIDPLRVGDVATRVSTITDVSLKSG 122 Query: 121 STGTLCFVSVNHEVTTSRGLAVRERQDIVYREMTSTQGAAPAKAPPPPPVAQHRESHVSD 180 STG LCFV+V H V+T RG A+RERQDIVYR+M Q A+P PPPVAQH ESHVSD Sbjct: 123 STGQLCFVAVEHVVSTPRGTAIRERQDIVYRDMGGAQPASPKAP--PPPVAQHSESHVSD 180 Query: 181 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQASFIVEFAARLRGGKPPKKL 240 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQA+ +VEFAA L+ KPP K Sbjct: 181 PVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQAALLVEFAAGLK-RKPPAKF 239 Query: 241 AYRGVQPLFEGSEFSINASDKNGGMELWTANAEGQPTMKGTATW 284 AYRGVQPLFEGSEFS+NA+D++GG+ELW ANAE QPTMKGTA W Sbjct: 240 AYRGVQPLFEGSEFSVNANDRDGGLELWIANAERQPTMKGTAVW 283 >ref|YP_570819.1| hypothetical protein RPD_3697 [Rhodopseudomonas palustris BisB5] gb|ABE40918.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 291 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/285 (72%), Positives = 245/285 (85%), Gaps = 3/285 (1%) Query: 2 SDKLDLDHLRQWIGKTTEASDVVTKYLVMGLRATLFQEIGEPKAGDAAPWTTHWCLAQPV 61 ++ LDLDHLRQWIG++ +A+D VT LV GLRATLF +IG+P+AGD AP+T HWCL QPV Sbjct: 8 TETLDLDHLRQWIGRSEQATDTVTAQLVKGLRATLFLDIGKPRAGDPAPFTAHWCLGQPV 67 Query: 62 FPMSQLGPDGHPTRGGFLPPVPLPRRMWAGGELEFFDSLRIGDEAKRTSKIADVTVKSGS 121 +PM QLGPDGHPTRGGFLPPVPLPRRMWAGGEL+F D+L++GDE RTS I +VTVK GS Sbjct: 68 YPMDQLGPDGHPTRGGFLPPVPLPRRMWAGGELQFLDALKVGDEVTRTSTIGEVTVKQGS 127 Query: 122 TGTLCFVSVNHEVTTSRGLAVRERQDIVYREM--TSTQGAAPAKAPPPPPVAQHRESHVS 179 TGTLCFV+VNHE+TT RG+A+R+RQDIVYR++ S AAPAK P P AQHRESH++ Sbjct: 128 TGTLCFVTVNHEITTPRGVAIRDRQDIVYRDVPPPSATPAAPAKPAAPAPAAQHRESHLA 187 Query: 180 DPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQASFIVEFAARLRGGKPPKK 239 DPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLI HGP+QA+ VEFAA+L+G PK Sbjct: 188 DPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIVHGPMQAALQVEFAAKLKGCA-PKS 246 Query: 240 LAYRGVQPLFEGSEFSINASDKNGGMELWTANAEGQPTMKGTATW 284 +YRGVQPLF+G++FS+NA++ GG+ELWTANA+G PTMKGTATW Sbjct: 247 FSYRGVQPLFDGADFSVNANETAGGLELWTANADGVPTMKGTATW 291 >ref|YP_001990802.1| hypothetical protein Rpal_1800 [Rhodopseudomonas palustris TIE-1] gb|ACF00327.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 285 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/286 (71%), Positives = 246/286 (86%), Gaps = 3/286 (1%) Query: 1 MSDKLDLDHLRQWIGKTTEASDVVTKYLVMGLRATLFQEIGEPKAGDAAPWTTHWCLAQP 60 M+D LD+DHLRQWIG++ +A+D VT LV GLRATLF +IG+P+AGDAAP+T HWCL QP Sbjct: 1 MTDALDIDHLRQWIGRSEQATDFVTPQLVKGLRATLFLDIGKPQAGDAAPFTVHWCLGQP 60 Query: 61 VFPMSQLGPDGHPTRGGFLPPVPLPRRMWAGGELEFFDSLRIGDEAKRTSKIADVTVKSG 120 V+PM QLGPDGHPTRGGFLPPVPLPRRMWAGGEL+F D+L++GDE RTS I DVT+K G Sbjct: 61 VYPMDQLGPDGHPTRGGFLPPVPLPRRMWAGGELQFVDALKVGDEVTRTSTIGDVTIKQG 120 Query: 121 STGTLCFVSVNHEVTTSRGLAVRERQDIVYREM--TSTQGAAPAKAPPPPPVAQHRESHV 178 STGTLCFV+VNHE+TT RG+A+R+RQDIVYR++ S+ AAPAK PP A+HRESH+ Sbjct: 121 STGTLCFVTVNHEITTPRGVAIRDRQDIVYRDVPPPSSATAAPAKPAAAPPAAKHRESHL 180 Query: 179 SDPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIFHGPLQASFIVEFAARLRGGKPPK 238 +DPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLI HGP+QA+ +VEFAA+L+G PK Sbjct: 181 ADPVLLFRYSALTFNGHRIHYDRDYVTKVEGYPGLIVHGPMQAALLVEFAAKLKGSV-PK 239 Query: 239 KLAYRGVQPLFEGSEFSINASDKNGGMELWTANAEGQPTMKGTATW 284 +YRGVQPLF+G++FS+NA++ G+ELWTAN +G PTMK TA+W Sbjct: 240 TFSYRGVQPLFDGADFSVNANETAAGLELWTANVDGVPTMKATASW 285