BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0044.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773897.1| oxidase [Bradyrhizobium japonicum USDA 110] >gi... 716 0.0 ref|YP_578584.1| twin-arginine translocation pathway signal [Nit... 628 e-178 ref|ZP_01044876.1| Oxidoreductase, molybdopterin binding [Nitrob... 610 e-172 ref|YP_319624.1| oxidoreductase, molybdopterin binding [Nitrobac... 604 e-171 ref|ZP_07027768.1| oxidoreductase molybdopterin binding [Afipia ... 579 e-163 >ref|NP_773897.1| oxidase [Bradyrhizobium japonicum USDA 110] dbj|BAC52522.1| blr7257 [Bradyrhizobium japonicum USDA 110] Length = 461 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/399 (86%), Positives = 365/399 (91%) Query: 1 MLDRRDLMKRAGLAALVTGLGSRGAFALDTVTLPFGNGERPLVRYPQKRPMIGLTARPPQ 60 M DRRDL+K AGLAA+ L S A ALDTVTLPF NGERPLV+YPQKRPMIGLT+RPPQ Sbjct: 63 MFDRRDLLKGAGLAAMAATLNSTKALALDTVTLPFANGERPLVKYPQKRPMIGLTSRPPQ 122 Query: 61 LETPFAIFNDGPITPNNAFFVRYHLADLPYNLDPDKFTLEIKGKVDKPLKLSLKDIRKLK 120 LETPFA+FNDGPITPNNAFFVRYHL+DLPYNLDPDKFTLEIKGKVDK LKLSLKDIRK+K Sbjct: 123 LETPFAVFNDGPITPNNAFFVRYHLSDLPYNLDPDKFTLEIKGKVDKLLKLSLKDIRKMK 182 Query: 121 ATEIVAVNQCSGNSRGFFSPRVAGGQLGNGAMGCARWHGVPLKTVLDMAGVQAGAKQVTF 180 ATEIVAVNQCSGNSRGFF PRVAGGQL NGAMG ARW GVPLKTVL+MAGVQAGAKQVTF Sbjct: 183 ATEIVAVNQCSGNSRGFFEPRVAGGQLANGAMGNARWRGVPLKTVLEMAGVQAGAKQVTF 242 Query: 181 NGMDGPVSDKTPDFVKALDIDHARDGEVMLAWGMNGEDLPFLNGFPLRLVVPGYYGTYWV 240 NGMDGP SDKTPDFVKALDIDHA D EVMLA+GMNGEDLPFLNGFPLRL+VPGYYGTYWV Sbjct: 243 NGMDGPASDKTPDFVKALDIDHASDVEVMLAYGMNGEDLPFLNGFPLRLIVPGYYGTYWV 302 Query: 241 KHLNEITVIDNVFEGFWMKSAYRIPDTPNNAVEPGTAPKATIPINRFTVRSFITSVADGA 300 KHLNEITVIDNV++GFWMKSAYRIPDTPNNA+EPGT PKATIPINRFT+RSFITSV DGA Sbjct: 303 KHLNEITVIDNVYDGFWMKSAYRIPDTPNNAIEPGTTPKATIPINRFTIRSFITSVPDGA 362 Query: 301 KLKAGRTMLRGIAFDGGKGIKEVMVSTDGGKNWTPAKLGKDLGKYAFREWKLPVKLAAGP 360 KLKAG T LRGIAFDGGKGIK+V VSTDGGK WT AKLGKDLGKY+FREWKLPVKLAAG Sbjct: 363 KLKAGATTLRGIAFDGGKGIKDVAVSTDGGKTWTSAKLGKDLGKYSFREWKLPVKLAAGT 422 Query: 361 AELKVRATNKAGDTQPMDPLWNPAGYLRNVVETVRVTAA 399 ELKVRAT G+TQP P WNPAGYLRNVVETVRV+ A Sbjct: 423 VELKVRATGNGGETQPDQPRWNPAGYLRNVVETVRVSVA 461 >ref|YP_578584.1| twin-arginine translocation pathway signal [Nitrobacter hamburgensis X14] gb|ABE64124.1| sulfite dehydrogenase (cytochrome) subunit SorA apoprotein [Nitrobacter hamburgensis X14] Length = 402 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/402 (76%), Positives = 341/402 (84%), Gaps = 3/402 (0%) Query: 1 MLDRRDLMKRAGLAALVTGLGSR---GAFALDTVTLPFGNGERPLVRYPQKRPMIGLTAR 57 MLDRR+++KR G + S AFALD VTLPF NGERPLV+YPQKR MIG T+R Sbjct: 1 MLDRREMLKRVGAGLALGAAASLPPFKAFALDNVTLPFDNGERPLVKYPQKRMMIGQTSR 60 Query: 58 PPQLETPFAIFNDGPITPNNAFFVRYHLADLPYNLDPDKFTLEIKGKVDKPLKLSLKDIR 117 PPQLETPF++FN+ ITPN+AFFVRYHLADLP N+DP FTLEIKGKVD+PLKLSLKDIR Sbjct: 61 PPQLETPFSVFNESVITPNDAFFVRYHLADLPLNIDPATFTLEIKGKVDRPLKLSLKDIR 120 Query: 118 KLKATEIVAVNQCSGNSRGFFSPRVAGGQLGNGAMGCARWHGVPLKTVLDMAGVQAGAKQ 177 K+KATE+VAVNQCSGNSRGF SPRVAGGQ GNGAMG ARW GVPLK VLD AGVQ GAKQ Sbjct: 121 KMKATEVVAVNQCSGNSRGFSSPRVAGGQSGNGAMGNARWRGVPLKAVLDQAGVQRGAKQ 180 Query: 178 VTFNGMDGPVSDKTPDFVKALDIDHARDGEVMLAWGMNGEDLPFLNGFPLRLVVPGYYGT 237 V F+GMDGPVSDKTPDF KALDIDH+RDGEVMLA+ MN DLPFLNGFPLRLVVPGYYGT Sbjct: 181 VVFDGMDGPVSDKTPDFAKALDIDHSRDGEVMLAYLMNERDLPFLNGFPLRLVVPGYYGT 240 Query: 238 YWVKHLNEITVIDNVFEGFWMKSAYRIPDTPNNAVEPGTAPKATIPINRFTVRSFITSVA 297 YWVKHLNEITVID+V++ FWMK+AYRIPD VEPGTAPKAT+PINRF VRSFIT+VA Sbjct: 241 YWVKHLNEITVIDSVYDNFWMKTAYRIPDNACACVEPGTAPKATVPINRFNVRSFITNVA 300 Query: 298 DGAKLKAGRTMLRGIAFDGGKGIKEVMVSTDGGKNWTPAKLGKDLGKYAFREWKLPVKLA 357 DGAKL G +L+GIAFDGG GIKEV VS DGGK W A+LG++ GKY+FREWK+PVKL Sbjct: 301 DGAKLATGGKLLKGIAFDGGTGIKEVAVSIDGGKTWKAARLGRNYGKYSFREWKVPVKLT 360 Query: 358 AGPAELKVRATNKAGDTQPMDPLWNPAGYLRNVVETVRVTAA 399 AGP ELKVRAT+ G QP + LWNPAGY+RNV+ETVRVTAA Sbjct: 361 AGPHELKVRATSNGGQVQPAEALWNPAGYMRNVIETVRVTAA 402 >ref|ZP_01044876.1| Oxidoreductase, molybdopterin binding [Nitrobacter sp. Nb-311A] gb|EAQ36881.1| Oxidoreductase, molybdopterin binding [Nitrobacter sp. Nb-311A] Length = 401 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 294/401 (73%), Positives = 339/401 (84%), Gaps = 2/401 (0%) Query: 1 MLDRRDLMKR--AGLAALVTGLGSRGAFALDTVTLPFGNGERPLVRYPQKRPMIGLTARP 58 M DRRD++KR AGLA V A ALD+VT+PF NGERPLV+YPQK PMIG+T+RP Sbjct: 1 MPDRRDVLKRIGAGLALSVGLTPFFKALALDSVTMPFDNGERPLVKYPQKCPMIGITSRP 60 Query: 59 PQLETPFAIFNDGPITPNNAFFVRYHLADLPYNLDPDKFTLEIKGKVDKPLKLSLKDIRK 118 PQLETPF +FN+GPITPN+AFFVRYHLAD+P ++DPD FTLEIKGKVD+PLKLSL+DI+K Sbjct: 61 PQLETPFPVFNEGPITPNDAFFVRYHLADIPLDIDPDTFTLEIKGKVDRPLKLSLQDIKK 120 Query: 119 LKATEIVAVNQCSGNSRGFFSPRVAGGQLGNGAMGCARWHGVPLKTVLDMAGVQAGAKQV 178 +K TEIVAVNQCSGNSRGFF+PRVAGGQLG+GAMG ARW GV LKTVLD AGVQ GAKQV Sbjct: 121 MKQTEIVAVNQCSGNSRGFFNPRVAGGQLGHGAMGNARWRGVSLKTVLDRAGVQPGAKQV 180 Query: 179 TFNGMDGPVSDKTPDFVKALDIDHARDGEVMLAWGMNGEDLPFLNGFPLRLVVPGYYGTY 238 F GMDGPVSD+TPDF KALD+DHARDGEVMLA+ MNG +LPFLNGFPLRLVVPGYYGTY Sbjct: 181 VFGGMDGPVSDRTPDFAKALDVDHARDGEVMLAYLMNGRELPFLNGFPLRLVVPGYYGTY 240 Query: 239 WVKHLNEITVIDNVFEGFWMKSAYRIPDTPNNAVEPGTAPKATIPINRFTVRSFITSVAD 298 W+KHLNEITVID+ ++ FWMK+AYRIPD VEPGT PKAT+PINR VRSFIT++ + Sbjct: 241 WMKHLNEITVIDSTYDNFWMKTAYRIPDNGCACVEPGTTPKATVPINRLNVRSFITNIPE 300 Query: 299 GAKLKAGRTMLRGIAFDGGKGIKEVMVSTDGGKNWTPAKLGKDLGKYAFREWKLPVKLAA 358 GA+L+ G +L+GIAFDGG GI+ V VS D GK W A+LG+D G+YAFREWK+PVKL A Sbjct: 301 GAQLRRGGRILKGIAFDGGTGIRNVEVSVDDGKTWKSARLGRDYGRYAFREWKIPVKLTA 360 Query: 359 GPAELKVRATNKAGDTQPMDPLWNPAGYLRNVVETVRVTAA 399 GP ELKVRAT+ GD QP + WNPAGY+RNV ETVRVT + Sbjct: 361 GPHELKVRATSNGGDAQPAEARWNPAGYMRNVTETVRVTVS 401 >ref|YP_319624.1| oxidoreductase, molybdopterin binding [Nitrobacter winogradskyi Nb-255] gb|ABA06272.1| sulfite dehydrogenase (cytochrome) subunit SorA apoprotein [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 290/400 (72%), Positives = 328/400 (82%), Gaps = 1/400 (0%) Query: 1 MLDRRDLMKRAGLA-ALVTGLGSRGAFALDTVTLPFGNGERPLVRYPQKRPMIGLTARPP 59 MLDRRD+MKR G AL GL ALD VT+PF NGERPLV+YPQKRPMIG+T+RPP Sbjct: 1 MLDRRDMMKRIGAGLALGVGLAPLKVLALDRVTMPFDNGERPLVKYPQKRPMIGITSRPP 60 Query: 60 QLETPFAIFNDGPITPNNAFFVRYHLADLPYNLDPDKFTLEIKGKVDKPLKLSLKDIRKL 119 QLETPF +FN+GPITPN+AFFVRYHLAD+P ++DP FTLEIKGKVD PL+LSL+DI+ + Sbjct: 61 QLETPFPVFNEGPITPNDAFFVRYHLADIPLDIDPATFTLEIKGKVDHPLRLSLEDIKAM 120 Query: 120 KATEIVAVNQCSGNSRGFFSPRVAGGQLGNGAMGCARWHGVPLKTVLDMAGVQAGAKQVT 179 TEIVAVNQCSGNSRGF PRVAGGQLG+GAMG ARW GV LKTVLD AGVQ GAKQV Sbjct: 121 AQTEIVAVNQCSGNSRGFVDPRVAGGQLGHGAMGNARWRGVSLKTVLDRAGVQHGAKQVV 180 Query: 180 FNGMDGPVSDKTPDFVKALDIDHARDGEVMLAWGMNGEDLPFLNGFPLRLVVPGYYGTYW 239 F GMDGPVSD TPDF KALD+DHARDGEVMLA MNG DLPFLNGFPLRLVVPGYYGTYW Sbjct: 181 FGGMDGPVSDTTPDFAKALDVDHARDGEVMLAHLMNGRDLPFLNGFPLRLVVPGYYGTYW 240 Query: 240 VKHLNEITVIDNVFEGFWMKSAYRIPDTPNNAVEPGTAPKATIPINRFTVRSFITSVADG 299 +KHLNEITVIDN ++ FWMK AYRIPD VEPGT P AT+PI R VRSFIT++ +G Sbjct: 241 IKHLNEITVIDNTYDNFWMKKAYRIPDNACACVEPGTTPTATVPIGRLNVRSFITNIPEG 300 Query: 300 AKLKAGRTMLRGIAFDGGKGIKEVMVSTDGGKNWTPAKLGKDLGKYAFREWKLPVKLAAG 359 A+L+ G +L+GIAFDGG GI+ V VS DGGK W +LG+D G+YAFREWK PV+LA G Sbjct: 301 AQLRRGGKILKGIAFDGGTGIRNVEVSVDGGKTWKGTRLGRDYGRYAFREWKTPVRLAPG 360 Query: 360 PAELKVRATNKAGDTQPMDPLWNPAGYLRNVVETVRVTAA 399 P ELKVRAT+ GD QP + WNPAGY+RNV+ETVRVT + Sbjct: 361 PHELKVRATSNGGDVQPAEARWNPAGYMRNVIETVRVTVS 400 >ref|ZP_07027768.1| oxidoreductase molybdopterin binding [Afipia sp. 1NLS2] gb|EFI50589.1| oxidoreductase molybdopterin binding [Afipia sp. 1NLS2] Length = 401 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 284/403 (70%), Positives = 325/403 (80%), Gaps = 6/403 (1%) Query: 1 MLDRRDLMKRAGLAALVTGLGSRG----AFALDTVTLPFGNGERPLVRYPQKRPMIGLTA 56 M+DRR +++ G AL+ G G AFA +TVTLPFGNG RPL ++PQKR MI T+ Sbjct: 1 MIDRRSVLQ--GGVALLAGTSLLGKSTLAFAEETVTLPFGNGTRPLGKFPQKRTMIVQTS 58 Query: 57 RPPQLETPFAIFNDGPITPNNAFFVRYHLADLPYNLDPDKFTLEIKGKVDKPLKLSLKDI 116 RPPQLETPF++FN+ ITPN+AFFVRYHLA +P +DP KFT+++KGKVDKPLKLSL D+ Sbjct: 59 RPPQLETPFSVFNESVITPNDAFFVRYHLAGIPLEIDPAKFTVDVKGKVDKPLKLSLADL 118 Query: 117 RKLKATEIVAVNQCSGNSRGFFSPRVAGGQLGNGAMGCARWHGVPLKTVLDMAGVQAGAK 176 +K+ + IVAV QCSGNSR F PRVAGGQ GNGAMG ARW GVPLK VL+ AGVQAGAK Sbjct: 119 KKMPSKTIVAVTQCSGNSRAFSDPRVAGGQSGNGAMGNARWKGVPLKAVLEKAGVQAGAK 178 Query: 177 QVTFNGMDGPVSDKTPDFVKALDIDHARDGEVMLAWGMNGEDLPFLNGFPLRLVVPGYYG 236 QV F G+DGPV D TPDF KALD+D A +GEVMLA+ MNGEDLP LNGFPLRLVVPGYYG Sbjct: 179 QVVFGGLDGPVMDTTPDFAKALDLDVATNGEVMLAYSMNGEDLPMLNGFPLRLVVPGYYG 238 Query: 237 TYWVKHLNEITVIDNVFEGFWMKSAYRIPDTPNNAVEPGTAPKATIPINRFTVRSFITSV 296 TYWVKHLNEITVID V++ FWMK+AYRIPD VEPGTAPKAT+PINRFTVRSFITSV Sbjct: 239 TYWVKHLNEITVIDKVYDNFWMKTAYRIPDNECACVEPGTAPKATVPINRFTVRSFITSV 298 Query: 297 ADGAKLKAGRTMLRGIAFDGGKGIKEVMVSTDGGKNWTPAKLGKDLGKYAFREWKLPVKL 356 GAKLK+G LRGIAFDGG GIK+V VSTDGGK+W AKLGKDLG Y+FREW LPVKL Sbjct: 299 QSGAKLKSGNITLRGIAFDGGTGIKQVDVSTDGGKSWKAAKLGKDLGNYSFREWTLPVKL 358 Query: 357 AAGPAELKVRATNKAGDTQPMDPLWNPAGYLRNVVETVRVTAA 399 +AG ELKVRAT+ G QP ++NPAGY+RNV+ET VT A Sbjct: 359 SAGVHELKVRATSNGGKVQPEKAVFNPAGYMRNVIETTSVTVA 401