BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0001.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium ja... 286 2e-75 ref|YP_577509.1| hypothetical protein Nham_2257 [Nitrobacter ham... 284 5e-75 ref|YP_781945.1| hypothetical protein RPE_3028 [Rhodopseudomonas... 282 2e-74 ref|NP_768975.1| hypothetical protein bll2335 [Bradyrhizobium ja... 282 2e-74 ref|ZP_01046047.1| hypothetical protein NB311A_00725 [Nitrobacte... 281 3e-74 >ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium japonicum USDA 110] dbj|BAC50332.1| blr5067 [Bradyrhizobium japonicum USDA 110] Length = 214 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 136/179 (75%), Positives = 153/179 (85%) Query: 2 SPCGKIALFIDGPNLQATAKALGFDIDYNRLPELFQSRGALLRAFYYTPIVEDQEYSAVR 61 SP KIALFIDG NL ATAK LGFDIDY RL + FQSRG LLRAFYYT I+EDQEYS++R Sbjct: 4 SPTNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSIR 63 Query: 62 PLLDWLDYNGYAVVTKLTKDFAEACGRRKAKGSMDIKLAVDVMELAEHVDQIILFSGDGN 121 PL+DWLDYNGY VVTK TK+F +A GRRK KG+MDI+LAVD MELAEH+DQ++LFSGDG+ Sbjct: 64 PLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGD 123 Query: 122 FRCLVEAVQRRGVRVTVVSSFAIQPAMIADELRRQADEFIDLAQLKLKVGRDPSERLGP 180 FR LVEAVQRRGVRVTVVS+ A QP MIADELRRQAD F DL +L+ K+GRDPSER P Sbjct: 124 FRSLVEAVQRRGVRVTVVSTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAP 182 >ref|YP_577509.1| hypothetical protein Nham_2257 [Nitrobacter hamburgensis X14] gb|ABE63049.1| protein of unknown function DUF88 [Nitrobacter hamburgensis X14] Length = 206 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 136/186 (73%), Positives = 155/186 (83%) Query: 2 SPCGKIALFIDGPNLQATAKALGFDIDYNRLPELFQSRGALLRAFYYTPIVEDQEYSAVR 61 S KIALFIDG NL ATAK LGFDIDY RL + FQSRG L+RAFYYT I+EDQEYS++R Sbjct: 3 SASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSIR 62 Query: 62 PLLDWLDYNGYAVVTKLTKDFAEACGRRKAKGSMDIKLAVDVMELAEHVDQIILFSGDGN 121 PL+DWLDYNGY VVTK TK+F +A GRRK KG+MDI+LAVD MELAEHVDQI+LFSGDG+ Sbjct: 63 PLIDWLDYNGYTVVTKATKEFVDASGRRKVKGNMDIELAVDAMELAEHVDQIVLFSGDGD 122 Query: 122 FRCLVEAVQRRGVRVTVVSSFAIQPAMIADELRRQADEFIDLAQLKLKVGRDPSERLGPS 181 FR LVEAVQRRGVRVTVVS+ + QP MIADELRRQAD F DL +L+ K+GRDPSER P Sbjct: 123 FRSLVEAVQRRGVRVTVVSTISSQPPMIADELRRQADVFTDLVELQPKLGRDPSERSAPR 182 Query: 182 SGAIRY 187 A ++ Sbjct: 183 HHAPQF 188 >ref|YP_781945.1| hypothetical protein RPE_3028 [Rhodopseudomonas palustris BisA53] gb|ABJ06965.1| protein of unknown function DUF88 [Rhodopseudomonas palustris BisA53] Length = 209 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/180 (74%), Positives = 153/180 (85%) Query: 1 MSPCGKIALFIDGPNLQATAKALGFDIDYNRLPELFQSRGALLRAFYYTPIVEDQEYSAV 60 MS KIALFIDG NL ATAK LGFDIDY RL + FQSRG L+RAFYYT I+EDQEYS++ Sbjct: 1 MSASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSI 60 Query: 61 RPLLDWLDYNGYAVVTKLTKDFAEACGRRKAKGSMDIKLAVDVMELAEHVDQIILFSGDG 120 RPL+DWLDYNGY VVTK TK+F +A GRRK KG+MDI+LAVD MELAEHVDQI+LFSGDG Sbjct: 61 RPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHVDQIVLFSGDG 120 Query: 121 NFRCLVEAVQRRGVRVTVVSSFAIQPAMIADELRRQADEFIDLAQLKLKVGRDPSERLGP 180 +FR LVEAVQRRGVRVTV+S+ + QP MIADELRRQAD F DL +L+ K+GRDP+ER P Sbjct: 121 DFRSLVEAVQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKLGRDPAERPAP 180 >ref|NP_768975.1| hypothetical protein bll2335 [Bradyrhizobium japonicum USDA 110] dbj|BAC47600.1| bll2335 [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 137/180 (76%), Positives = 154/180 (85%), Gaps = 1/180 (0%) Query: 1 MSPCGKIALFIDGPNLQATAKALGFDIDYNRLPELFQSRGALLRAFYYTPIVEDQEYSAV 60 MS KIALFIDG NL AT+KALGFDIDY RL FQSRGALLRAFYYT ++EDQEYS++ Sbjct: 1 MSSIEKIALFIDGSNLHATSKALGFDIDYRRLLGEFQSRGALLRAFYYTTLIEDQEYSSI 60 Query: 61 RPLLDWLDYNGYAVVTKLTKDFAEA-CGRRKAKGSMDIKLAVDVMELAEHVDQIILFSGD 119 RPL+DWLDYNGY VVTK TK+F +A GRRK KGSMD+ LAV+ MELAEHVDQI+LFSGD Sbjct: 61 RPLIDWLDYNGYTVVTKFTKEFVDAITGRRKVKGSMDVDLAVNAMELAEHVDQIVLFSGD 120 Query: 120 GNFRCLVEAVQRRGVRVTVVSSFAIQPAMIADELRRQADEFIDLAQLKLKVGRDPSERLG 179 GNFR LVEA+QRRGVRVTVVS+ QPAM+AD+LRRQAD FIDLA+LK KVGRDP+ R G Sbjct: 121 GNFRSLVEALQRRGVRVTVVSTLCTQPAMVADDLRRQADVFIDLAELKPKVGRDPANRPG 180 >ref|ZP_01046047.1| hypothetical protein NB311A_00725 [Nitrobacter sp. Nb-311A] gb|EAQ35851.1| hypothetical protein NB311A_00725 [Nitrobacter sp. Nb-311A] Length = 205 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/176 (76%), Positives = 151/176 (85%) Query: 2 SPCGKIALFIDGPNLQATAKALGFDIDYNRLPELFQSRGALLRAFYYTPIVEDQEYSAVR 61 S KIALFIDG NL ATAK LGFDIDY RL + FQSRG L+RAFYYT I+EDQEYS++R Sbjct: 3 SASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSIR 62 Query: 62 PLLDWLDYNGYAVVTKLTKDFAEACGRRKAKGSMDIKLAVDVMELAEHVDQIILFSGDGN 121 PL+DWLDYNGY VVTK TK+F +A GRRK KG+MDI+LAVD MELAEHVDQI+LFSGDG+ Sbjct: 63 PLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHVDQIVLFSGDGD 122 Query: 122 FRCLVEAVQRRGVRVTVVSSFAIQPAMIADELRRQADEFIDLAQLKLKVGRDPSER 177 FR LVEAVQRRGVRVTVVS+ A QP MIADELRRQAD F DL +L+ K+GRDPSER Sbjct: 123 FRSLVEAVQRRGVRVTVVSTIASQPPMIADELRRQADVFTDLVELQPKLGRDPSER 178