BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0007.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578015.1| hypothetical protein Nham_2778 [Nitrobacter ham... 290 1e-76 ref|ZP_08630152.1| O-antigen export system permease protein RfbD... 263 1e-68 ref|NP_770292.1| O-antigen export system permease protein [Brady... 254 9e-66 ref|YP_003444904.1| ABC-2 type transporter [Allochromatium vinos... 203 1e-50 ref|ZP_08769819.1| ABC-2 type transporter [Thiocapsa marina 5811... 196 3e-48 >ref|YP_578015.1| hypothetical protein Nham_2778 [Nitrobacter hamburgensis X14] gb|ABE63555.1| ABC-2 protein [Nitrobacter hamburgensis X14] Length = 285 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/216 (62%), Positives = 176/216 (81%) Query: 1 MAIMIVSLGLLYAQIFQSRIDDFLPYLCVGFLVWGYFSSFLTEAGLLFVGSETYIKQIKL 60 MAIM+V+LG+LYA++F++ +D+ LP+LCVGFLVW +SFL EAG LF GSE+YIKQI+L Sbjct: 70 MAIMVVALGILYAKLFKTPVDNLLPFLCVGFLVWTLIASFLVEAGTLFTGSESYIKQIRL 129 Query: 61 PYALYVCRGTWSKVIIFAHNFVIYLGVMAYFHNSPGANALLAVPGFVLLTINGALVTLFI 120 PY++YV R WSK+IIFAHN VIYLGV+ YF PGA +LLA+PG +L+ +NGA+++LFI Sbjct: 130 PYSVYVYRSCWSKLIIFAHNAVIYLGVILYFKIWPGAVSLLAIPGLILVLLNGAIISLFI 189 Query: 121 GMASARFRDIPQVIGSLVQILFFITPIMWKSDQLKDRTLIVDWNPFYHLIQIVRDPLLGD 180 GM SARFRDIPQ+I S VQI+FF+TPI W L+ RT ++D+NPFYHL++IVR PLLG Sbjct: 190 GMVSARFRDIPQLIASFVQIVFFVTPIFWMPSLLQGRTFVLDFNPFYHLVEIVRAPLLGL 249 Query: 181 IPTAATYVVVITMTLINLVVVGLFFGRFRERISYWV 216 +P++ +Y+ ++ +TLIN V G FF RFR RISYWV Sbjct: 250 VPSSKSYLAILLITLINTAVTGAFFARFRSRISYWV 285 >ref|ZP_08630152.1| O-antigen export system permease protein RfbD [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07025.1| O-antigen export system permease protein RfbD [Bradyrhizobiaceae bacterium SG-6C] Length = 273 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 121/216 (56%), Positives = 169/216 (78%) Query: 1 MAIMIVSLGLLYAQIFQSRIDDFLPYLCVGFLVWGYFSSFLTEAGLLFVGSETYIKQIKL 60 MAIM+V+LG++Y+ +F++ + F+P+LC G L+WGY S+ +TEAG LF G+E+YIKQI+L Sbjct: 58 MAIMVVALGIVYSTLFKAELRHFMPFLCAGLLIWGYISTMITEAGTLFTGAESYIKQIRL 117 Query: 61 PYALYVCRGTWSKVIIFAHNFVIYLGVMAYFHNSPGANALLAVPGFVLLTINGALVTLFI 120 PY+LYV R WSKVII AHNFV+Y+ V+ YFH PG+ AL A+PGF+L+T+NGAL + + Sbjct: 118 PYSLYVFRFVWSKVIILAHNFVVYIAVLLYFHAWPGSVALYAIPGFLLVTLNGALAGMSL 177 Query: 121 GMASARFRDIPQVIGSLVQILFFITPIMWKSDQLKDRTLIVDWNPFYHLIQIVRDPLLGD 180 GM SARFRDIPQ++ SLVQI+FFITPIMWK + L ++ +NPF++L++++R PLLG Sbjct: 178 GMISARFRDIPQIMTSLVQIIFFITPIMWKPELLGAHQELMTFNPFFYLVEVMRGPLLGQ 237 Query: 181 IPTAATYVVVITMTLINLVVVGLFFGRFRERISYWV 216 IP TY+ ++ +T++N+ FF RFR RISYWV Sbjct: 238 IPAVQTYLAMLLITVLNMAFAAFFFVRFRSRISYWV 273 >ref|NP_770292.1| O-antigen export system permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48917.1| rfbD [Bradyrhizobium japonicum USDA 110] Length = 282 Score = 254 bits (648), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 165/216 (76%) Query: 1 MAIMIVSLGLLYAQIFQSRIDDFLPYLCVGFLVWGYFSSFLTEAGLLFVGSETYIKQIKL 60 M I+I SLGLLYA++FQ +++FLPY +G L+WG+ SS+LTE+G LF G+E YIKQI L Sbjct: 67 MGILIGSLGLLYARLFQQPVEEFLPYCGIGLLIWGFMSSYLTESGTLFSGAEAYIKQISL 126 Query: 61 PYALYVCRGTWSKVIIFAHNFVIYLGVMAYFHNSPGANALLAVPGFVLLTINGALVTLFI 120 P++LYV R +W+K+I+ AHNF+IY G++ YF PGA ALLA+P ++ NG ++L I Sbjct: 127 PFSLYVYRASWAKLIMLAHNFIIYFGIILYFRIWPGAAALLAIPALCIVAFNGMAISLTI 186 Query: 121 GMASARFRDIPQVIGSLVQILFFITPIMWKSDQLKDRTLIVDWNPFYHLIQIVRDPLLGD 180 GM SARFRDIPQVI S+VQILFF+TP+MWK D +K + + NP YHL+QIVR PLLG+ Sbjct: 187 GMISARFRDIPQVINSVVQILFFVTPLMWKPDAVKIPAYVTELNPVYHLLQIVRAPLLGE 246 Query: 181 IPTAATYVVVITMTLINLVVVGLFFGRFRERISYWV 216 +PTA+ Y V +TLIN+ + GL F R+R RI+YWV Sbjct: 247 VPTASNYAAVGLVTLINVALSGLLFSRYRARIAYWV 282 >ref|YP_003444904.1| ABC-2 type transporter [Allochromatium vinosum DSM 180] gb|ADC63872.1| ABC-2 type transporter [Allochromatium vinosum DSM 180] Length = 283 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/216 (44%), Positives = 143/216 (66%) Query: 1 MAIMIVSLGLLYAQIFQSRIDDFLPYLCVGFLVWGYFSSFLTEAGLLFVGSETYIKQIKL 60 MAIM+++LGLLY QIF + D+LP+L GF++WG +S + + F+ +E I+Q+ Sbjct: 68 MAIMVLALGLLYGQIFGQDLHDYLPFLAAGFVIWGLIASLVNDGCQSFILAEGMIRQLNA 127 Query: 61 PYALYVCRGTWSKVIIFAHNFVIYLGVMAYFHNSPGANALLAVPGFVLLTINGALVTLFI 120 P ++Y RG WS +I FAHN ++LGV +F N L ++L +NG + LF+ Sbjct: 128 PLSIYAYRGLWSTLIAFAHNIWVFLGVALWFGVDLNWNLLWVPVALLMLFLNGLWMALFL 187 Query: 121 GMASARFRDIPQVIGSLVQILFFITPIMWKSDQLKDRTLIVDWNPFYHLIQIVRDPLLGD 180 G+ SARFRD+P +IGS+VQ+LFFITP++WK D L R L +D NPFYHL++I+R PLLG Sbjct: 188 GLLSARFRDVPLIIGSVVQVLFFITPVIWKPDMLPGRALWLDLNPFYHLVEIMRAPLLGQ 247 Query: 181 IPTAATYVVVITMTLINLVVVGLFFGRFRERISYWV 216 P+ ++ VI +T+I V F+ +R R++YWV Sbjct: 248 PPSLGNWLTVIAITIIGWAVALFFYSAYRWRVAYWV 283 >ref|ZP_08769819.1| ABC-2 type transporter [Thiocapsa marina 5811] gb|EGV19413.1| ABC-2 type transporter [Thiocapsa marina 5811] Length = 283 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 141/216 (65%) Query: 1 MAIMIVSLGLLYAQIFQSRIDDFLPYLCVGFLVWGYFSSFLTEAGLLFVGSETYIKQIKL 60 M +M+ +LGLLY QIF + D+LP+L GF++WG S+ + F+ +E I+Q+ Sbjct: 68 MGVMVFALGLLYGQIFGQELHDYLPFLAAGFVIWGLVSAMILGGCTTFISAEGMIRQLNA 127 Query: 61 PYALYVCRGTWSKVIIFAHNFVIYLGVMAYFHNSPGANALLAVPGFVLLTINGALVTLFI 120 P ++Y R W+ VI FAHN I++ V ++ NAL +P +L ING + LF Sbjct: 128 PVSIYAYREVWTAVIAFAHNIWIFVAVAWWYDVDLSWNALWILPAVAILLINGFWMALFF 187 Query: 121 GMASARFRDIPQVIGSLVQILFFITPIMWKSDQLKDRTLIVDWNPFYHLIQIVRDPLLGD 180 G+ SARFRD+P +IGS+VQ+LFF+TP++W+ + L DR L+++ NPFYH+++I+R P+LG Sbjct: 188 GLLSARFRDVPLIIGSIVQVLFFLTPVIWRPEMLPDRALLLELNPFYHMVEILRAPMLGH 247 Query: 181 IPTAATYVVVITMTLINLVVVGLFFGRFRERISYWV 216 P+ + ++ V+ + ++ V F+ +R RI+YWV Sbjct: 248 TPSLSNWLAVLLIAVVGWGVTLFFYSAYRWRIAYWV 283