BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0017.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01048055.1| recombinase [Nitrobacter sp. Nb-311A] >gi|856... 875 0.0 ref|YP_001601231.1| DNA recombinase [Gluconacetobacter diazotrop... 863 0.0 ref|YP_002275459.1| Resolvase domain [Gluconacetobacter diazotro... 862 0.0 ref|ZP_08318289.1| Putative DNA recombinase [Gluconacetobacter s... 858 0.0 ref|YP_001603155.1| DNA recombinase [Gluconacetobacter diazotrop... 831 0.0 >ref|ZP_01048055.1| recombinase [Nitrobacter sp. Nb-311A] gb|EAQ33953.1| recombinase [Nitrobacter sp. Nb-311A] Length = 553 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/547 (78%), Positives = 486/547 (88%), Gaps = 1/547 (0%) Query: 1 VKVALYARYSSDNQRDASIEDQLRLCRLHAEKQGWTVVDSYTDRAISGASLLRPGIQELI 60 ++VALYARYSSDNQRDASIEDQLRLCR A+++GW VV SYTDRAISGASLLRPG+QELI Sbjct: 1 MRVALYARYSSDNQRDASIEDQLRLCRARADREGWKVVGSYTDRAISGASLLRPGVQELI 60 Query: 61 SDAMRGKFVVVLAEAMDRLSRDQEDIAGLFKRMAFGGVRIVTLSEGDVTHLHVGLKGTMN 120 +D ++ +F ++L E++DRLSRDQEDIAG +KRM F G+ IVTLSEG+V LH+GLKGTM Sbjct: 61 ADGLKRRFDLILTESLDRLSRDQEDIAGFYKRMRFVGISIVTLSEGEVNELHIGLKGTMG 120 Query: 121 ALFLKDLADKTRRGLRGRVADGKSGGGLCFGYDVVKQFAANGEPIRGDRTINEAEAAVVR 180 AL+LKDLADKTRRGLRGRVA+GKSGGGLC+GYDVVKQF ANGE IRGDRTINEAEAA+VR Sbjct: 121 ALYLKDLADKTRRGLRGRVAEGKSGGGLCYGYDVVKQFDANGEAIRGDRTINEAEAAIVR 180 Query: 181 RIFADYIAGKSSRAIAFELNKEGVPGPQDAEWGPSTIHGNPKRGVGILNNELYVGRLVWN 240 RIF DY+AG+SSR IA LNKEGVPGPQ +EWGP+TIHGNPKRGVGILNNELYVG+LVWN Sbjct: 181 RIFVDYLAGQSSRTIAMTLNKEGVPGPQGSEWGPTTIHGNPKRGVGILNNELYVGKLVWN 240 Query: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPEMRIIDQEVWNAVKARQKSLAYE-ASEPGDN 299 RLRYLKDPDTGKRVSRLNPESEWVIQ+VPE+RI+DQEVW+A KARQKSLAYE +EPG+N Sbjct: 241 RLRYLKDPDTGKRVSRLNPESEWVIQDVPELRIVDQEVWDAAKARQKSLAYEPPTEPGEN 300 Query: 300 PLNQRRRPKHLFAGLVKCGCCGGGYTMISKDLLGCATSRNKGTCENRLNIRRDALEASVL 359 LN+RRRPKHLF GLVKCGCCG GYTMISKDLLGC +RNKG CENRLNIRRDALE S+L Sbjct: 301 TLNERRRPKHLFTGLVKCGCCGSGYTMISKDLLGCFGARNKGICENRLNIRRDALEKSIL 360 Query: 360 SGLRTHLMEPELFKEFCDEFTREVNRLRIERSADIISQRKELERVQRDLDRAIQAILDGV 419 +GL THLMEP LFKEFC EFTREVNR RIERS D + R+E ER +R+LD+AIQAILDGV Sbjct: 361 TGLNTHLMEPGLFKEFCQEFTREVNRRRIERSTDFEAWRRESERTERELDKAIQAILDGV 420 Query: 420 PGAQLKEKIGGLEARKAELTELLANAEEPPPLLHPNMAEIYRQRVAALYESLLSADGTAE 479 PGA+LK+KIG LEARKA+LTELLA+A+EPPPLLHPNMAEIYR+++AAL+ L S + + Sbjct: 421 PGARLKDKIGTLEARKAKLTELLASAQEPPPLLHPNMAEIYRKKIAALHRELQSGETEPQ 480 Query: 480 AAELFRTLVDQVTLVPNEAELAILLRGDLAAILRFAANKKNPDILAEAGVLSALLSQESL 539 AAE FR+LV+QV LVP LAI+LRGDLAAILRF A KKNPD+L+EAGVL LLSQ S+ Sbjct: 481 AAETFRSLVNQVDLVPEGGTLAIVLRGDLAAILRFVAGKKNPDVLSEAGVLDDLLSQGSV 540 Query: 540 VAGTGFE 546 VAGTGFE Sbjct: 541 VAGTGFE 547 >ref|YP_001601231.1| DNA recombinase [Gluconacetobacter diazotrophicus PAl 5] emb|CAP54894.1| Putative DNA recombinase [Gluconacetobacter diazotrophicus PAl 5] Length = 555 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/546 (75%), Positives = 472/546 (86%) Query: 1 VKVALYARYSSDNQRDASIEDQLRLCRLHAEKQGWTVVDSYTDRAISGASLLRPGIQELI 60 VKVALYARYSS+NQRDASIEDQLRLCRLHA+KQGWT+VDSYTDRAISGASLLRPGIQELI Sbjct: 4 VKVALYARYSSENQRDASIEDQLRLCRLHAKKQGWTIVDSYTDRAISGASLLRPGIQELI 63 Query: 61 SDAMRGKFVVVLAEAMDRLSRDQEDIAGLFKRMAFGGVRIVTLSEGDVTHLHVGLKGTMN 120 DA RG+F +VLAEAMDRLSRDQEDIAGLFKRM F GVRI+TLSEGDVTHLH+GLKGTMN Sbjct: 64 QDATRGRFTIVLAEAMDRLSRDQEDIAGLFKRMTFSGVRIITLSEGDVTHLHIGLKGTMN 123 Query: 121 ALFLKDLADKTRRGLRGRVADGKSGGGLCFGYDVVKQFAANGEPIRGDRTINEAEAAVVR 180 ALFLKDLA+K RRGLRGRV DGKSGGG +GYDVV+QF A GE IRGDRTINE EA +R Sbjct: 124 ALFLKDLAEKVRRGLRGRVEDGKSGGGNSYGYDVVRQFDAKGERIRGDRTINEEEARTIR 183 Query: 181 RIFADYIAGKSSRAIAFELNKEGVPGPQDAEWGPSTIHGNPKRGVGILNNELYVGRLVWN 240 RIF DY GKSSR IA ELN++GVPGPQ EWGPSTIHGN +RG G+LNNE+YVG+LVWN Sbjct: 184 RIFTDYTRGKSSRTIAMELNRDGVPGPQGREWGPSTIHGNRERGTGVLNNEMYVGKLVWN 243 Query: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPEMRIIDQEVWNAVKARQKSLAYEASEPGDNP 300 RLRYLKDPDTGKRVSRLNPESEWVIQEVPE+RI++Q++W+AVKARQ + E G+ Sbjct: 244 RLRYLKDPDTGKRVSRLNPESEWVIQEVPELRIVEQDLWDAVKARQAETTFSQPERGNEA 303 Query: 301 LNQRRRPKHLFAGLVKCGCCGGGYTMISKDLLGCATSRNKGTCENRLNIRRDALEASVLS 360 L++RRRP+HLFAGL++CGCCGGGY+MISKDLLGC+T+RNKGTC+NRLNIRRDALEASVLS Sbjct: 304 LSERRRPRHLFAGLIRCGCCGGGYSMISKDLLGCSTARNKGTCDNRLNIRRDALEASVLS 363 Query: 361 GLRTHLMEPELFKEFCDEFTREVNRLRIERSADIISQRKELERVQRDLDRAIQAILDGVP 420 GLRTHLMEP+LFKEFC+EFTREVNRLR+E AD+++ R EL R+ R+L + + A+ G P Sbjct: 364 GLRTHLMEPDLFKEFCNEFTREVNRLRMEHGADLVAMRAELPRIDRELAKLLTALKAGGP 423 Query: 421 GAQLKEKIGGLEARKAELTELLANAEEPPPLLHPNMAEIYRQRVAALYESLLSADGTAEA 480 + + + LEARKAE+TE LAN EEPPPLLHPNMAEIY+QR+A+LYESL + D EA Sbjct: 424 IQAIVDDMKRLEARKAEVTERLANTEEPPPLLHPNMAEIYQQRIASLYESLQAEDTKTEA 483 Query: 481 AELFRTLVDQVTLVPNEAELAILLRGDLAAILRFAANKKNPDILAEAGVLSALLSQESLV 540 AE RTLV Q+TL P + ELAI+LRGDLAAIL+FAA+KKN ++GVL A +SQ SLV Sbjct: 484 AERLRTLVSQITLQPADGELAIVLRGDLAAILQFAAHKKNATAHPDSGVLDAFVSQVSLV 543 Query: 541 AGTGFE 546 AGTGFE Sbjct: 544 AGTGFE 549 >ref|YP_002275459.1| Resolvase domain [Gluconacetobacter diazotrophicus PAl 5] gb|ACI50844.1| Resolvase domain [Gluconacetobacter diazotrophicus PAl 5] Length = 578 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/542 (75%), Positives = 468/542 (86%) Query: 1 VKVALYARYSSDNQRDASIEDQLRLCRLHAEKQGWTVVDSYTDRAISGASLLRPGIQELI 60 +KVALYARYSS+NQRDASIEDQLRLCRLHAEKQGWT+VDSYTDRAISGASLLRPGIQELI Sbjct: 1 MKVALYARYSSENQRDASIEDQLRLCRLHAEKQGWTIVDSYTDRAISGASLLRPGIQELI 60 Query: 61 SDAMRGKFVVVLAEAMDRLSRDQEDIAGLFKRMAFGGVRIVTLSEGDVTHLHVGLKGTMN 120 DA RG+F +VLAEAMDRLSRDQEDIAGLFKRM F GVRI+TLSEGDVTHLH+GLKGTMN Sbjct: 61 QDATRGRFTIVLAEAMDRLSRDQEDIAGLFKRMTFAGVRIITLSEGDVTHLHIGLKGTMN 120 Query: 121 ALFLKDLADKTRRGLRGRVADGKSGGGLCFGYDVVKQFAANGEPIRGDRTINEAEAAVVR 180 ALFLKDLA+K RRGLRGRV DGKSGGG +GYDVV+QF A GE IRGDRTINE EA VR Sbjct: 121 ALFLKDLAEKVRRGLRGRVEDGKSGGGNSYGYDVVRQFDAQGERIRGDRTINEEEARTVR 180 Query: 181 RIFADYIAGKSSRAIAFELNKEGVPGPQDAEWGPSTIHGNPKRGVGILNNELYVGRLVWN 240 RIF DY GKSSR IA ELN++GVPGPQ EWGPSTIHGN +RG GILNNE+YVGRL+WN Sbjct: 181 RIFTDYTRGKSSRTIAMELNRDGVPGPQGREWGPSTIHGNRERGTGILNNEMYVGRLLWN 240 Query: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPEMRIIDQEVWNAVKARQKSLAYEASEPGDNP 300 RLRYLKDPDTGKRVSRLNPESEWVIQEVPE+RIIDQ++W+AVKARQ + E G+ Sbjct: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPELRIIDQDLWDAVKARQAETTFNQPERGNEA 300 Query: 301 LNQRRRPKHLFAGLVKCGCCGGGYTMISKDLLGCATSRNKGTCENRLNIRRDALEASVLS 360 L++RRRP+HLFAGL++CGCCGGGY+MISKDLLGC+T+RNKGTC+NRLNIRRDALEASVLS Sbjct: 301 LSERRRPRHLFAGLIRCGCCGGGYSMISKDLLGCSTARNKGTCDNRLNIRRDALEASVLS 360 Query: 361 GLRTHLMEPELFKEFCDEFTREVNRLRIERSADIISQRKELERVQRDLDRAIQAILDGVP 420 GLRTHLMEP+LFKEFC+EFTREVNRLR+E AD+++ R EL R+ R+L + + A+ G P Sbjct: 361 GLRTHLMEPDLFKEFCNEFTREVNRLRMEHGADLVAMRAELPRIDRELAKLLTALKAGGP 420 Query: 421 GAQLKEKIGGLEARKAELTELLANAEEPPPLLHPNMAEIYRQRVAALYESLLSADGTAEA 480 + + + LEARKAE+TE LAN EEPPPLLHPNMAEIY+QR+A+LYESL + + EA Sbjct: 421 IQAIVDDMKRLEARKAEVTERLANTEEPPPLLHPNMAEIYQQRIASLYESLQAEETKTEA 480 Query: 481 AELFRTLVDQVTLVPNEAELAILLRGDLAAILRFAANKKNPDILAEAGVLSALLSQESLV 540 AE RTLV Q+TL P E ELAI+LRGDLAAIL+FAA+KKN ++GVL A +SQ SLV Sbjct: 481 AERLRTLVSQITLQPTEGELAIILRGDLAAILQFAAHKKNTTAHPDSGVLDAFVSQVSLV 540 Query: 541 AG 542 AG Sbjct: 541 AG 542 >ref|ZP_08318289.1| Putative DNA recombinase [Gluconacetobacter sp. SXCC-1] gb|EGG75074.1| Putative DNA recombinase [Gluconacetobacter sp. SXCC-1] Length = 552 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/546 (74%), Positives = 469/546 (85%) Query: 1 VKVALYARYSSDNQRDASIEDQLRLCRLHAEKQGWTVVDSYTDRAISGASLLRPGIQELI 60 +KVALYARYSS+NQRDASIEDQLRLCRLHAEKQGWT+VDSYTDRAISGASLLRPGIQELI Sbjct: 1 MKVALYARYSSENQRDASIEDQLRLCRLHAEKQGWTIVDSYTDRAISGASLLRPGIQELI 60 Query: 61 SDAMRGKFVVVLAEAMDRLSRDQEDIAGLFKRMAFGGVRIVTLSEGDVTHLHVGLKGTMN 120 DA RG+F +VLAEAMDRLSRDQEDIAGLFKRM F GVRI+TLSEGDVTHLH+GLKGTMN Sbjct: 61 QDATRGRFTIVLAEAMDRLSRDQEDIAGLFKRMTFSGVRIITLSEGDVTHLHIGLKGTMN 120 Query: 121 ALFLKDLADKTRRGLRGRVADGKSGGGLCFGYDVVKQFAANGEPIRGDRTINEAEAAVVR 180 ALFLKDLA+K RRGLRGRV DGKSGGG +GYDVV+QF A GE IRGDRTINE EA VR Sbjct: 121 ALFLKDLAEKVRRGLRGRVEDGKSGGGNSYGYDVVRQFDAKGERIRGDRTINEDEARTVR 180 Query: 181 RIFADYIAGKSSRAIAFELNKEGVPGPQDAEWGPSTIHGNPKRGVGILNNELYVGRLVWN 240 RIF DY GKSSR IA ELN++GVPGPQ EWGPSTIHGN +RG G+LNNE+YVGRLVWN Sbjct: 181 RIFTDYTRGKSSRTIAMELNRDGVPGPQGREWGPSTIHGNRERGTGVLNNEMYVGRLVWN 240 Query: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPEMRIIDQEVWNAVKARQKSLAYEASEPGDNP 300 RLRYLKDPD GKRVSRLNPESEWVIQEVPE+RI++Q++W+AVKARQ + E G+ Sbjct: 241 RLRYLKDPDNGKRVSRLNPESEWVIQEVPELRIVEQDLWDAVKARQAETTFSQPERGNEA 300 Query: 301 LNQRRRPKHLFAGLVKCGCCGGGYTMISKDLLGCATSRNKGTCENRLNIRRDALEASVLS 360 L++RRRP+HLFAGL++CGCCGGGY+MISKDLLGC+T+RNKGTC+NRLNIRRDALEASVLS Sbjct: 301 LSERRRPRHLFAGLIRCGCCGGGYSMISKDLLGCSTARNKGTCDNRLNIRRDALEASVLS 360 Query: 361 GLRTHLMEPELFKEFCDEFTREVNRLRIERSADIISQRKELERVQRDLDRAIQAILDGVP 420 GLRTHLMEP+LFKEFC+EFTREVNRLR+E AD+++ R EL R+ R+L + + A+ G P Sbjct: 361 GLRTHLMEPDLFKEFCNEFTREVNRLRMEHGADLVAMRAELPRIDRELAKLLTALKAGGP 420 Query: 421 GAQLKEKIGGLEARKAELTELLANAEEPPPLLHPNMAEIYRQRVAALYESLLSADGTAEA 480 + + + LEARKAE+TE L N EEP PLLHPNMAEIY+QR+A+LYESL + D EA Sbjct: 421 IQAIVDDMKRLEARKAEVTERLGNTEEPRPLLHPNMAEIYQQRIASLYESLQAEDTKTEA 480 Query: 481 AELFRTLVDQVTLVPNEAELAILLRGDLAAILRFAANKKNPDILAEAGVLSALLSQESLV 540 AE RTLV Q+TL P + ELAI+LRGDLAAIL+FAA+KKN + ++GVL A +SQ SLV Sbjct: 481 AERLRTLVSQITLQPTDGELAIILRGDLAAILQFAAHKKNATVHPDSGVLDAFVSQVSLV 540 Query: 541 AGTGFE 546 AG GFE Sbjct: 541 AGAGFE 546 >ref|YP_001603155.1| DNA recombinase [Gluconacetobacter diazotrophicus PAl 5] emb|CAP56865.1| putative DNA recombinase [Gluconacetobacter diazotrophicus PAl 5] Length = 553 Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/547 (72%), Positives = 457/547 (83%), Gaps = 1/547 (0%) Query: 1 VKVALYARYSSDNQRDASIEDQLRLCRLHAEKQGWTVVDSYTDRAISGASLLRPGIQELI 60 ++VALYARYSSD+QRDASIEDQLRLCR HAEKQGWT+VDSYTDRA+SGASLLRPGIQEL+ Sbjct: 1 MRVALYARYSSDHQRDASIEDQLRLCRAHAEKQGWTIVDSYTDRAVSGASLLRPGIQELM 60 Query: 61 SDAMRGKFVVVLAEAMDRLSRDQEDIAGLFKRMAFGGVRIVTLSEGDVTHLHVGLKGTMN 120 DA RGKF ++LAEAMDRLSRDQEDIAGLFKRM F VRI+TLSEGDVTHLH+GLKGTMN Sbjct: 61 QDAQRGKFSIILAEAMDRLSRDQEDIAGLFKRMKFADVRIITLSEGDVTHLHIGLKGTMN 120 Query: 121 ALFLKDLADKTRRGLRGRVADGKSGGGLCFGYDVVKQFAANGEPIRGDRTINEAEAAVVR 180 ALFLKDLADKT RGLRGR+ GKSGGGLC+GYDVV+Q A GEP+RGDRTIN EAAVVR Sbjct: 121 ALFLKDLADKTHRGLRGRIEAGKSGGGLCYGYDVVRQVDARGEPLRGDRTINATEAAVVR 180 Query: 181 RIFADYIAGKSSRAIAFELNKEGVPGPQDAEWGPSTIHGNPKRGVGILNNELYVGRLVWN 240 RIFADY AG SSR IA LN +G+PGP +WGPSTIHGN +RG GILNN+LY+GRLVWN Sbjct: 181 RIFADYNAGHSSRTIAMRLNADGIPGPLGNDWGPSTIHGNAQRGTGILNNDLYIGRLVWN 240 Query: 241 RLRYLKDPDTGKRVSRLNPESEWVIQEVPEMRIIDQEVWNAVKARQKSLAYEASEPGDNP 300 RLRYLKDPDTGKRVSR+NP EWV+Q+VPE+RIIDQE+W+AVK RQ+SLA+ DNP Sbjct: 241 RLRYLKDPDTGKRVSRVNPTDEWVMQDVPELRIIDQELWDAVKTRQRSLAFSTGSKSDNP 300 Query: 301 LNQRRRPKHLFAGLVKCGCCGGGYTMISKDLLGCATSRNKGTCENRLNIRRDALEASVLS 360 + +R RP +L +GLV+CGCCGGGY+ IS DLLGC+ +R KGTC+NRLNIRRDALEASVLS Sbjct: 301 MRERSRPVYLLSGLVRCGCCGGGYSKISADLLGCSNARYKGTCDNRLNIRRDALEASVLS 360 Query: 361 GLRTHLMEPELFKEFCDEFTREVNRLRIERSADIISQRKELERVQRDLDRAIQAILDGVP 420 GLRTHLMEPELFKEFC EFTREVNRLR+ERSAD++++++ELER+ RDLDRAI AI GVP Sbjct: 361 GLRTHLMEPELFKEFCQEFTREVNRLRMERSADLVARQQELERINRDLDRAIDAIFGGVP 420 Query: 421 GAQLKEKIGGLEARKAELTELLANAEEPPPLLHPNMAEIYRQRVAALYESLLSADGTAEA 480 +LK+++ LEAR+ ELT LL +A+EPPPLLHPNMAE YR R+A L E+L EA Sbjct: 421 PGKLKDRMTRLEARREELTALLVDAKEPPPLLHPNMAETYRDRLARLSETLSGTGVRNEA 480 Query: 481 AELFRTLVDQVTLVPNEAE-LAILLRGDLAAILRFAANKKNPDILAEAGVLSALLSQESL 539 AE R L+ V L P + L I L+GDLAAIL FAA+KKN E GVL + LSQ SL Sbjct: 481 AERIRALISAVVLTPEGRDGLTITLKGDLAAILAFAADKKNATAHPERGVLQSFLSQASL 540 Query: 540 VAGTGFE 546 VAG GFE Sbjct: 541 VAGAGFE 547