BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0040.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578587.1| hypothetical protein Nham_3397 [Nitrobacter ham... 305 3e-81 ref|ZP_01044880.1| hypothetical protein NB311A_07043 [Nitrobacte... 301 6e-80 ref|YP_487549.1| hypothetical protein RPB_3945 [Rhodopseudomonas... 281 7e-74 ref|YP_783220.1| hypothetical protein RPE_4316 [Rhodopseudomonas... 278 6e-73 ref|YP_001990772.1| hypothetical protein Rpal_1769 [Rhodopseudom... 267 7e-70 >ref|YP_578587.1| hypothetical protein Nham_3397 [Nitrobacter hamburgensis X14] gb|ABE64127.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 228 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 148/197 (75%), Positives = 166/197 (84%), Gaps = 3/197 (1%) Query: 31 MLSLPSAM--PARAAELSSGIMQLYTSVSIYPPSATGMTVCYGFVCRRREMLDFSAADRA 88 ML + AM PA AAELS GI QLYTSVSIYPP+A MTVCYGFVCRRRE LDF++ DRA Sbjct: 32 MLFMAQAMDGPAGAAELSPGIAQLYTSVSIYPPTAKSMTVCYGFVCRRREGLDFTSTDRA 91 Query: 89 ALAKIMAAGRANAAAERAAVQKAVIWFDRRMGPILGTDKRVAKADFRANDDKHNYDCWDT 148 AL +I+AAGR++AAAER AVQKAV+WFDRRMGPILGT KRVA+ADFRA D KHN+DCWDT Sbjct: 92 ALTRILAAGRSSAAAERRAVQKAVVWFDRRMGPILGTSKRVARADFRAGDYKHNFDCWDT 151 Query: 149 TRNTTSLMLVMQAWNLFRFHDVGDPHYRGFSLA-QTPHNTAVLVERATKVEWAVDLWPRG 207 TRN TSL+ V+Q W LF+FH VG+PHYRG +L QTPHNTAVLVERAT VEW VD+WPRG Sbjct: 152 TRNVTSLLPVLQDWRLFKFHTVGNPHYRGNTLVLQTPHNTAVLVERATHVEWVVDMWPRG 211 Query: 208 YLQPPDVMTVAKWVTED 224 Y Q PDVMTV +WV ED Sbjct: 212 YAQLPDVMTVDQWVKED 228 >ref|ZP_01044880.1| hypothetical protein NB311A_07043 [Nitrobacter sp. Nb-311A] gb|EAQ36885.1| hypothetical protein NB311A_07043 [Nitrobacter sp. Nb-311A] Length = 197 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 138/197 (70%), Positives = 165/197 (83%), Gaps = 1/197 (0%) Query: 29 VLMLSLPSAMPARAAELSSGIMQLYTSVSIYPPSATGMTVCYGFVCRRREMLDFSAADRA 88 +L+++ P+ AAELS GI QLYTSVSIYPP+A MTVCYGFVCRRRE LDF +ADRA Sbjct: 1 MLLITEVVDYPSEAAELSPGISQLYTSVSIYPPTAESMTVCYGFVCRRRETLDFKSADRA 60 Query: 89 ALAKIMAAGRANAAAERAAVQKAVIWFDRRMGPILGTDKRVAKADFRANDDKHNYDCWDT 148 AL +I+AAGR++AAAER A+QKAV+WFDRRMG I+GTDKRVA+ADFRA DDKHN+DCWDT Sbjct: 61 ALRRILAAGRSSAAAERLAIQKAVVWFDRRMGSIIGTDKRVARADFRAGDDKHNFDCWDT 120 Query: 149 TRNTTSLMLVMQAWNLFRFHDVGDPHYRGFSLA-QTPHNTAVLVERATKVEWAVDLWPRG 207 TRN TSL+LV+Q W L +FH VG PHYRG +L QTPHNTAVL+ERAT+VEW VD+W RG Sbjct: 121 TRNVTSLLLVLQGWGLLKFHTVGSPHYRGNTLVLQTPHNTAVLLERATRVEWVVDMWTRG 180 Query: 208 YLQPPDVMTVAKWVTED 224 + Q PDVM V +W+ +D Sbjct: 181 FAQLPDVMPVDQWIKQD 197 >ref|YP_487549.1| hypothetical protein RPB_3945 [Rhodopseudomonas palustris HaA2] gb|ABD08638.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 217 Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 135/204 (66%), Positives = 157/204 (76%), Gaps = 1/204 (0%) Query: 22 GFAGALAVLMLSLPSAMPARAAELSSGIMQLYTSVSIYPPSATGMTVCYGFVCRRREMLD 81 G A LAV+ S +PARA LS + QLY+SVSI PPSA+GMTVCYGFVCRRR L Sbjct: 14 GLALVLAVISAVGASLLPARADPLSREVAQLYSSVSINPPSASGMTVCYGFVCRRRHELA 73 Query: 82 FSAADRAALAKIMAAGRANAAAERAAVQKAVIWFDRRMGPILGTDKRVAKADFRANDDKH 141 F DRAAL++IMA+GRA+ AAERAAVQKAV+W DRR+GP+LGTDKR+A+ADFR DDKH Sbjct: 74 FGPGDRAALSRIMASGRASPAAERAAVQKAVVWLDRRLGPVLGTDKRIARADFRYFDDKH 133 Query: 142 NYDCWDTTRNTTSLMLVMQAWNLFRFHDVGDPHYRGFSLA-QTPHNTAVLVERATKVEWA 200 N+DCWDTTRNTTSL+LVMQ W L + H VGDP YRG L QTPHNTAVLVER + +W Sbjct: 134 NFDCWDTTRNTTSLLLVMQGWGLLKHHSVGDPKYRGNVLVLQTPHNTAVLVERGSGAQWV 193 Query: 201 VDLWPRGYLQPPDVMTVAKWVTED 224 VD+W R Y Q P+VM V +WV D Sbjct: 194 VDMWTRAYAQTPEVMPVDQWVKLD 217 >ref|YP_783220.1| hypothetical protein RPE_4316 [Rhodopseudomonas palustris BisA53] gb|ABJ08240.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 212 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 136/200 (68%), Positives = 160/200 (80%), Gaps = 2/200 (1%) Query: 26 ALAVLMLSLPSAMPARAAELSSGIMQLYTSVSIYPPSATGMTVCYGFVCRRREMLDFSAA 85 ALAVL L +A A AAE+S QLYTSVSI+PPSA MTVCYGFVCRRR + D S Sbjct: 14 ALAVL-LCAATAQTATAAEVSPAQAQLYTSVSIFPPSANSMTVCYGFVCRRRHVFDISPG 72 Query: 86 DRAALAKIMAAGRANAAAERAAVQKAVIWFDRRMGPILGTDKRVAKADFRANDDKHNYDC 145 DR ALA+IMAAGR NAAAERAAVQKAVIWFDRR+GP++GT R+A+ADFR+ +DK NYDC Sbjct: 73 DRRALAQIMAAGRGNAAAERAAVQKAVIWFDRRLGPVIGTTTRIARADFRSGNDKANYDC 132 Query: 146 WDTTRNTTSLMLVMQAWNLFRFHDVGDPHYRGFSLA-QTPHNTAVLVERATKVEWAVDLW 204 WDTTRNTTSL+L+MQ W L ++H VGDPHYRG L QTPHNTAVL+ERAT VEW+VD+W Sbjct: 133 WDTTRNTTSLLLLMQQWGLLKYHSVGDPHYRGNVLVLQTPHNTAVLLERATGVEWSVDMW 192 Query: 205 PRGYLQPPDVMTVAKWVTED 224 Y +PP+VM + +WV +D Sbjct: 193 TTAYAKPPEVMPIPQWVKQD 212 >ref|YP_001990772.1| hypothetical protein Rpal_1769 [Rhodopseudomonas palustris TIE-1] gb|ACF00297.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 215 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 133/187 (71%), Positives = 154/187 (82%), Gaps = 1/187 (0%) Query: 39 PARAAELSSGIMQLYTSVSIYPPSATGMTVCYGFVCRRREMLDFSAADRAALAKIMAAGR 98 PA AAELSS + LY+SVSI+PPSA GMTVCYGFVCRRR L FSA DRAAL++IMA+G+ Sbjct: 29 PAGAAELSSQVSYLYSSVSIFPPSAKGMTVCYGFVCRRRYELAFSAGDRAALSRIMASGK 88 Query: 99 ANAAAERAAVQKAVIWFDRRMGPILGTDKRVAKADFRANDDKHNYDCWDTTRNTTSLMLV 158 A+AAAERAAVQKAV+W DRR+GP+LGTDKR+A+ADFR DDKHN+DCWDTTRNTTSL+LV Sbjct: 89 ASAAAERAAVQKAVVWLDRRLGPVLGTDKRIARADFRYFDDKHNFDCWDTTRNTTSLLLV 148 Query: 159 MQAWNLFRFHDVGDPHYRGFSLA-QTPHNTAVLVERATKVEWAVDLWPRGYLQPPDVMTV 217 MQ W LF++H VGDP YRG L QTPHNTAVL ERA +W VD+W R Y Q P+VM V Sbjct: 149 MQEWGLFKYHSVGDPKYRGNVLVLQTPHNTAVLTERAAGTQWVVDMWTRAYAQTPEVMPV 208 Query: 218 AKWVTED 224 +WV D Sbjct: 209 DQWVKLD 215