BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0035.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773902.1| racemase [Bradyrhizobium japonicum USDA 110] >g... 714 0.0 ref|YP_001242483.1| acyl-coenzyme A transferase [Bradyrhizobium ... 681 0.0 ref|YP_001203558.1| Acyl-coenzyme A transferase [Bradyrhizobium ... 676 0.0 ref|YP_001990770.1| L-carnitine dehydratase/bile acid-inducible ... 662 0.0 ref|YP_570830.1| L-carnitine dehydratase/bile acid-inducible pro... 660 0.0 >ref|NP_773902.1| racemase [Bradyrhizobium japonicum USDA 110] dbj|BAC52527.1| blr7262 [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/401 (85%), Positives = 375/401 (93%) Query: 1 MEKGIFDGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPSSEH 60 M+KGIF GLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYP+ EH Sbjct: 48 MDKGIFAGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPTGEH 107 Query: 61 NFAWMLEARNKKSLALDLTKPDAQQVLYKLVAEADVFITNMPPQVRQKLGITHDHLAHLN 120 NFAW+LEARNKKSLALDL+KP+AQ VLYKLV E DVFITNMPP VR KLGIT+DHLAHLN Sbjct: 108 NFAWLLEARNKKSLALDLSKPEAQAVLYKLVEETDVFITNMPPPVRTKLGITYDHLAHLN 167 Query: 121 DRLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADEETTPARSVAGMGDHPCAM 180 DRLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRAD +TTPARSVAGMGDHPCAM Sbjct: 168 DRLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADTDTTPARSVAGMGDHPCAM 227 Query: 181 AFYGAIVTALFQREKTGKGSHVSTNLMANGVWANGVLAQAKLAGAKFKKRKPREEALNAV 240 A YGAIVTAL+QREKTGKGSHV++NLMANGVWA VLAQAKL GAKF +R+PRE ALNAV Sbjct: 228 ALYGAIVTALYQREKTGKGSHVASNLMANGVWAASVLAQAKLCGAKFGERRPRERALNAV 287 Query: 241 TNHYKCKDGRWLILSLLNEDRQWPTLARCMGREDLVADTRFATKADRHARSVELIKIFDE 300 NHY+CKDGRWLILSLL+E++Q+PTLA+C+GREDL+ D RFATK DRHARSVELIKIFDE Sbjct: 288 ANHYQCKDGRWLILSLLSEEKQFPTLAKCLGREDLITDPRFATKPDRHARSVELIKIFDE 347 Query: 301 VFAGKDLAEWRKILDGNGLVFGVVGILDDIPNDKQMIENEVLVRFENDTMLTVNSPIFID 360 FA KDLAEWRKILDGNGLVFG+VGILDDIPNDKQM++NEVLV FENDTMLT++SPI++D Sbjct: 348 TFATKDLAEWRKILDGNGLVFGIVGILDDIPNDKQMLDNEVLVPFENDTMLTISSPIWVD 407 Query: 361 GARKVQPRKPPEVGEHSDEILRQAGYDEATIQKLRASGAVA 401 G +KVQPRKPP VGEHSDEILR AGYDEA I++LR++GAV Sbjct: 408 GTKKVQPRKPPGVGEHSDEILRGAGYDEAAIKQLRSNGAVG 448 >ref|YP_001242483.1| acyl-coenzyme A transferase [Bradyrhizobium sp. BTAi1] gb|ABQ38577.1| Acyl-coenzyme A transferase [Bradyrhizobium sp. BTAi1] Length = 402 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/400 (82%), Positives = 365/400 (91%) Query: 2 EKGIFDGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPSSEHN 61 EKGIF GLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYP SEHN Sbjct: 3 EKGIFHGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEHN 62 Query: 62 FAWMLEARNKKSLALDLTKPDAQQVLYKLVAEADVFITNMPPQVRQKLGITHDHLAHLND 121 +AW LEARNK+S+ALDL KP+AQ VL +LVAEADVFITN PP VR KLG+T++ LA LN Sbjct: 63 YAWYLEARNKRSIALDLAKPEAQTVLRRLVAEADVFITNFPPSVRAKLGLTYETLAPLNP 122 Query: 122 RLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADEETTPARSVAGMGDHPCAMA 181 RLIYASFTGYGEKGEEA+KPGFDSNAYWARSGLMDLVRADE TTPARSVAGMGDHPCAMA Sbjct: 123 RLIYASFTGYGEKGEEADKPGFDSNAYWARSGLMDLVRADESTTPARSVAGMGDHPCAMA 182 Query: 182 FYGAIVTALFQREKTGKGSHVSTNLMANGVWANGVLAQAKLAGAKFKKRKPREEALNAVT 241 FYGAIVTAL+QRE+TG+GSHV++NLMANGVWA VLAQAKL GA F +R+PRE ALNAV Sbjct: 183 FYGAIVTALYQRERTGRGSHVASNLMANGVWAASVLAQAKLCGATFVERRPRERALNAVA 242 Query: 242 NHYKCKDGRWLILSLLNEDRQWPTLARCMGREDLVADTRFATKADRHARSVELIKIFDEV 301 NHYKC+DGRW++LSLLNE++QWP LARC+GREDL+ D RF TKADRHARSVELI+ FD V Sbjct: 243 NHYKCQDGRWIMLSLLNEEKQWPILARCLGREDLIEDPRFVTKADRHARSVELIQEFDAV 302 Query: 302 FAGKDLAEWRKILDGNGLVFGVVGILDDIPNDKQMIENEVLVRFENDTMLTVNSPIFIDG 361 FA + LAEWR+ILDG+GLVFGVVGILDDIP+DKQMIENEVLV FENDTMLTVNSPI+IDG Sbjct: 303 FATRPLAEWRRILDGSGLVFGVVGILDDIPHDKQMIENEVLVPFENDTMLTVNSPIWIDG 362 Query: 362 ARKVQPRKPPEVGEHSDEILRQAGYDEATIQKLRASGAVA 401 RKV PRKPP +GEHSD+ILRQAG+D+ I++LRA GAVA Sbjct: 363 QRKVVPRKPPGLGEHSDDILRQAGFDDQAIRELRARGAVA 402 >ref|YP_001203558.1| Acyl-coenzyme A transferase [Bradyrhizobium sp. ORS 278] emb|CAL75321.1| Acyl-coenzyme A transferase [Bradyrhizobium sp. ORS 278] Length = 424 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/400 (82%), Positives = 359/400 (89%) Query: 2 EKGIFDGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPSSEHN 61 +KGIF GLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYP SEHN Sbjct: 25 DKGIFYGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEHN 84 Query: 62 FAWMLEARNKKSLALDLTKPDAQQVLYKLVAEADVFITNMPPQVRQKLGITHDHLAHLND 121 +AW LEARNK+S+ALDL+KPDAQ VL +LV ADVFITN PP VR KLG+T++ L LN Sbjct: 85 YAWYLEARNKRSIALDLSKPDAQAVLQRLVGGADVFITNFPPSVRAKLGLTYERLGPLNP 144 Query: 122 RLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADEETTPARSVAGMGDHPCAMA 181 RLIYASFTGYGEKGEEA+KPGFDSNAYWARSGLMDLVRADE TTPARSVAGMGDHPCAMA Sbjct: 145 RLIYASFTGYGEKGEEADKPGFDSNAYWARSGLMDLVRADETTTPARSVAGMGDHPCAMA 204 Query: 182 FYGAIVTALFQREKTGKGSHVSTNLMANGVWANGVLAQAKLAGAKFKKRKPREEALNAVT 241 FYGAIVTAL+QRE+TGKG HV++NLMANGVWA VLAQAKL GA F +R+PRE ALNAV Sbjct: 205 FYGAIVTALYQRERTGKGCHVASNLMANGVWAASVLAQAKLCGATFVERRPRERALNAVA 264 Query: 242 NHYKCKDGRWLILSLLNEDRQWPTLARCMGREDLVADTRFATKADRHARSVELIKIFDEV 301 NHY+C+DGRW++LSLLNE++QWP LARC+GREDL+ D RF TKADRHARSVELI FD V Sbjct: 265 NHYQCQDGRWIMLSLLNEEKQWPILARCLGREDLINDPRFRTKADRHARSVELIHEFDAV 324 Query: 302 FAGKDLAEWRKILDGNGLVFGVVGILDDIPNDKQMIENEVLVRFENDTMLTVNSPIFIDG 361 FA + LAEWRKILDG+GLVFGVVGILDDIPND+QMIENEVLV FENDTMLTVNSPIFIDG Sbjct: 325 FATRPLAEWRKILDGSGLVFGVVGILDDIPNDRQMIENEVLVPFENDTMLTVNSPIFIDG 384 Query: 362 ARKVQPRKPPEVGEHSDEILRQAGYDEATIQKLRASGAVA 401 RKV PRKPP VGEHSDEILR AG+DE I+ LRA GAVA Sbjct: 385 QRKVAPRKPPGVGEHSDEILRGAGFDEQAIRGLRARGAVA 424 >ref|YP_001990770.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] gb|ACF00295.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] Length = 402 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/399 (78%), Positives = 359/399 (89%) Query: 2 EKGIFDGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPSSEHN 61 E GIF GLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYP S+HN Sbjct: 3 ENGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPISDHN 62 Query: 62 FAWMLEARNKKSLALDLTKPDAQQVLYKLVAEADVFITNMPPQVRQKLGITHDHLAHLND 121 +AWMLEARNK+SLALDL KP+ ++VL KLVAEADVFITN PP VR +LG+ + LA LN+ Sbjct: 63 YAWMLEARNKRSLALDLAKPEGKEVLRKLVAEADVFITNFPPPVRARLGVAYADLAPLNE 122 Query: 122 RLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADEETTPARSVAGMGDHPCAMA 181 RLIYASFTGYGE+GEEANKPGFDSNA+WARSG+MDLVRADE++TPARSVAGMGDHPCAM+ Sbjct: 123 RLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDSTPARSVAGMGDHPCAMS 182 Query: 182 FYGAIVTALFQREKTGKGSHVSTNLMANGVWANGVLAQAKLAGAKFKKRKPREEALNAVT 241 +GAIVTAL++RE+TGKGS V +NLMANG+W+ VLAQAKL GA+F+ R+PRE ALNAV Sbjct: 183 LFGAIVTALYKRERTGKGSEVKSNLMANGLWSTSVLAQAKLVGAEFQPRRPRERALNAVA 242 Query: 242 NHYKCKDGRWLILSLLNEDRQWPTLARCMGREDLVADTRFATKADRHARSVELIKIFDEV 301 NHY+C+DGRWLILSLLNE++QWPTL +C+GREDL D RFATKADRHARS+ELI IFDE+ Sbjct: 243 NHYRCRDGRWLILSLLNEEKQWPTLTKCLGREDLTDDPRFATKADRHARSIELIGIFDEI 302 Query: 302 FAGKDLAEWRKILDGNGLVFGVVGILDDIPNDKQMIENEVLVRFENDTMLTVNSPIFIDG 361 FA +DLAEWRK LDG GLVFGVVGILDDI DKQ+IENEVLV FENDT LT+NSPI+I+G Sbjct: 303 FATRDLAEWRKALDGTGLVFGVVGILDDITTDKQLIENEVLVPFENDTTLTINSPIWIEG 362 Query: 362 ARKVQPRKPPEVGEHSDEILRQAGYDEATIQKLRASGAV 400 + K +PRKPP VGEHSDE+LR AGYD+A I+ LRASGAV Sbjct: 363 STKTRPRKPPGVGEHSDEVLRSAGYDDAAIKALRASGAV 401 >ref|YP_570830.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris BisB5] gb|ABE40929.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris BisB5] Length = 421 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/401 (78%), Positives = 358/401 (89%) Query: 1 MEKGIFDGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPSSEH 60 M+ GIF GLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYP SEH Sbjct: 21 MDDGIFSGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEH 80 Query: 61 NFAWMLEARNKKSLALDLTKPDAQQVLYKLVAEADVFITNMPPQVRQKLGITHDHLAHLN 120 N+AWM+E+RNK+SLALDL KP+ Q VL +LVAEADVFITN PP VR +LGI + LA LN Sbjct: 81 NYAWMMESRNKRSLALDLAKPEGQAVLRRLVAEADVFITNFPPPVRARLGIAYPDLAPLN 140 Query: 121 DRLIYASFTGYGEKGEEANKPGFDSNAYWARSGLMDLVRADEETTPARSVAGMGDHPCAM 180 DRLIYASFTGYGE+GEEANKPGFDSNA+WARSG+MDLVRADE+TTPARS+AGMGDHPCAM Sbjct: 141 DRLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDTTPARSLAGMGDHPCAM 200 Query: 181 AFYGAIVTALFQREKTGKGSHVSTNLMANGVWANGVLAQAKLAGAKFKKRKPREEALNAV 240 A YGAIVTAL++RE +GKGS V +NLMANGVW++ VLAQAKL GA+F+ R PRE ALNAV Sbjct: 201 ALYGAIVTALYKREHSGKGSEVKSNLMANGVWSSSVLAQAKLVGAEFQPRMPRERALNAV 260 Query: 241 TNHYKCKDGRWLILSLLNEDRQWPTLARCMGREDLVADTRFATKADRHARSVELIKIFDE 300 NHY+C+DGRWLILSLLNE++QWPTL RC+GREDL D RFATK DRHARS+ELI IFD Sbjct: 261 ANHYRCRDGRWLILSLLNEEKQWPTLMRCLGREDLTDDPRFATKPDRHARSIELIGIFDG 320 Query: 301 VFAGKDLAEWRKILDGNGLVFGVVGILDDIPNDKQMIENEVLVRFENDTMLTVNSPIFID 360 +FA +DLA+WRK LDGNGLVFGVVGILDDIPND+QMI+N+VLV FEN+T+LTVNSPI+++ Sbjct: 321 IFATRDLADWRKTLDGNGLVFGVVGILDDIPNDQQMIDNDVLVPFENNTILTVNSPIWVE 380 Query: 361 GARKVQPRKPPEVGEHSDEILRQAGYDEATIQKLRASGAVA 401 G+ K++PR PP VGEHSDE+LR AGYD I+ LRASGAV Sbjct: 381 GSAKIRPRLPPAVGEHSDEVLRSAGYDNEAIRALRASGAVG 421