BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0037.p (530 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773901.1| bifunctional proline dehydrogenase/pyrroline-5-... 603 e-170 pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Ut... 603 e-170 ref|ZP_08628325.1| proline dehydrogenase/ delta-1-pyrroline-5-ca... 595 e-168 ref|YP_578588.1| bifunctional proline dehydrogenase/pyrroline-5-... 586 e-165 ref|ZP_01044881.1| delta-1-pyrroline-5-carboxylate dehydrogenase... 585 e-165 >ref|NP_773901.1| bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC52526.1| proline dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 999 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 297/355 (83%), Positives = 319/355 (89%) Query: 1 LLQSEGGKTLDDALSEVREAIDFCRYYAALGQKLFGEGETMPGPTGESNVLELHGRGAFV 60 LLQ EGGKTLDDALSE+REA DFCRYYAA G+KLFG MPGPTGESN L + GRG FV Sbjct: 593 LLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFV 652 Query: 61 AISPWNFPLAIFLGQVTAALMAGNAVIAKPAEQTPRIAAEVVALLHQAGVPPSALHLVQG 120 AISPWNFPLAIFLGQVTAALMAGN+V+AKPAEQTPRIA E VALLH+AG+P SAL+LV G Sbjct: 653 AISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTG 712 Query: 121 DGAVGAALVAHPAIAGVVFTGSTEVARSINRTLAAKDGPIVPLIAETGGINAMIVDATAL 180 DG +GAAL AHP IAGVVFTGSTEVARSINR LAAKDGPIVPLIAETGGINAMI DATAL Sbjct: 713 DGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATAL 772 Query: 181 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELKIGDPSEPSTHIG 240 PEQVADDVVTSAFRSAGQRCSALRLLFVQ+DVADRMIEM+AGAARELKIGDPS+ +TH+G Sbjct: 773 PEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVG 832 Query: 241 PVIDAEAKQRLDAHIARMKQEARVHLAGEAPSGNFVAPHIFELSAAGQLKEEVFGPILHV 300 PVID EAKQRLDAHIARMK EAR+H AG AP G FVAPHIFEL+ AGQL EEVFGPILHV Sbjct: 833 PVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHV 892 Query: 301 VRYRADKLGEVLTAIEATGFGLTLGIHSRIDDTIEHVIDRLQVGNIYVNRNMIGA 355 VRYR + L VL AIE TG+GLTLG+HSRIDD+IE +IDR+QVGNIYVNRNMIGA Sbjct: 893 VRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGA 947 >pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A (Puta) Protein pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A (Puta) Protein Length = 1001 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 297/355 (83%), Positives = 319/355 (89%) Query: 1 LLQSEGGKTLDDALSEVREAIDFCRYYAALGQKLFGEGETMPGPTGESNVLELHGRGAFV 60 LLQ EGGKTLDDALSE+REA DFCRYYAA G+KLFG MPGPTGESN L + GRG FV Sbjct: 595 LLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFV 654 Query: 61 AISPWNFPLAIFLGQVTAALMAGNAVIAKPAEQTPRIAAEVVALLHQAGVPPSALHLVQG 120 AISPWNFPLAIFLGQVTAALMAGN+V+AKPAEQTPRIA E VALLH+AG+P SAL+LV G Sbjct: 655 AISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTG 714 Query: 121 DGAVGAALVAHPAIAGVVFTGSTEVARSINRTLAAKDGPIVPLIAETGGINAMIVDATAL 180 DG +GAAL AHP IAGVVFTGSTEVARSINR LAAKDGPIVPLIAETGGINAMI DATAL Sbjct: 715 DGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATAL 774 Query: 181 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELKIGDPSEPSTHIG 240 PEQVADDVVTSAFRSAGQRCSALRLLFVQ+DVADRMIEM+AGAARELKIGDPS+ +TH+G Sbjct: 775 PEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVG 834 Query: 241 PVIDAEAKQRLDAHIARMKQEARVHLAGEAPSGNFVAPHIFELSAAGQLKEEVFGPILHV 300 PVID EAKQRLDAHIARMK EAR+H AG AP G FVAPHIFEL+ AGQL EEVFGPILHV Sbjct: 835 PVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHV 894 Query: 301 VRYRADKLGEVLTAIEATGFGLTLGIHSRIDDTIEHVIDRLQVGNIYVNRNMIGA 355 VRYR + L VL AIE TG+GLTLG+HSRIDD+IE +IDR+QVGNIYVNRNMIGA Sbjct: 895 VRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGA 949 >ref|ZP_08628325.1| proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09234.1| proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] Length = 1011 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 294/356 (82%), Positives = 321/356 (90%), Gaps = 1/356 (0%) Query: 1 LLQSEGGKTLDDALSEVREAIDFCRYYAALGQKLFGEGETMPGPTGESNVLELHGRGAFV 60 LLQSEGGKT+DDA+SEVREA+DFCRYYA+ G++LF +G+ + GPTGESN L L GRGA V Sbjct: 605 LLQSEGGKTIDDAVSEVREAVDFCRYYASEGRRLFAQGQPLSGPTGESNTLRLRGRGAMV 664 Query: 61 AISPWNFPLAIFLGQVTAALMAGNAVIAKPAEQTPRIAAEVVALLHQAGVPPSALHLVQG 120 AISPWNFPLAIF GQV A LMAGN VIAKPAEQTP IAAE VALLH+AG+P SALHLVQG Sbjct: 665 AISPWNFPLAIFTGQVAACLMAGNTVIAKPAEQTPSIAAEAVALLHEAGIPDSALHLVQG 724 Query: 121 DGAVGAALVAHPAIAGVVFTGSTEVARSINRTLAAKDGPIVPLIAETGGINAMIVDATAL 180 DGA+GAALVAHP IAGV FTGSTEVARSINRTLAAK+GPIVPLIAETGGINAMIVDATAL Sbjct: 725 DGAIGAALVAHPEIAGVAFTGSTEVARSINRTLAAKNGPIVPLIAETGGINAMIVDATAL 784 Query: 181 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELKIGDPSEPSTHIG 240 PEQVADDVV SAFRSAGQRCSALRLLFVQDD+ADRMIEMIAGAARELK+GDP +P+T +G Sbjct: 785 PEQVADDVVMSAFRSAGQRCSALRLLFVQDDIADRMIEMIAGAARELKVGDPRDPTTQVG 844 Query: 241 PVIDAEAKQRLDAHIARMKQEARVHLAGEAP-SGNFVAPHIFELSAAGQLKEEVFGPILH 299 PVIDAEAKQRLDAHIA MK ARVH AGEAP SGNFVAPHIFEL++A QL EEVFGPILH Sbjct: 845 PVIDAEAKQRLDAHIAFMKNTARVHFAGEAPASGNFVAPHIFELASADQLTEEVFGPILH 904 Query: 300 VVRYRADKLGEVLTAIEATGFGLTLGIHSRIDDTIEHVIDRLQVGNIYVNRNMIGA 355 VVRY+A L VL +I A+G+GLTLGIHSRID+TIE V++RL VGNIYVNRNMIGA Sbjct: 905 VVRYKAADLERVLQSIAASGYGLTLGIHSRIDETIESVVERLAVGNIYVNRNMIGA 960 >ref|YP_578588.1| bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Nitrobacter hamburgensis X14] gb|ABE64128.1| L-proline dehydrogenase [Nitrobacter hamburgensis X14] Length = 1017 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 290/356 (81%), Positives = 316/356 (88%), Gaps = 1/356 (0%) Query: 1 LLQSEGGKTLDDALSEVREAIDFCRYYAALGQKLFGEGETMPGPTGESNVLELHGRGAFV 60 LLQ EGGKTLDD++SEVREA DFCRYYAA G+KLF + MPGPTGE N L L GRG F Sbjct: 610 LLQREGGKTLDDSVSEVREAADFCRYYAAQGRKLFDNAQPMPGPTGERNTLRLRGRGVFA 669 Query: 61 AISPWNFPLAIFLGQVTAALMAGNAVIAKPAEQTPRIAAEVVALLHQAGVPPSALHLVQG 120 AISPWNFPLAIF GQ+TAALMAGN V AKPAEQTP+IAAE V LLH+AG+P +ALHL+QG Sbjct: 670 AISPWNFPLAIFTGQITAALMAGNTVAAKPAEQTPQIAAEAVRLLHEAGIPETALHLIQG 729 Query: 121 DGAVGAALVAHPAIAGVVFTGSTEVARSINRTLAAKDGPIVPLIAETGGINAMIVDATAL 180 DG +GAALVAH IAGVVFTGST VARSINR+LAAKDGPIVPLIAETGGINAMI DATAL Sbjct: 730 DGPIGAALVAHRDIAGVVFTGSTVVARSINRSLAAKDGPIVPLIAETGGINAMIADATAL 789 Query: 181 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELKIGDPSEPSTHIG 240 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAAREL+IGDPS+P+TH+G Sbjct: 790 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELRIGDPSDPATHVG 849 Query: 241 PVIDAEAKQRLDAHIARMKQEARVHLAGEAP-SGNFVAPHIFELSAAGQLKEEVFGPILH 299 PVID EAKQ+LDAHIARM +E RV AG+AP SGNFVAPHIFEL+ A QL EEVFGPILH Sbjct: 850 PVIDREAKQQLDAHIARMTREGRVRFAGQAPASGNFVAPHIFELADARQLSEEVFGPILH 909 Query: 300 VVRYRADKLGEVLTAIEATGFGLTLGIHSRIDDTIEHVIDRLQVGNIYVNRNMIGA 355 VVRYRA L VL AI+ +G+GLTLGIHSRIDDTIE ++DRLQVGN+YVNRNMIGA Sbjct: 910 VVRYRASGLDAVLQAIDDSGYGLTLGIHSRIDDTIEVIVDRLQVGNVYVNRNMIGA 965 >ref|ZP_01044881.1| delta-1-pyrroline-5-carboxylate dehydrogenase 3 [Nitrobacter sp. Nb-311A] gb|EAQ36886.1| delta-1-pyrroline-5-carboxylate dehydrogenase 3 [Nitrobacter sp. Nb-311A] Length = 1002 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 294/356 (82%), Positives = 316/356 (88%), Gaps = 1/356 (0%) Query: 1 LLQSEGGKTLDDALSEVREAIDFCRYYAALGQKLFGEGETMPGPTGESNVLELHGRGAFV 60 LLQ EGGKTLDD++SEVREA DFCRYYAA G+KLFG+ + MPGPTGE N L L GRG F Sbjct: 595 LLQREGGKTLDDSVSEVREAADFCRYYAAEGRKLFGDAQPMPGPTGERNALRLRGRGVFA 654 Query: 61 AISPWNFPLAIFLGQVTAALMAGNAVIAKPAEQTPRIAAEVVALLHQAGVPPSALHLVQG 120 AISPWNFPLAIF+GQVTAALMAGNAVIAKPAEQTP+IAAE V LLH+ GVP +ALHL+QG Sbjct: 655 AISPWNFPLAIFVGQVTAALMAGNAVIAKPAEQTPQIAAEAVRLLHETGVPETALHLIQG 714 Query: 121 DGAVGAALVAHPAIAGVVFTGSTEVARSINRTLAAKDGPIVPLIAETGGINAMIVDATAL 180 DG VGAALVAH IAGVVFTGSTEVARSINR LAAKDGPIVPLIAETGGINAMI DATAL Sbjct: 715 DGHVGAALVAHRDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATAL 774 Query: 181 PEQVADDVVTSAFRSAGQRCSALRLLFVQDDVADRMIEMIAGAARELKIGDPSEPSTHIG 240 PEQVADDVVTSAFRSAGQRCSALRLLFVQ+DVADRMIEMI GAA ELKIGDPS+P+TH+G Sbjct: 775 PEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMIVGAAGELKIGDPSDPATHVG 834 Query: 241 PVIDAEAKQRLDAHIARMKQEARVHLAGEAP-SGNFVAPHIFELSAAGQLKEEVFGPILH 299 VID EAK+RLDAHIARM +EARVH AG AP SGNFVAPH+FEL A QL EEVFGPILH Sbjct: 835 WVIDREAKKRLDAHIARMMREARVHFAGLAPSSGNFVAPHVFELDDARQLTEEVFGPILH 894 Query: 300 VVRYRADKLGEVLTAIEATGFGLTLGIHSRIDDTIEHVIDRLQVGNIYVNRNMIGA 355 VVRY A L +VL +I TG+GLTLGIHSRIDDT+E V+DRLQVGNIYVNRNMIGA Sbjct: 895 VVRYSASDLDQVLASIADTGYGLTLGIHSRIDDTVETVVDRLQVGNIYVNRNMIGA 950