BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0224.0043.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01044877.1| cytochrome c oxidoreductase subunit B [Nitrob...   141   3e-32
ref|YP_319625.1| cytochrome c oxidoreductase subunit B [Nitrobac...   139   2e-31
ref|YP_578585.1| cytochrome c oxidoreductase subunit B [Nitrobac...   139   2e-31
ref|NP_773898.1| sulfite:cytochrome c oxidoreductase subunit B [...   136   1e-30
ref|ZP_07027769.1| cytochrome c oxidoreductase subunit B [Afipia...   128   3e-28

>ref|ZP_01044877.1| cytochrome c oxidoreductase subunit B [Nitrobacter sp. Nb-311A]
 gb|EAQ36882.1| cytochrome c oxidoreductase subunit B [Nitrobacter sp. Nb-311A]
          Length = 110

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 75/94 (79%)

Query: 10  ATIAALSIGAAVAAPVNYTVPEETAAFKPGPNLEVVQNNCTACHSADYIKTQPQGEKFKK 69
           A++ A +   A A P++Y +P ET  FK GPNL VV+NNC ACHSADYI TQP+G KFKK
Sbjct: 17  ASVCAFTPTTATAEPLSYKLPRETIEFKAGPNLGVVKNNCLACHSADYIMTQPRGPKFKK 76

Query: 70  DFWQAEVTKMIKVYGAPIDEADVGKIVEYLSATY 103
           DFWQAEV KMIK YGA IDEAD+GKIVEYL+ATY
Sbjct: 77  DFWQAEVNKMIKAYGAQIDEADIGKIVEYLAATY 110


>ref|YP_319625.1| cytochrome c oxidoreductase subunit B [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA06273.1| sulfite dehydrogenase (cytochrome) subunit SorB [Nitrobacter
           winogradskyi Nb-255]
          Length = 110

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 77/99 (77%), Gaps = 3/99 (3%)

Query: 5   LLPSLATIAALSIGAAVAAPVNYTVPEETAAFKPGPNLEVVQNNCTACHSADYIKTQPQG 64
           L  SL T A+ +   A A P++Y +P ET  FKPGPNL+VV+NNC ACHSADYI TQP+G
Sbjct: 15  LAASLYTCASTT---ATAGPLSYELPRETIEFKPGPNLDVVKNNCLACHSADYIATQPRG 71

Query: 65  EKFKKDFWQAEVTKMIKVYGAPIDEADVGKIVEYLSATY 103
            KF KDFWQAEV KMI  YGA IDEAD+GKIV+YL+ATY
Sbjct: 72  PKFGKDFWQAEVNKMIGAYGAQIDEADIGKIVDYLAATY 110


>ref|YP_578585.1| cytochrome c oxidoreductase subunit B [Nitrobacter hamburgensis
           X14]
 gb|ABE64125.1| sulfite dehydrogenase (cytochrome) subunit SorB [Nitrobacter
           hamburgensis X14]
          Length = 110

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 12  IAALSIGAAVAAPVNYTVPEETAAFKPGPNLEVVQNNCTACHSADYIKTQPQGEKFKKDF 71
           I A +   A A P+ Y +P++ A FKPGPNL+VV+NNCTACHSADY++TQP+G KF KDF
Sbjct: 19  IGAFAPTTAGAKPIAYKLPDKAAEFKPGPNLDVVKNNCTACHSADYVQTQPRGPKFTKDF 78

Query: 72  WQAEVTKMIKVYGAPIDEADVGKIVEYLSATY 103
           WQAEV KMIKVYGA I+EAD+GKIV+YL+AT+
Sbjct: 79  WQAEVNKMIKVYGAQIEEADIGKIVDYLTATH 110


>ref|NP_773898.1| sulfite:cytochrome c oxidoreductase subunit B [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC52523.1| blr7258 [Bradyrhizobium japonicum USDA 110]
          Length = 104

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 71/80 (88%), Gaps = 1/80 (1%)

Query: 24  PVNYTVPEETAAFKPGPNLEVVQNNCTACHSADYIKTQPQGEKFKKDFWQAEVTKMIKVY 83
           PVNY +P+E AAFKPGPNLEVVQ NC+ACHSADYI TQP   K KK FWQAEVTKMIKVY
Sbjct: 26  PVNYQLPDEVAAFKPGPNLEVVQGNCSACHSADYINTQPP-MKDKKGFWQAEVTKMIKVY 84

Query: 84  GAPIDEADVGKIVEYLSATY 103
           GAPID+ADVGKIV+YL+ATY
Sbjct: 85  GAPIDDADVGKIVDYLAATY 104


>ref|ZP_07027769.1| cytochrome c oxidoreductase subunit B [Afipia sp. 1NLS2]
 gb|EFI50590.1| cytochrome c oxidoreductase subunit B [Afipia sp. 1NLS2]
          Length = 110

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 70/89 (78%)

Query: 15  LSIGAAVAAPVNYTVPEETAAFKPGPNLEVVQNNCTACHSADYIKTQPQGEKFKKDFWQA 74
           +++    A PV+  +P+ETA FKPGPNL+VVQ NCT CHSADY++TQP+G KF KDFW A
Sbjct: 21  MAVSGLQAKPVSIKLPQETAQFKPGPNLDVVQANCTGCHSADYVQTQPRGPKFGKDFWTA 80

Query: 75  EVTKMIKVYGAPIDEADVGKIVEYLSATY 103
           EV KMIKVYGAPI+  D+ KIV+YL+  Y
Sbjct: 81  EVNKMIKVYGAPIEANDIPKIVDYLATAY 109