BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0050.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773894.1| hypothetical protein blr7254 [Bradyrhizobium ja... 479 e-133 ref|ZP_01044874.1| hypothetical protein NB311A_07013 [Nitrobacte... 459 e-127 ref|YP_319622.1| hypothetical protein Nwi_3020 [Nitrobacter wino... 458 e-127 ref|YP_578580.1| hypothetical protein Nham_3390 [Nitrobacter ham... 457 e-127 ref|YP_001203562.1| hypothetical protein BRADO1432 [Bradyrhizobi... 457 e-126 >ref|NP_773894.1| hypothetical protein blr7254 [Bradyrhizobium japonicum USDA 110] sp|Q89E33.1|Y7254_BRAJA RecName: Full=UPF0283 membrane protein blr7254 dbj|BAC52519.1| blr7254 [Bradyrhizobium japonicum USDA 110] Length = 343 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 264/343 (76%), Positives = 301/343 (87%), Gaps = 1/343 (0%) Query: 1 MNEKTPPRRPATFKLDDPGVVVMDPDDGGRLTRGTIQIVPEAEPAQLPVPLDTPLVPARR 60 MNE++PPRRPATF+LDDPGVVV + D+ RL RGTIQI PE +PA LPVP++ ++PARR Sbjct: 1 MNERSPPRRPATFRLDDPGVVVTEADETARLGRGTIQITPEHDPATLPVPIEA-VLPARR 59 Query: 61 GFRWGTLFWSAVAGLVVLGTGLGVINLVEDLFARNEGLGVLGLGLAVIAAVALAVVTTRE 120 G WG LFWS +AGL +LG GLGV++L+EDLFAR+E LG +GL A + A+ALAVV RE Sbjct: 60 GLPWGALFWSGLAGLTLLGVGLGVVHLIEDLFARSESLGFVGLAFAFVTALALAVVIGRE 119 Query: 121 LVGLARLATIEKLHLRAAEVLISDDRAASRVIVADLLKLAHQTPQLARARSTLQSHTDDI 180 GLARLATIEKLH RAA VL SDDR SRVIV DLLK+AHQ PQLARAR+TL+SHT +I Sbjct: 120 AYGLARLATIEKLHQRAAAVLASDDRKESRVIVQDLLKIAHQNPQLARARATLESHTGEI 179 Query: 181 IDGADMIRLAERELMTPLDEEARRLVSTAAQRVSVVTAVSPRALFDVLFVFVASLRMIRQ 240 IDGADMIRLAERELM+PLD EARRLVS+AAQ+VS+VTAVSPRA DV+FVFVA+LR+IRQ Sbjct: 180 IDGADMIRLAERELMSPLDAEARRLVSSAAQKVSIVTAVSPRAAIDVMFVFVAALRLIRQ 239 Query: 241 LARLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLIQQMLGHGIAAKLSQRLGEGMLN 300 LA LYGGRPGALGMIRLLRHVIAHLAITGGMAASDSL+QQMLGHGIAAKLSQRLGEG+LN Sbjct: 240 LAYLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLVQQMLGHGIAAKLSQRLGEGVLN 299 Query: 301 GLLTARLGLAAIDVTRPLPFNALPRPALTDLAKDLIRKREEEE 343 GLLTARLGLAAI+VTRPLPF ALP P L+DLA DL+RK+E+EE Sbjct: 300 GLLTARLGLAAIEVTRPLPFAALPPPKLSDLATDLLRKKEDEE 342 >ref|ZP_01044874.1| hypothetical protein NB311A_07013 [Nitrobacter sp. Nb-311A] gb|EAQ36879.1| hypothetical protein NB311A_07013 [Nitrobacter sp. Nb-311A] Length = 348 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 242/345 (70%), Positives = 284/345 (82%), Gaps = 5/345 (1%) Query: 1 MNEKTPPRRPATFKLDDPGVVVMDPDDGG-RLTRGTIQIVPEAEPAQ----LPVPLDTPL 55 M+E++ RRP TFKLDDP VVV++ D+ R RG+I I PEAEP LP PL+ P Sbjct: 1 MSERSGQRRPVTFKLDDPHVVVLERDEAAARPARGSISITPEAEPEPEPVLLPEPLEMPP 60 Query: 56 VPARRGFRWGTLFWSAVAGLVVLGTGLGVINLVEDLFARNEGLGVLGLGLAVIAAVALAV 115 VPAR+GFRWG LFWS++AGL++LGT LG INL+ DLFAR+EGLG LGL LA + +A V Sbjct: 61 VPARKGFRWGVLFWSSLAGLILLGTILGAINLIGDLFARSEGLGFLGLTLAALFVIASIV 120 Query: 116 VTTRELVGLARLATIEKLHLRAAEVLISDDRAASRVIVADLLKLAHQTPQLARARSTLQS 175 + RE+ GLARLATIE LH RA + +DDR + +V DL+KLAH P LARAR+ L+S Sbjct: 121 IAVREIAGLARLATIENLHRRALAAIAADDRKGADAVVRDLVKLAHNDPHLARARAALRS 180 Query: 176 HTDDIIDGADMIRLAERELMTPLDEEARRLVSTAAQRVSVVTAVSPRALFDVLFVFVASL 235 H DIIDGAD++RLAERELM PLD+EARRLVS AAQRVS+VTA+SPRA+ DVLFVF A++ Sbjct: 181 HRADIIDGADLVRLAERELMAPLDQEARRLVSVAAQRVSIVTAISPRAVVDVLFVFAAAM 240 Query: 236 RMIRQLARLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLIQQMLGHGIAAKLSQRLG 295 R++RQLARLYGGRPG LGMIRL+RHVIAHLAITGGMAASD+LIQQMLG GIAAKLS RLG Sbjct: 241 RLVRQLARLYGGRPGTLGMIRLMRHVIAHLAITGGMAASDTLIQQMLGQGIAAKLSTRLG 300 Query: 296 EGMLNGLLTARLGLAAIDVTRPLPFNALPRPALTDLAKDLIRKRE 340 EG+LNGLLTARLGLAAIDVTRP+PF ALPRPAL DLAKDL+RKR+ Sbjct: 301 EGVLNGLLTARLGLAAIDVTRPMPFTALPRPALGDLAKDLLRKRD 345 >ref|YP_319622.1| hypothetical protein Nwi_3020 [Nitrobacter winogradskyi Nb-255] gb|ABA06270.1| Conserved hypothetical protein 1620 [Nitrobacter winogradskyi Nb-255] Length = 348 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 242/345 (70%), Positives = 285/345 (82%), Gaps = 5/345 (1%) Query: 1 MNEKTPPRRPATFKLDDPGVVVMDPDDGG-RLTRGTIQIVPEAEPAQ----LPVPLDTPL 55 M+E+T RRP TFKLDDP VVV++ D+ R RG+I I PEAEP LP DTP Sbjct: 1 MSERTGQRRPVTFKLDDPHVVVLERDEAAARPARGSISITPEAEPEPEPVLLPESPDTPP 60 Query: 56 VPARRGFRWGTLFWSAVAGLVVLGTGLGVINLVEDLFARNEGLGVLGLGLAVIAAVALAV 115 VPAR+GFRWG LFWS++AGL++LGT LG INL+ DLFAR+EGLG LGL LA + VA V Sbjct: 61 VPARKGFRWGVLFWSSLAGLILLGTVLGAINLIGDLFARSEGLGFLGLTLAALFVVASIV 120 Query: 116 VTTRELVGLARLATIEKLHLRAAEVLISDDRAASRVIVADLLKLAHQTPQLARARSTLQS 175 + RE++GLARLATIE LH RA + +DDR + +V DL+KLAH P LARAR+TL+S Sbjct: 121 IAAREILGLARLATIENLHRRALAAIAADDRKEADAVVRDLVKLAHNDPHLARARATLRS 180 Query: 176 HTDDIIDGADMIRLAERELMTPLDEEARRLVSTAAQRVSVVTAVSPRALFDVLFVFVASL 235 H+ DIIDGAD++RLAERELM PLD+EARRLVS AAQRVS+VTA+SPRA+ DVLFVF A++ Sbjct: 181 HSTDIIDGADLVRLAERELMAPLDQEARRLVSVAAQRVSIVTAISPRAVVDVLFVFAAAM 240 Query: 236 RMIRQLARLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLIQQMLGHGIAAKLSQRLG 295 R++RQLARLYGGRPG LGMIRL+RHVIAHLAITGG+AASD+LIQQM+G GIAAKLS RLG Sbjct: 241 RLVRQLARLYGGRPGTLGMIRLMRHVIAHLAITGGIAASDTLIQQMVGQGIAAKLSTRLG 300 Query: 296 EGMLNGLLTARLGLAAIDVTRPLPFNALPRPALTDLAKDLIRKRE 340 EG+LNGLLTARLGLAAIDVTRP+PF ALPRPAL DL KDL+RKR+ Sbjct: 301 EGVLNGLLTARLGLAAIDVTRPMPFTALPRPALGDLVKDLLRKRD 345 >ref|YP_578580.1| hypothetical protein Nham_3390 [Nitrobacter hamburgensis X14] gb|ABE64120.1| conserved hypothetical protein 1620 [Nitrobacter hamburgensis X14] Length = 348 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 241/348 (69%), Positives = 282/348 (81%), Gaps = 5/348 (1%) Query: 1 MNEKTPPRRPATFKLDDPGVVVMDPDD-GGRLTRGTIQIVPEAEPAQ----LPVPLDTPL 55 M+E++ RRP TFKLDDP VVV+DPD+ R TR +I I PEAEP LP + P Sbjct: 1 MSERSGLRRPVTFKLDDPNVVVLDPDEEAARPTRSSISITPEAEPEPEPVLLPEAPEMPP 60 Query: 56 VPARRGFRWGTLFWSAVAGLVVLGTGLGVINLVEDLFARNEGLGVLGLGLAVIAAVALAV 115 VPAR+GFRWG LFWS++ GLVVLGT LG INL+ DLFARNE LG LGL LA + VA V Sbjct: 61 VPARKGFRWGVLFWSSLGGLVVLGTVLGAINLIHDLFARNETLGFLGLVLAALFVVASIV 120 Query: 116 VTTRELVGLARLATIEKLHLRAAEVLISDDRAASRVIVADLLKLAHQTPQLARARSTLQS 175 + RE+ GLARL+TIE +H RA + +DDR + +V DL+KLAH P LARAR+TL+S Sbjct: 121 IAAREIAGLARLSTIENMHRRALAAIAADDRKGADAVVRDLVKLAHDNPHLARARATLRS 180 Query: 176 HTDDIIDGADMIRLAERELMTPLDEEARRLVSTAAQRVSVVTAVSPRALFDVLFVFVASL 235 H DIIDGAD++RLAERELM PLD+EARRLVS AAQRVS+VTA+SPRA+ DVLFVF A++ Sbjct: 181 HGSDIIDGADLVRLAERELMAPLDQEARRLVSVAAQRVSIVTAISPRAVVDVLFVFAAAM 240 Query: 236 RMIRQLARLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLIQQMLGHGIAAKLSQRLG 295 R++RQLARLYGGRPG LGMIRL+RHVIAHLAITGGMAASD++IQQMLG GI AKLS RLG Sbjct: 241 RLVRQLARLYGGRPGTLGMIRLIRHVIAHLAITGGMAASDTVIQQMLGQGIVAKLSTRLG 300 Query: 296 EGMLNGLLTARLGLAAIDVTRPLPFNALPRPALTDLAKDLIRKREEEE 343 EG+LNGLLTARLGLAAIDVTRP+PF ALPRPAL DLAKDL+RKR ++ Sbjct: 301 EGVLNGLLTARLGLAAIDVTRPMPFTALPRPALGDLAKDLLRKRRDDN 348 >ref|YP_001203562.1| hypothetical protein BRADO1432 [Bradyrhizobium sp. ORS 278] emb|CAL75325.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 343 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 264/343 (76%), Positives = 296/343 (86%), Gaps = 1/343 (0%) Query: 1 MNEKTPPRRPATFKLDDPGVVVMDPDDGGRLTRGTIQIVPEAEPAQLPVPLDTPLVPARR 60 M+++ PRRP TF+LDDP VVV+D D+ GR RGTIQI PEA+PAQLPVP+D ++PARR Sbjct: 1 MSDRAKPRRPQTFRLDDPDVVVVDADEAGRPGRGTIQITPEADPAQLPVPVDV-VLPARR 59 Query: 61 GFRWGTLFWSAVAGLVVLGTGLGVINLVEDLFARNEGLGVLGLGLAVIAAVALAVVTTRE 120 GFRWG LFW +V+GLV+LG GLGV L+EDLFAR+E LG +G G A AAVALA V RE Sbjct: 60 GFRWGALFWGSVSGLVLLGLGLGVTRLIEDLFARSEALGYVGSGFAAAAAVALAAVIGRE 119 Query: 121 LVGLARLATIEKLHLRAAEVLISDDRAASRVIVADLLKLAHQTPQLARARSTLQSHTDDI 180 GL RLATIEKLH RAA VL+SDDRA SR ++++LL++AH P+LAR R+ L H DDI Sbjct: 120 TYGLVRLATIEKLHARAAAVLLSDDRAESRAVISELLRIAHANPRLARPRAELAGHADDI 179 Query: 181 IDGADMIRLAERELMTPLDEEARRLVSTAAQRVSVVTAVSPRALFDVLFVFVASLRMIRQ 240 IDGADMI+LAERELMTPLD EARRLVS AAQRVSVVTAVSPRA+ DVLFVFVASLRMIRQ Sbjct: 180 IDGADMIKLAERELMTPLDIEARRLVSVAAQRVSVVTAVSPRAMIDVLFVFVASLRMIRQ 239 Query: 241 LARLYGGRPGALGMIRLLRHVIAHLAITGGMAASDSLIQQMLGHGIAAKLSQRLGEGMLN 300 LA LYGGRPGALGMI LLRHVIAHLAITGGMAASDSLIQQ+LGHGIAAKLSQRLGEG+LN Sbjct: 240 LAMLYGGRPGALGMISLLRHVIAHLAITGGMAASDSLIQQVLGHGIAAKLSQRLGEGVLN 299 Query: 301 GLLTARLGLAAIDVTRPLPFNALPRPALTDLAKDLIRKREEEE 343 GLLTARLGLAAIDVTRP+PF ALPRPAL DLAKDL+RK+E EE Sbjct: 300 GLLTARLGLAAIDVTRPMPFAALPRPALADLAKDLLRKQENEE 342