BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0005.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153104.1| nucleotidyl transferase [Variovorax paradoxu... 293 2e-77 ref|YP_002499500.1| Nucleotidyl transferase [Methylobacterium no... 249 2e-64 ref|YP_460445.1| mannose-1-phosphate guanyltransferase [Syntroph... 221 7e-56 ref|YP_566238.1| nucleotidyl transferase [Methanococcoides burto... 211 9e-53 ref|ZP_08829942.1| putative sugar dehydratase/epimerase [endosym... 208 5e-52 >ref|YP_004153104.1| nucleotidyl transferase [Variovorax paradoxus EPS] gb|ADU34993.1| Nucleotidyl transferase [Variovorax paradoxus EPS] Length = 238 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/235 (63%), Positives = 185/235 (78%), Gaps = 3/235 (1%) Query: 3 KALIMAGGKGTRLKPFTASFPKPLVPLGDLPVLELLLRQLKAAGVQEVVLSVNHLHHLIR 62 KA++MAGGKGTRL+PFTASFPKPL+PLGD+PVLELLLRQL+ AGV EV+L+VNHLHHLIR Sbjct: 2 KAVVMAGGKGTRLQPFTASFPKPLMPLGDMPVLELLLRQLRRAGVDEVILAVNHLHHLIR 61 Query: 63 AFCEDGSKFGLKIDYVLEDEPLGTAGSLAYALDKLSDDFIVANGDLLTNFNIAKMVQEHR 122 AFC DGS+FGLKIDY LED PLGTAG L +DK+ ++FIV NGDLLT F+I ++++ H Sbjct: 62 AFCGDGSRFGLKIDYSLEDSPLGTAGPLGALIDKVGENFIVTNGDLLTTFDIGQLIRTHA 121 Query: 123 TQPTAASIAVFKRSTKIEFGLVEVDGNMRLTGYREKPTYSHLVSMGLYVLNRGSVAPHLV 182 + + A+I V++R KI+FGL++VD M L GY EKP HLVSMGLY+LNR +V PH+ Sbjct: 122 ERQSDATICVYEREVKIDFGLIQVDAEMNLQGYLEKPMSKHLVSMGLYMLNRDAVKPHVS 181 Query: 183 PGKYLDMPHLMQILIEAGKSVLCRSQ-DCLWLDIGRPX--ATAQQLFEEKRELFL 234 G +LDMP L+ L AGK V C Q + WLDIGRP +TAQ++F+E RELFL Sbjct: 182 EGVHLDMPDLLLKLSAAGKKVRCHQQPESFWLDIGRPEDYSTAQKMFDESRELFL 236 >ref|YP_002499500.1| Nucleotidyl transferase [Methylobacterium nodulans ORS 2060] gb|ACL59197.1| Nucleotidyl transferase [Methylobacterium nodulans ORS 2060] Length = 238 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 3 KALIMAGGKGTRLKPFTASFPKPLVPLGDLPVLELLLRQLKAAGVQEVVLSVNHLHHLIR 62 KA+++AGGKGTRL P++A PKPL+P+G++P+LELLLRQ+K G+ EV+L+VNHLHHLIR Sbjct: 2 KAIVLAGGKGTRLMPYSALIPKPLMPIGEMPILELLLRQMKHHGISEVILAVNHLHHLIR 61 Query: 63 AFCEDGSKFGLKIDYVLEDEPLGTAGSLAYALDKLSDDFIVANGDLLTNFNIAKMVQEHR 122 +F DGS GLKI Y +ED+ LGT+G + LD LSDDF+V+NGDLLTN + M+++H Sbjct: 62 SFFGDGSSLGLKITYSVEDKALGTSGPITANLDALSDDFLVSNGDLLTNLDFGAMMRQHI 121 Query: 123 TQPTAASIAVFKRSTKIEFGLVEVDGNMRLTGYREKPTYSHLVSMGLYVLNRGSVAPHLV 182 + AA+IA R+ + ++G + VD + + YREKP +S SMGLYVL++ +V PHL Sbjct: 122 ARQVAATIATQSRAMQADYGALTVDKDNLIREYREKPIFSFEASMGLYVLSKKAVRPHLP 181 Query: 183 PGKYLDMPHLMQILIEAGKSVLCRSQDCLWLDIGRPX--ATAQQLFEEKRELFL 234 + DMP L++ LIEA + VL ++ C W+DIG+P AQ+ F + LFL Sbjct: 182 VNTFFDMPDLIKSLIEADQPVLSYNETCNWIDIGKPNDYGRAQERFAAEPNLFL 235 >ref|YP_460445.1| mannose-1-phosphate guanyltransferase [Syntrophus aciditrophicus SB] gb|ABC76277.1| mannose-1-phosphate guanyltransferase [Syntrophus aciditrophicus SB] Length = 240 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 158/236 (66%), Gaps = 8/236 (3%) Query: 3 KALIMAGGKGTRLKPFTASFPKPLVPLGDLPVLELLLRQLKAAGVQEVVLSVNHLHHLIR 62 KA+++AGGKG RL P+T PKPL+P+GD+P+LE+LLRQ+K AG+ V+L+V HL L+R Sbjct: 2 KAVVLAGGKGARLAPYTKILPKPLMPIGDMPILEVLLRQMKVAGIDHVILTVGHLSELLR 61 Query: 63 AFCEDGSKFGLKIDYVLEDEPLGTAGSLAYALDKLSDDFIVANGDLLTNFNIAKMVQEHR 122 AF +DGS+FG+ I Y E PLGTAG ++ +D L + F+V NGD+LT ++ +++ HR Sbjct: 62 AFFQDGSQFGVDISYSYEKCPLGTAGPIS-LIDGLDETFLVTNGDVLTTLSLRELIGFHR 120 Query: 123 TQPTAASIAVFKRSTKIEFGLVEVDGNMRLTGYREKPTYSHLVSMGLYVLNRG--SVAPH 180 Q AA+IAV +R TKI+ G+++ +GN + GY EKP Y + VSMG+YV S PH Sbjct: 121 EQKAAATIAVHQRQTKIDLGVIQWNGNYEVKGYIEKPVYDYTVSMGVYVFEPKVLSYIPH 180 Query: 181 LVPGKYLDMPHLMQILIEAGKSVLCRSQDCLWLDIGRP--XATAQQLFEEKRELFL 234 G+YLD P L++ LI AG+ V+ W D+GRP A + FE RE FL Sbjct: 181 ---GEYLDFPDLVKKLIAAGEKVVGYRFHGYWEDLGRPDDYERASRDFESMREQFL 233 >ref|YP_566238.1| nucleotidyl transferase [Methanococcoides burtonii DSM 6242] gb|ABE52488.1| Mannose-1-phosphate guanyltransferase [Methanococcoides burtonii DSM 6242] Length = 238 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 157/234 (67%), Gaps = 4/234 (1%) Query: 3 KALIMAGGKGTRLKPFTASFPKPLVPLGDLPVLELLLRQLKAAGVQEVVLSVNHLHHLIR 62 +A+I+AGGKGTRL P+T PKPL+P+GD+P+LE+++RQLK G ++VL+V HL LI Sbjct: 7 QAVILAGGKGTRLAPYTTVLPKPLMPIGDMPILEIVIRQLKKNGFTDIVLAVGHLAGLIE 66 Query: 63 AFCEDGSKFGLKIDYVLEDEPLGTAGSLAYALDKLSDDFIVANGDLLTNFNIAKMVQEHR 122 A+ DGSK+G+ I Y +EDEPLGTAG L+ +D L ++F+V NGDLLTN N + +++ H Sbjct: 67 AYFGDGSKWGVNITYSIEDEPLGTAGPLS-LIDDLDENFLVMNGDLLTNVNYSDLMRFHL 125 Query: 123 TQPTAASIAVFKRSTKIEFGLVEVDGNMRLTGYREKPTYSHLVSMGLYVLNRGSVAPHLV 182 ++++V+ + I G++E+D N ++T Y EKPT + VSMG+YV NR + H+ Sbjct: 126 ENDALSTVSVYTKDVPISLGVLELDDNGKITDYIEKPTLKYKVSMGIYVFNR-KILEHIK 184 Query: 183 PGKYLDMPHLMQILIEAGKSVLCRSQDCLWLDIGRPXATAQQL--FEEKRELFL 234 G+YLD P L++ LI ++V + W+DIGR ++ L FE ++ L Sbjct: 185 KGEYLDFPDLIKNLISLNENVSGYMFEGYWMDIGRYEDYSKVLEEFESMKDELL 238 >ref|ZP_08829942.1| putative sugar dehydratase/epimerase [endosymbiont of Riftia pachyptila (vent Ph05)] gb|EGV51134.1| putative sugar dehydratase/epimerase [endosymbiont of Riftia pachyptila (vent Ph05)] Length = 246 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 153/235 (65%), Gaps = 4/235 (1%) Query: 2 TKALIMAGGKGTRLKPFTASFPKPLVPLGDLPVLELLLRQLKAAGVQEVVLSVNHLHHLI 61 +A+I+AGGKG RL+P T PKPLVPLG+ P+LE+L+R+L + G++++ + +L +I Sbjct: 10 VRAVILAGGKGMRLRPLTTVLPKPLVPLGNKPILEVLMRRLGSFGLKDISICTGYLAEII 69 Query: 62 RAFCEDGSKFGLKIDYVLEDEPLGTAGSLAYALDKLSDDFIVANGDLLTNFNIAKMVQEH 121 A C DGSK+ +I Y E++PLGTA LA D L + IV NGDLLT + KM++ H Sbjct: 70 MAVCGDGSKYDARISYSGEEKPLGTAAPLARIPD-LPETVIVMNGDLLTTLDFGKMIEFH 128 Query: 122 RTQPTAASIAVFKRSTKIEFGLVEVDGNMRLTGYREKPTYSHLVSMGLYVLNRGSVAPHL 181 + Q +I V+KR KI+FG+V+ D + TG+ EKPTY + VSMG+ V+NR +A + Sbjct: 129 KAQQADFTIGVYKRDVKIDFGVVQSDDDGLFTGFIEKPTYHYEVSMGVNVINREVIA-GI 187 Query: 182 VPGKYLDMPHLMQILIEAGKSVLCRSQDCLWLDIGR--PXATAQQLFEEKRELFL 234 P +YLDMP L+Q + + G V +DC WLDIGR ATAQ+ F + FL Sbjct: 188 DPDEYLDMPDLIQRVHDQGGKVALYREDCYWLDIGRMDDYATAQEEFAGMEDQFL 242