BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0224.0008.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239780.1| AraC family transcriptional regulator [Brady... 418 e-115 ref|YP_001205312.1| AraC/XylS family transcription factor [Brady... 418 e-115 ref|ZP_01014265.1| transcriptional regulator, AraC family protei... 154 2e-35 ref|YP_001261491.1| AraC family transcriptional regulator [Sphin... 144 2e-32 ref|YP_002489621.1| AraC family transcriptional regulator [Arthr... 140 4e-31 >ref|YP_001239780.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35874.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 335 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/324 (66%), Positives = 245/324 (75%), Gaps = 6/324 (1%) Query: 7 ADRSRRLSWNTADTRPGEQFAYYREAICQAFMNLTPEPPATPGFLARVETVGLG------ 60 A+ R SWNTA RP EQF+YYREAICQAFMNLTPEP GF A V+++G+G Sbjct: 4 AEPQRLRSWNTAAVRPAEQFSYYREAICQAFMNLTPEPARGIGFAAEVQSIGIGRDGKNT 63 Query: 61 DGAVNRVSFPEHVVRRSAADIAASSRRCYYLNLKLAGRCRIQQAGREISLSPGQVGIFDS 120 GA+NRV+FPEHVVRRS ADIAAS++RC+YLNLKLAGRC I Q E+SLS GQVGIFDS Sbjct: 64 TGAINRVTFPEHVVRRSRADIAASAQRCFYLNLKLAGRCTIVQDDCEVSLSAGQVGIFDS 123 Query: 121 GQRFALLHDRGPALQVASFWVPAEALDERLPSAPEAAPARVSDDPFVGHLITETAQVLNT 180 + FAL HDRGP+L V SF VPAEAL RLP+AP+ AP R+SDDP VG LI ETA+ LN Sbjct: 124 DRTFALQHDRGPSLGVISFRVPAEALFSRLPNAPDIAPMRLSDDPCVGALIVETARSLNA 183 Query: 181 AALRASDIDNARLFGVLLDLVALSLSRSGRAGVAESAGLADATWLALRRAVDRRLREPGL 240 ALR + D A LF VLLDL AL +SRS R + ADAT LALRRA+ RLREPGL Sbjct: 184 NALRLAADDTAALFDVLLDLAALGVSRSFRREAHATTSFADATTLALRRAIHERLREPGL 243 Query: 241 GVAAIAAAIGISERYVHKLFERAGTTFASHVMDRRLDGAARDLRDPVIAGRAIGDIAFDW 300 VA +A +GISERYVHKL RAGT+F+ VM+RRLDGAARDLRDP A R IG IAFDW Sbjct: 244 TVATVARMVGISERYVHKLLARAGTSFSELVMERRLDGAARDLRDPCCAARDIGSIAFDW 303 Query: 301 GFSDLSHFTRRFRHRFGCTPRDWR 324 GFSDLSHFTRRF+ RFG PRDWR Sbjct: 304 GFSDLSHFTRRFKQRFGMRPRDWR 327 >ref|YP_001205312.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278] emb|CAL77081.1| putative transcriptional regulatory protein, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 327 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 216/320 (67%), Positives = 242/320 (75%), Gaps = 2/320 (0%) Query: 5 AAADRSRRLSWNTADTRPGEQFAYYREAICQAFMNLTPEPPATPGFLARVETVGLGDGAV 64 AA++R R SWNTA RP EQF+YYREAICQAFMNLTPEPP GF A V+ + LG GA+ Sbjct: 4 AASERQR--SWNTAMVRPAEQFSYYREAICQAFMNLTPEPPRRHGFSAEVQHISLGRGAI 61 Query: 65 NRVSFPEHVVRRSAADIAASSRRCYYLNLKLAGRCRIQQAGREISLSPGQVGIFDSGQRF 124 NRV+FPEH VRRS DIAAS +RC+YLNLKLAGRC I Q E+SLS GQVGIFDS + F Sbjct: 62 NRVTFPEHTVRRSRTDIAASDQRCFYLNLKLAGRCTILQDQHEVSLSTGQVGIFDSHRTF 121 Query: 125 ALLHDRGPALQVASFWVPAEALDERLPSAPEAAPARVSDDPFVGHLITETAQVLNTAALR 184 L HDRGP+L V SF VPA+AL RLP+ E AP R+SDDP +G LI ETA+ LN ALR Sbjct: 122 ELRHDRGPSLGVISFRVPADALFGRLPTISEVAPTRLSDDPCLGALIVETARSLNANALR 181 Query: 185 ASDIDNARLFGVLLDLVALSLSRSGRAGVAESAGLADATWLALRRAVDRRLREPGLGVAA 244 D A LF VLLDLVALS+SR R +A ADAT LA+RRA+ RLREPGL VA Sbjct: 182 LVPDDAAALFDVLLDLVALSVSRRTRNEAFATASFADATTLAVRRAIHERLREPGLTVAT 241 Query: 245 IAAAIGISERYVHKLFERAGTTFASHVMDRRLDGAARDLRDPVIAGRAIGDIAFDWGFSD 304 IA+ +GISERYVHKL RAGT+F+ VM RRLDG ARDLRDP AGR IG IAFDWGFSD Sbjct: 242 IASVVGISERYVHKLLARAGTSFSDLVMQRRLDGIARDLRDPACAGRDIGRIAFDWGFSD 301 Query: 305 LSHFTRRFRHRFGCTPRDWR 324 LSHFTRRF+ RFG PRDWR Sbjct: 302 LSHFTRRFKQRFGLRPRDWR 321 >ref|ZP_01014265.1| transcriptional regulator, AraC family protein [Maritimibacter alkaliphilus HTCC2654] gb|EAQ12030.1| transcriptional regulator, AraC family protein [Rhodobacterales bacterium HTCC2654] Length = 333 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 162/329 (49%), Gaps = 12/329 (3%) Query: 2 QQIAAADRSRRLSWNTADTRPGEQFAYYREAICQAFMNLTPE--PPATPGFLARVETVGL 59 + A D RR W R + FAYYRE +C AFM L E GF + + + Sbjct: 6 ETCATGDGPRRWDWRDVGAR--DAFAYYREGVCAAFMPLAAELGRDRHAGFRFAIASHDV 63 Query: 60 GDGAVNRVSFPEHVVRRSAADIAASSRRCYYLNLKLAGRCRIQQAGREISLSPGQVGIFD 119 G +N V H V + A ++AAS CYYLNL+L G CRI+Q G EI+L G +G+F Sbjct: 64 GGAVLNHVRATAHTVTKGARELAASPAECYYLNLQLTGVCRIRQNGGEIALQRGDLGLFT 123 Query: 120 SGQRFALLHDRGPALQVASFWVPAEALDERLP---SAPEAAPARVSDDPFVGHLITETAQ 176 S + L HD P L VAS VP ALD RL + + P +S +P +G L ++A Sbjct: 124 S-EAMELRHDEAPDLAVASLMVPKPALDARLSERRTRFDGRPKALSLNPALGALAADSAA 182 Query: 177 VLNTAALRASDIDNARLFGVLLDLVALSLSRSGRAGVAESAGLADATWLALRRAVDRRLR 236 L A + + RL +LLDL +++ A A A A L A+ RR Sbjct: 183 ALLAALTQGAPARAERLQSILLDLTVEAMTPDD-AAPATRAATHRARILT---ALSRRAC 238 Query: 237 EPGLGVAAIAAAIGISERYVHKLFERAGTTFASHVMDRRLDGAARDLRDPVIAGRAIGDI 296 +P +AA A A ++ R + + + G TF+ + D RL A R L DP A I + Sbjct: 239 DPDFDLAACADATALTPRAIQRALAQTGDTFSDLLTDTRLATARRLLADPARAHLPIATL 298 Query: 297 AFDWGFSDLSHFTRRFRHRFGCTPRDWRR 325 A D GF D SHF R F R G +P WR+ Sbjct: 299 AADAGFRDPSHFGRLFATRMGTSPGAWRK 327 >ref|YP_001261491.1| AraC family transcriptional regulator [Sphingomonas wittichii RW1] gb|ABQ67353.1| transcriptional regulator, AraC family [Sphingomonas wittichii RW1] Length = 329 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 151/311 (48%), Gaps = 7/311 (2%) Query: 16 NTADTRPGEQFAYYREAICQAFMNLTPEPPATPGFLARVETVGLGDGAVNRVSFPEHVVR 75 +T R E+ Y+ + +C F+ L E + F + + G ++ V VR Sbjct: 16 STDTVRAKERLPYWCDMVCDTFVELDCESQESDSFSGELRNIAFGAIQISMVESVAQRVR 75 Query: 76 RSAADIAASSRRCYYLNLKLAGRCRIQQAGREISLSPGQVGIFDSGQRFALLHDRGPALQ 135 R+ + IA S+R + L+L+L G I Q R LSPG ++DS + + L D + Sbjct: 76 RTRSRIAGSTRDHFLLSLQLRGTGAICQDSRVAKLSPGDFALYDSTRPYELRFD--DSFS 133 Query: 136 VASFWVPAEALDERLPSAPEAAPARVSDDPFVGHLITETAQVLNTAALRASDIDNARLFG 195 +P E + RL + R+ VG L + + L+ D+ RL Sbjct: 134 QVVLRLPRETVTGRLIDSHMLTARRIDGQRGVGLLASSFIRQLHEQRADIDDLSLGRLQA 193 Query: 196 VLLDLVALSLSRS--GRAGVAESAGLADATWLALRRAVDRRLREPGLGVAAIAAAIGISE 253 +DL+A +L+ G+A E + A +DR L + L IA+A GIS+ Sbjct: 194 NAVDLMATALAEQTGGQARTNEGQAIIRQRVCAF---IDRNLGDHRLTCEGIASAHGISQ 250 Query: 254 RYVHKLFERAGTTFASHVMDRRLDGAARDLRDPVIAGRAIGDIAFDWGFSDLSHFTRRFR 313 RY+ K+FE + TT + + RRL+ A DL DP++A ++ I FD GF D +HF+R FR Sbjct: 251 RYLRKIFESSSTTVSDWIWSRRLEQAKADLSDPLLAHVSVTAIGFDVGFKDAAHFSRAFR 310 Query: 314 HRFGCTPRDWR 324 RFG +PR+WR Sbjct: 311 SRFGMSPREWR 321 >ref|YP_002489621.1| AraC family transcriptional regulator [Arthrobacter chlorophenolicus A6] gb|ACL41532.1| transcriptional regulator, AraC family [Arthrobacter chlorophenolicus A6] Length = 321 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 9/310 (2%) Query: 20 TRPGEQFAYYREAICQAFMNLTPEPPATPGFLARVETVGLGDGAVNRVSFPEHVVRRSAA 79 T F +++ + ++F+ L E F ++ + L ++ V+ H V R+ A Sbjct: 17 TSTASSFDHWKHLVAESFVPLAAETADAGNFHGQLRSRVLDRMSIVEVTATSHEVHRTPA 76 Query: 80 DIAASSRRCYYLNLKLAGRCRIQQAGREISLSPGQVGIFDSGQRFALLHDRGPALQVASF 139 IA + R + LNL+L G + Q RE L PG + I+D+ + + L + + V F Sbjct: 77 LIARAHERYFKLNLQLEGTGLLIQDNREAVLRPGDLAIYDTSRPYTLAFEDTTRIMVVMF 136 Query: 140 WVPAEALDERLPSAPEAAPARVSDDPFVGHLITETAQVLNTAALRASDIDNARLFGVLLD 199 P + L + A R++ D + ++ + + L+ + +RL LD Sbjct: 137 --PCDTLTLPTDYVGQLAAVRMAGDSGLSGIVGQFIRQLSGNLDVLNGPSGSRLAANALD 194 Query: 200 LVALSLSRSGRAG---VAESAGLADATWLALRRAVDRRLREPGLGVAAIAAAIGISERYV 256 LV+ L + A LA +A+R +D L +P L A+IAAA IS R++ Sbjct: 195 LVSTMLHAEMDISPDRMKPQALLA----VAVREYIDANLSDPLLSPASIAAAHFISTRHL 250 Query: 257 HKLFERAGTTFASHVMDRRLDGAARDLRDPVIAGRAIGDIAFDWGFSDLSHFTRRFRHRF 316 H +F +GTT A + +RL+GA RDLRDP+ AG +G +A WGF D +HF+R FR F Sbjct: 251 HNVFHESGTTVAGWIRTQRLEGAGRDLRDPLHAGLPVGAVAARWGFLDAAHFSRTFRDAF 310 Query: 317 GCTPRDWRRG 326 G P DWRR Sbjct: 311 GVPPSDWRRN 320