BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0006.p         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004153105.1| NAD-dependent epimerase/dehydratase [Variovo...    55   3e-06
ref|YP_578018.1| NAD-dependent epimerase/dehydratase [Nitrobacte...    43   0.013
ref|ZP_05966074.1| UDP-glucose 4-epimerase [Bifidobacterium gall...    43   0.014
emb|CBH38553.1| putative NAD dependent epimerase/dehydratase [un...    40   0.13 
ref|YP_003706503.1| NAD-dependent epimerase/dehydratase [Trueper...    40   0.15 

>ref|YP_004153105.1| NAD-dependent epimerase/dehydratase [Variovorax paradoxus EPS]
 gb|ADU34994.1| NAD-dependent epimerase/dehydratase [Variovorax paradoxus EPS]
          Length = 308

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%)

Query: 3   QIINVCTGVGTTVQHLVDRLMEIVDAPITHEVEGERRGTSDLDIIIGDANRLSQLGIAVP 62
           +++N+CTG G  +  L  RL+ +   P+  + +  RRG SD+   +GD +RL  LG+   
Sbjct: 227 EVVNICTGNGQRLLDLTQRLIAVSGVPVELQHDESRRGNSDVRAFVGDPSRLKALGLRTE 286

Query: 63  LPDVDAILRQMLAAAQ 78
             D+DA+L  +L +A+
Sbjct: 287 PSDMDAVLEAILHSAR 302


>ref|YP_578018.1| NAD-dependent epimerase/dehydratase [Nitrobacter hamburgensis X14]
 gb|ABE63558.1| NAD-dependent epimerase/dehydratase [Nitrobacter hamburgensis X14]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 2   GQIINVCTGVGTTVQHLVDRLMEIVDAPITHEVEGERRGTSDLDIIIGDANRLSQLGIAV 61
           G I+NV +G+   +  L+ +L+     PIT E + ERR  SDL  IIGDA R  +L    
Sbjct: 232 GLILNVASGIPRRIGDLLLKLLTQSTVPITIEHDPERRRPSDLPRIIGDATRARELLGWR 291

Query: 62  PLPDVDAILRQML 74
           P   +D  LR +L
Sbjct: 292 PEYTLDDTLRAVL 304


>ref|ZP_05966074.1| UDP-glucose 4-epimerase [Bifidobacterium gallicum DSM 20093]
 gb|EFA22688.1| UDP-glucose 4-epimerase [Bifidobacterium gallicum DSM 20093]
          Length = 336

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 4   IINVCTGVGTTVQHLVDRLMEIVDAPITHEVEGERRGTSDLDIIIGDANRLSQLGIAVPL 63
           + NV TG GT+V+ +VD + ++   P T  V   R G  D   +IGDA R++ +      
Sbjct: 248 VFNVGTGKGTSVRQIVDEVKKVTGLPFTETVMARRAG--DPPQLIGDATRINTVMGWHAQ 305

Query: 64  PDVDAILRQMLAAAQA 79
            DVD I++    A QA
Sbjct: 306 YDVDDIVKSAWEAWQA 321


>emb|CBH38553.1| putative NAD dependent epimerase/dehydratase [uncultured archaeon]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 2   GQIINVCTGVGTTVQHLVDRLMEIVDAPITHEVEGERRGTSDLDIIIGDANRLSQLGIAV 61
           G++ N+C+GV   +Q + D L  +VD  I  + + ER   SD++I++ D ++  +    V
Sbjct: 241 GEVYNICSGVAREIQSVFDILQGMVDVQIEVKQDPERMRPSDVEILMCDCSKFRERTGWV 300

Query: 62  P 62
           P
Sbjct: 301 P 301


>ref|YP_003706503.1| NAD-dependent epimerase/dehydratase [Truepera radiovictrix DSM
           17093]
 gb|ADI15960.1| NAD-dependent epimerase/dehydratase [Truepera radiovictrix DSM
           17093]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 2   GQIINVCTGVGTTVQHLVDRLMEIVDAPITHEVEGERRGTSDLDIIIGDANRLSQ-LGIA 60
           G + N+ +G G +V+ L + ++E  +  +  E E  R   SD+  ++GDA R  + +G A
Sbjct: 223 GGVYNLASGRGVSVRELAELVLERAEVTVRLETEAARVRASDIPELVGDATRAREAVGWA 282

Query: 61  VPLPDVDAILRQMLA 75
             +P ++A L  MLA
Sbjct: 283 PSIP-LEATLEAMLA 296